TCONS_00048235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048235
Unique NameTCONS_00048235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length231

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048235 ID=TCONS_00048235|Name=TCONS_00048235|organism=Clytia hemisphaerica|type=transcript|length=231bp
TTCCAAAtcggaaaaaacattttatcaaCGCTAATAATTTTGAATATCAG
CTGGAAGAGGATGATGACGAgggaaatgaaaatatttttctgcgaGAAGA
ATGGATGGATATAGCAGATGTAAATTTCGCAAGACCAAATAATATTATAA
CTGATGATAATCAATATTGGGCTGAAATATCAAATTCCTTTACACTAGAA
CAAATCAACGCCATGCCCTTTTGGATCGAGG
Run BLAST on NCBI

transcript from alignment at scaffold_141:103790..104020

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048235 ID=TCONS_00048235|Name=TCONS_00048235|organism=Clytia hemisphaerica|type=transcript|length=231bp|location=Sequence derived from alignment at scaffold_141:103790..104020 (Clytia hemisphaerica)
CCTCGATCCAAAAGGGCATGGCGTTGATTTGTTCTAGTGTAAAGGAATTT
GATATTTCAGCCCAATATTGATTATCATCAGTTATAATATTATTTGGTCT
TGCGAAATTTACATCTGCTATATCCATCCATTCTTCtcgcagaaaaatat
tttcatttcccTCGTCATCATCCTCTTCCAGCTGATATTCAAAATTATTA
GCGttgataaaatgttttttccgaTTTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030697XLOC_030697Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048235-exon-scaffold_141-1491911889:103790..104020TCONS_00048235-exon-scaffold_141-1491911889:103790..104020Clytia hemisphaericaexon
TCONS_00048235-exon-scaffold_141-1510915933:103790..104020TCONS_00048235-exon-scaffold_141-1510915933:103790..104020Clytia hemisphaericaexon
TCONS_00048235-exon-scaffold_141-1575043694:103790..104020TCONS_00048235-exon-scaffold_141-1575043694:103790..104020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:103790..104020 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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