TCONS_00048237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048237
Unique NameTCONS_00048237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048237 ID=TCONS_00048237|Name=TCONS_00048237|organism=Clytia hemisphaerica|type=transcript|length=455bp
CATTGATTGATAGAACTCTAAGCTTGATCATTTTTGcaatatgaataaaa
ataaaaatatgtgGAACATTGATGGAACACTCTAGACTTGATCAATTTTG
CCATAGGAGTCAGTAAGAAAACTGTGGGACATTGATGGAACTCTAGGGTT
GACGAAATTTGCCTGGTAGTTATCGAAATGTAAAAATTGTGGAAGATTGA
ATGCATTGAATGAAATGAGAACTCTACATAGATGCCATTCTAGGcgttga
attttcatttttaaattatGTGTGCTACAGTTTTGGCTTTCACTGGTACA
TACACTCGTTATAATGCCATCGTTACATTCTATGTCAAATTCTTGCAAAA
GTTCCAGATATTTTGTCTTATCCGCAAGATGTTTATATCTTTTGATAGTA
TCCTCTGATAATTTATGtaatcttttttcttcattccgACGATTTTCGAT
TTGTG
Run BLAST on NCBI

transcript from alignment at scaffold_141:117111..117565

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048237 ID=TCONS_00048237|Name=TCONS_00048237|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at scaffold_141:117111..117565 (Clytia hemisphaerica)
CACAAATCGAAAATCGTcggaatgaagaaaaaagattaCATAAATTATCA
GAGGATACTATCAAAAGATATAAACATCTTGCGGATAAGACAAAATATCT
GGAACTTTTGCAAGAATTTGACATAGAATGTAACGATGGCATTATAACGA
GTGTATGTACCAGTGAAAGCCAAAACTGTAGCACACataatttaaaaatg
aaaattcaacgCCTAGAATGGCATCTATGTAGAGTTCTCATTTCATTCAA
TGCATTCAATCTTCCACAATTTTTACATTTCGATAACTACCAGGCAAATT
TCGTCAACCCTAGAGTTCCATCAATGTCCCACAGTTTTCTTACTGACTCC
TATGGCAAAATTGATCAAGTCTAGAGTGTTCCATCAATGTTCcacatatt
tttatttttattcatattgCAAAAATGATCAAGCTTAGAGTTCTATCAAT
CAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030699XLOC_030699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048237-exon-scaffold_141-1491911889:117111..117565TCONS_00048237-exon-scaffold_141-1491911889:117111..117565Clytia hemisphaericaexon
TCONS_00048237-exon-scaffold_141-1510915933:117111..117565TCONS_00048237-exon-scaffold_141-1510915933:117111..117565Clytia hemisphaericaexon
TCONS_00048237-exon-scaffold_141-1575043694:117111..117565TCONS_00048237-exon-scaffold_141-1575043694:117111..117565Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:117111..117565 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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