TCONS_00048238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048238
Unique NameTCONS_00048238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048238 ID=TCONS_00048238|Name=TCONS_00048238|organism=Clytia hemisphaerica|type=transcript|length=503bp
AACGTTATTGTTATTGTCAAATTGAATAAATGTATCAACCATATATTTGT
TGTAGTTACAGTATTTgtgtataaaaatattttcttgacaaaaaGGAATG
ATATGAATAAAAACTGacttatatttctttttcatagaaaaaacttaaac
aaaaataatggaGTACAGTTCCTCGTCTTCAAGTGAATCCGACACGACCT
TGTTCGAAAAACTAAGTAAGGGTGAGACACGCcaaagaaaatttagaaat
gccACATTAAAGCGAAATCCTCGAGAGGGTATGTGTTTGCTTTCTGATGA
CGAAAAGTCAAGCAACGAAGATGAGAACATTGTTGCTATTGTTACAGATG
ATGAGTTAGAAAATATTCCCATTGAAATTTTGTCAAACTCCACGCTTAAT
TTGATTTCTTTGGATGATGGCGAATACGAGCTTGAAAAATCGATGATGGA
AATAGatatgtaaaattttgaaagtactTGTCTAAAAATCACAAATAATG
AGA
Run BLAST on NCBI

protein sequence of TCONS_00048238-protein

>TCONS_00048238-protein ID=TCONS_00048238-protein|Name=TCONS_00048238-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
SLFVIFRQVLSKFYISISIIDFSSSYSPSSKEIKLSVEFDKISMGIFSNS
SSVTIATMFSSSLLDFSSSESKHIPSRGFRFNVAFLNFLWRVSPLLSFSN
KVVSDSLEDEELYSIIFV
Run BLAST on NCBI

transcript from alignment at scaffold_141:138197..138699

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048238 ID=TCONS_00048238|Name=TCONS_00048238|organism=Clytia hemisphaerica|type=transcript|length=503bp|location=Sequence derived from alignment at scaffold_141:138197..138699 (Clytia hemisphaerica)
TCTCATTATTTGTGATTTTTAGACAagtactttcaaaattttacatatCT
ATTTCCATCATCGATTTTTCAAGCTCGTATTCGCCATCATCCAAAGAAAT
CAAATTAAGCGTGGAGTTTGACAAAATTTCAATGGGAATATTTTCTAACT
CATCATCTGTAACAATAGCAACAATGTTCTCATCTTCGTTGCTTGACTTT
TCGTCATCAGAAAGCAAACACATACCCTCTCGAGGATTTCGCTTTAATGT
ggcatttctaaattttctttgGCGTGTCTCACCCTTACTTAGTTTTTCGA
ACAAGGTCGTGTCGGATTCACTTGAAGACGAGGAACTGTACtccattatt
tttgtttaagttttttctatgaaaaagaaatataagtCAGTTTTTATTCA
TATCATTCCtttttgtcaagaaaatatttttatacacAAATACTGTAACT
ACAACAAATATATGGTTGATACATTTATTCAATTTGACAATAACAATAAC
GTT

Coding sequence (CDS) from alignment at scaffold_141:138197..138699

>TCONS_00048238 ID=TCONS_00048238|Name=TCONS_00048238|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_141:138197..138699 (Clytia hemisphaerica)
TCATTATTTGTGATTTTTAGACAagtactttcaaaattttacatatCTAT
TTCCATCATCGATTTTTCAAGCTCGTATTCGCCATCATCCAAAGAAATCA
AATTAAGCGTGGAGTTTGACAAAATTTCAATGGGAATATTTTCTAACTCA
TCATCTGTAACAATAGCAACAATGTTCTCATCTTCGTTGCTTGACTTTTC
GTCATCAGAAAGCAAACACATACCCTCTCGAGGATTTCGCTTTAATGTgg
catttctaaattttctttgGCGTGTCTCACCCTTACTTAGTTTTTCGAAC
AAGGTCGTGTCGGATTCACTTGAAGACGAGGAACTGTACtccattatttt
tgtttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030700XLOC_030700Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048238-proteinTCONS_00048238-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048238-exon-scaffold_141-1491911889:138197..138699TCONS_00048238-exon-scaffold_141-1491911889:138197..138699Clytia hemisphaericaexon
TCONS_00048238-exon-scaffold_141-1510915933:138197..138699TCONS_00048238-exon-scaffold_141-1510915933:138197..138699Clytia hemisphaericaexon
TCONS_00048238-exon-scaffold_141-1575043694:138197..138699TCONS_00048238-exon-scaffold_141-1575043694:138197..138699Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:138197..138699 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.117675	0.136632	0.133673	0	0	0	0	0.101688	0.125958	0	0	0.160511	0.166692	0.274088	0.294138	0.543531	0.0928503	0	0	0	0.170727	0	0.25158	0	0.23126	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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