|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048239 ID=TCONS_00048239|Name=TCONS_00048239|organism=Clytia hemisphaerica|type=transcript|length=1708bp
GTGTCTCTGTTTGGCGGGAAAAAGGTTGTTTACCCCCGGAAAACAAAAAA
ACCAATCAGAAAACAGAATTTCTAAAGCTCAAAACATTTTTGGAATAGAG
GACAATGAGTAACCCCCTGAATTCAATTTTAAAGTGAACCAGTATGATAT
AAAAATGATCCCTGATCATTCGTCAGTTATCAAGGGCTGAAATGGCCCAC
CGGAGGGTGCTCTTTGTAGACTGGCGTTCAATCAATGGATCAGCCAACGG
AAAAAGGAAGCTGTCATTCAATGGAAATGAAAAAGGTAAATACACTTGTC
CAGCAAAACTTTGCCTTCATTCAGATTTTGCAAGTACGAGAGGTTTAAGG
AAACATATAGACAATAAACATCCTTGGTACTACTACTTCGATGAACAGCC
AGACGTTAAACGAGAAGATGTTGAGCTGAATCAGCCTGCTTTCAAAAGAA
AGGCGTCAACCAGCTCGAAACCTTACTATTCAATTGATGAGGGGATAGGA
AAAGCGTTTTATAAATGGTTAACCACTACCTGTGGCGGAGGCAAAAATGA
AAGAGAATCAAAACAGGTCGCAAAACGCGCTATGAAGTTTTTGATGAGCA
GTACAGGGGACAACGAATCTTTAGCATCCCTTTCTTATGAACTAATTGAT
TGTTGTCTTGGCTCAACAACCATTATATTGAAATTCTTGACTGTTTTAGA
GGATGAATGGAAAATGTCTTCTTCGGGGGCATTGAATTATGTCAAAGCTA
TTTTTGATTTAATGGATTATAGAAAGGCATTTGGAATCAACGATAACAAA
TTGAGGTGTTTTACGATTACTGAAGTTTACTTGAGAAGGGCGAAAGAAAA
TTTGCGAAAGAAGAAACGACTTGACAGCACTCGGAACtttgatttggaaa
atttgattgGACGTGACAGCTGGGCAAGCCTTGAGGAAATGGAAAGAGTC
ATCCCGTACCACATACCCCACTATAAAGACATCGTCAATAAATGTAAAGT
CCAACAACCTTTACCAAATAAGCAGGAATTGACATTTTGCACTCGTTTCA
TCACTACTTTCTTGTTCTTAAGGGTCAAGTGCAGTAGACCAATGACATTC
CAATATTTAACCTTATCAATGATCGCAAAAGCAAAACAACAAACCGATGG
TTTCATTGATCAAAGAGAATTCAAGACTGCAGGTAAATACCTTTTCGATA
CACTCATTTTAAGTGAAGAAGTATTTACTATACTAGACACCTACATCGAC
TTTGTGCGACCCCTTTTGAACCCATGTTGTGATTATTTGTTAGTATCTAC
AACAGGAGGTCAATACAAATCCTTGACTAATGCCATGACCTTACTTGTGC
ATCGAGCCATAGGAAAGTACATTCATCCAACTCGATATAGACAGATCGTT
GAGACTACAAGTGCAGATAGATTATCGAAATCGGAACAAGAAATTATCTC
TGAAGATCAAAAACACAGCTCGGAAGTTGCAAAAGTGCACTACAAAAAGA
AACAATCGAGAATGGTGGCAACAGCAGGTCAAAAATGTATGGAGAAAATG
CTGGGAACAGCTCGAAAAGACCAACAAGACACGGTATCAGAGGTATTTAG
AGACCTAGCAGCTATATCGAAAGCTCCCAGTCCCTTAGTTATTGGCCAAA
ATCCAGGACCTTCTCGTTTGAATACGATTGGTACTCACACCCCTTTTACT
GTTGATTC Run BLAST on NCBI protein sequence of TCONS_00048239-protein >TCONS_00048239-protein ID=TCONS_00048239-protein|Name=TCONS_00048239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp
MAHRRVLFVDWRSINGSANGKRKLSFNGNEKGKYTCPAKLCLHSDFASTR
GLRKHIDNKHPWYYYFDEQPDVKREDVELNQPAFKRKASTSSKPYYSIDE
GIGKAFYKWLTTTCGGGKNERESKQVAKRAMKFLMSSTGDNESLASLSYE
LIDCCLGSTTIILKFLTVLEDEWKMSSSGALNYVKAIFDLMDYRKAFGIN
DNKLRCFTITEVYLRRAKENLRKKKRLDSTRNFDLENLIGRDSWASLEEM
ERVIPYHIPHYKDIVNKCKVQQPLPNKQELTFCTRFITTFLFLRVKCSRP
MTFQYLTLSMIAKAKQQTDGFIDQREFKTAGKYLFDTLILSEEVFTILDT
YIDFVRPLLNPCCDYLLVSTTGGQYKSLTNAMTLLVHRAIGKYIHPTRYR
QIVETTSADRLSKSEQEIISEDQKHSSEVAKVHYKKKQSRMVATAGQKCM
EKMLGTARKDQQDTVSEVFRDLAAISKAPSPLVIGQNPGPSRLNTIGTHT
PFTVD Run BLAST on NCBI transcript from alignment at scaffold_141:139368..141075 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048239 ID=TCONS_00048239|Name=TCONS_00048239|organism=Clytia hemisphaerica|type=transcript|length=1708bp|location=Sequence derived from alignment at scaffold_141:139368..141075 (Clytia hemisphaerica)
GAATCAACAGTAAAAGGGGTGTGAGTACCAATCGTATTCAAACGAGAAGG
TCCTGGATTTTGGCCAATAACTAAGGGACTGGGAGCTTTCGATATAGCTG
CTAGGTCTCTAAATACCTCTGATACCGTGTCTTGTTGGTCTTTTCGAGCT
GTTCCCAGCATTTTCTCCATACATTTTTGACCTGCTGTTGCCACCATTCT
CGATTGTTTCTTTTTGTAGTGCACTTTTGCAACTTCCGAGCTGTGTTTTT
GATCTTCAGAGATAATTTCTTGTTCCGATTTCGATAATCTATCTGCACTT
GTAGTCTCAACGATCTGTCTATATCGAGTTGGATGAATGTACTTTCCTAT
GGCTCGATGCACAAGTAAGGTCATGGCATTAGTCAAGGATTTGTATTGAC
CTCCTGTTGTAGATACTAACAAATAATCACAACATGGGTTCAAAAGGGGT
CGCACAAAGTCGATGTAGGTGTCTAGTATAGTAAATACTTCTTCACTTAA
AATGAGTGTATCGAAAAGGTATTTACCTGCAGTCTTGAATTCTCTTTGAT
CAATGAAACCATCGGTTTGTTGTTTTGCTTTTGCGATCATTGATAAGGTT
AAATATTGGAATGTCATTGGTCTACTGCACTTGACCCTTAAGAACAAGAA
AGTAGTGATGAAACGAGTGCAAAATGTCAATTCCTGCTTATTTGGTAAAG
GTTGTTGGACTTTACATTTATTGACGATGTCTTTATAGTGGGGTATGTGG
TACGGGATGACTCTTTCCATTTCCTCAAGGCTTGCCCAGCTGTCACGTCc
aatcaaattttccaaatcaaaGTTCCGAGTGCTGTCAAGTCGTTTCTTCT
TTCGCAAATTTTCTTTCGCCCTTCTCAAGTAAACTTCAGTAATCGTAAAA
CACCTCAATTTGTTATCGTTGATTCCAAATGCCTTTCTATAATCCATTAA
ATCAAAAATAGCTTTGACATAATTCAATGCCCCCGAAGAAGACATTTTCC
ATTCATCCTCTAAAACAGTCAAGAATTTCAATATAATGGTTGTTGAGCCA
AGACAACAATCAATTAGTTCATAAGAAAGGGATGCTAAAGATTCGTTGTC
CCCTGTACTGCTCATCAAAAACTTCATAGCGCGTTTTGCGACCTGTTTTG
ATTCTCTTTCATTTTTGCCTCCGCCACAGGTAGTGGTTAACCATTTATAA
AACGCTTTTCCTATCCCCTCATCAATTGAATAGTAAGGTTTCGAGCTGGT
TGACGCCTTTCTTTTGAAAGCAGGCTGATTCAGCTCAACATCTTCTCGTT
TAACGTCTGGCTGTTCATCGAAGTAGTAGTACCAAGGATGTTTATTGTCT
ATATGTTTCCTTAAACCTCTCGTACTTGCAAAATCTGAATGAAGGCAAAG
TTTTGCTGGACAAGTGTATTTACCTTTTTCATTTCCATTGAATGACAGCT
TCCTTTTTCCGTTGGCTGATCCATTGATTGAACGCCAGTCTACAAAGAGC
ACCCTCCGGTGGGCCATTTCAGCCCTTGATAACTGACGAATGATCAGGGA
TCATTTTTATATCATACTGGTTCACTTTAAAATTGAATTCAGGGGGTTAC
TCATTGTCCTCTATTCCAAAAATGTTTTGAGCTTTAGAAATTCTGTTTTC
TGATTGGTTTTTTTGTTTTCCGGGGGTAAACAACCTTTTTCCCGCCAAAC
AGAGACAC Coding sequence (CDS) from alignment at scaffold_141:139368..141075 >TCONS_00048239 ID=TCONS_00048239|Name=TCONS_00048239|organism=Clytia hemisphaerica|type=CDS|length=1515bp|location=Sequence derived from alignment at scaffold_141:139368..141075 (Clytia hemisphaerica)
ATCAACAGTAAAAGGGGTGTGAGTACCAATCGTATTCAAACGAGAAGGTC
CTGGATTTTGGCCAATAACTAAGGGACTGGGAGCTTTCGATATAGCTGCT
AGGTCTCTAAATACCTCTGATACCGTGTCTTGTTGGTCTTTTCGAGCTGT
TCCCAGCATTTTCTCCATACATTTTTGACCTGCTGTTGCCACCATTCTCG
ATTGTTTCTTTTTGTAGTGCACTTTTGCAACTTCCGAGCTGTGTTTTTGA
TCTTCAGAGATAATTTCTTGTTCCGATTTCGATAATCTATCTGCACTTGT
AGTCTCAACGATCTGTCTATATCGAGTTGGATGAATGTACTTTCCTATGG
CTCGATGCACAAGTAAGGTCATGGCATTAGTCAAGGATTTGTATTGACCT
CCTGTTGTAGATACTAACAAATAATCACAACATGGGTTCAAAAGGGGTCG
CACAAAGTCGATGTAGGTGTCTAGTATAGTAAATACTTCTTCACTTAAAA
TGAGTGTATCGAAAAGGTATTTACCTGCAGTCTTGAATTCTCTTTGATCA
ATGAAACCATCGGTTTGTTGTTTTGCTTTTGCGATCATTGATAAGGTTAA
ATATTGGAATGTCATTGGTCTACTGCACTTGACCCTTAAGAACAAGAAAG
TAGTGATGAAACGAGTGCAAAATGTCAATTCCTGCTTATTTGGTAAAGGT
TGTTGGACTTTACATTTATTGACGATGTCTTTATAGTGGGGTATGTGGTA
CGGGATGACTCTTTCCATTTCCTCAAGGCTTGCCCAGCTGTCACGTCcaa
tcaaattttccaaatcaaaGTTCCGAGTGCTGTCAAGTCGTTTCTTCTTT
CGCAAATTTTCTTTCGCCCTTCTCAAGTAAACTTCAGTAATCGTAAAACA
CCTCAATTTGTTATCGTTGATTCCAAATGCCTTTCTATAATCCATTAAAT
CAAAAATAGCTTTGACATAATTCAATGCCCCCGAAGAAGACATTTTCCAT
TCATCCTCTAAAACAGTCAAGAATTTCAATATAATGGTTGTTGAGCCAAG
ACAACAATCAATTAGTTCATAAGAAAGGGATGCTAAAGATTCGTTGTCCC
CTGTACTGCTCATCAAAAACTTCATAGCGCGTTTTGCGACCTGTTTTGAT
TCTCTTTCATTTTTGCCTCCGCCACAGGTAGTGGTTAACCATTTATAAAA
CGCTTTTCCTATCCCCTCATCAATTGAATAGTAAGGTTTCGAGCTGGTTG
ACGCCTTTCTTTTGAAAGCAGGCTGATTCAGCTCAACATCTTCTCGTTTA
ACGTCTGGCTGTTCATCGAAGTAGTAGTACCAAGGATGTTTATTGTCTAT
ATGTTTCCTTAAACCTCTCGTACTTGCAAAATCTGAATGAAGGCAAAGTT
TTGCTGGACAAGTGTATTTACCTTTTTCATTTCCATTGAATGACAGCTTC
CTTTTTCCGTTGGCTGATCCATTGATTGAACGCCAGTCTACAAAGAGCAC
CCTCCGGTGGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048239-exon-scaffold_141-1491911889:139368..141075 | TCONS_00048239-exon-scaffold_141-1491911889:139368..141075 | Clytia hemisphaerica | exon |
| TCONS_00048239-exon-scaffold_141-1510915933:139368..141075 | TCONS_00048239-exon-scaffold_141-1510915933:139368..141075 | Clytia hemisphaerica | exon |
| TCONS_00048239-exon-scaffold_141-1575043694:139368..141075 | TCONS_00048239-exon-scaffold_141-1575043694:139368..141075 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:139368..141075 . |
Blast
The following BLAST results are available for this feature:
|
