TCONS_00048240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048240
Unique NameTCONS_00048240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048240 ID=TCONS_00048240|Name=TCONS_00048240|organism=Clytia hemisphaerica|type=transcript|length=274bp
ATCAAAAGATTCATGTCCCCACATATGATTGGACGGAACATTTCATACAG
AAAAAGTTTAAACCAATCGAAAATCTCCTCGAGTACCATCACTTTCGAAT
GTCGTCTGATGAACCTGGTTTTGTGTATTGCTCAAAAACATTTGATGATT
TACCAACCAAAATATGTATTGTTGAGGATTTTCGTCAAGTCTCTCATGAT
TTGCCATCTGTTGTGGAACCAAAAGGATTTTCAAGGCAACGGAAGGAATA
TCTTTACACAGATATAAGAGAATT
Run BLAST on NCBI

transcript from alignment at scaffold_141:148820..149093

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048240 ID=TCONS_00048240|Name=TCONS_00048240|organism=Clytia hemisphaerica|type=transcript|length=274bp|location=Sequence derived from alignment at scaffold_141:148820..149093 (Clytia hemisphaerica)
AATTCTCTTATATCTGTGTAAAGATATTCCTTCCGTTGCCTTGAAAATCC
TTTTGGTTCCACAACAGATGGCAAATCATGAGAGACTTGACGAAAATCCT
CAACAATACATATTTTGGTTGGTAAATCATCAAATGTTTTTGAGCAATAC
ACAAAACCAGGTTCATCAGACGACATTCGAAAGTGATGGTACTCGAGGAG
ATTTTCGATTGGTTTAAACTTTTTCTGTATGAAATGTTCCGTCCAATCAT
ATGTGGGGACATGAATCTTTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030702XLOC_030702Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048240-exon-scaffold_141-1491911889:148820..149093TCONS_00048240-exon-scaffold_141-1491911889:148820..149093Clytia hemisphaericaexon
TCONS_00048240-exon-scaffold_141-1510915933:148820..149093TCONS_00048240-exon-scaffold_141-1510915933:148820..149093Clytia hemisphaericaexon
TCONS_00048240-exon-scaffold_141-1575043694:148820..149093TCONS_00048240-exon-scaffold_141-1575043694:148820..149093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:148820..149093 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.535875	0	0	0	7.94922	6.85264	22.7354	27.0895	10.8377	10.6275	14.1157	9.27913	10.3354	15.9151	0.912862	0	0.804558	1.23697	1.13929	0	0	0.758153	0	0.5586	12.0822	12.837	0.73479	0.784188	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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