TCONS_00048242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048242
Unique NameTCONS_00048242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length675

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048242 ID=TCONS_00048242|Name=TCONS_00048242|organism=Clytia hemisphaerica|type=transcript|length=675bp
AATAGAGCGAATATTAGAACTTGTATAAACTTGTTGCCAATCAATAGATT
TCAGAGGGTTGGGTTTGCACTTTTTAGAAGATCTCAAACTTAGACAAATG
TGTGCAGAAACGACTCTGTGGTCTGAGCcaacagaagaaaaagaaaaata
tgactGAGCATTTCTGACACTGTTTTTCCATTTATTTCGGACAAGGACAT
AGTCTATTTGGGATTTAGATCCAGAGGGATGTTGGAAAGTCCAAAGCTTA
TtagtatttttcataaaaagtgtATTTGTAGCAACAAGCTGATGTTGTAA
CATAAAATCAAAGAGTTTATTACCATTTCTATTTGGAATCGCTAATCGCT
AAACTTCATGCGTATGGACTTGGAAATAAAAGCCTCGCTCTTATCCATAG
CTATCTTTCAAATAGGAAACACTGGGTCAGAGTGGGTTCATATTACAGTA
GTTGGCTACCTTTGCTATTTGGAGTGCCTCAAGGATCTGTTTTAGGTCTA
Atccttttcaatgtttttatcaatgatttattttattttgtaaatgaaga
tgaCCTCTGTAACTTCGCCGATGATAATACTCTTCATAAATGTGCTTCTT
CCTTGCAAGAAgtcattgaagccttaaaattagACTTGCAAGTTATTCTC
GCTTGGTTTGAACATAACTCTCTTG
Run BLAST on NCBI

protein sequence of TCONS_00048242-protein

>TCONS_00048242-protein ID=TCONS_00048242-protein|Name=TCONS_00048242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MLQHQLVATNTLFMKNTNKLWTFQHPSGSKSQIDYVLVRNKWKNSVRNAQ
SYFSFSSVGSDHRVVSAHICLSLRSSKKCKPNPLKSIDWQQVYTSSNIRS
I
Run BLAST on NCBI

transcript from alignment at scaffold_141:169724..170398

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048242 ID=TCONS_00048242|Name=TCONS_00048242|organism=Clytia hemisphaerica|type=transcript|length=675bp|location=Sequence derived from alignment at scaffold_141:169724..170398 (Clytia hemisphaerica)
CAAGAGAGTTATGTTCAAACCAAGCGAGAATAACTTGCAAGTctaatttt
aaggcttcaatgacTTCTTGCAAGGAAGAAGCACATTTATGAAGAGTATT
ATCATCGGCGAAGTTACAGAGGtcatcttcatttacaaaataaaataaat
cattgataaaaacattgaaaaggaTTAGACCTAAAACAGATCCTTGAGGC
ACTCCAAATAGCAAAGGTAGCCAACTACTGTAATATGAACCCACTCTGAC
CCAGTGTTTCCTATTTGAAAGATAGCTATGGATAAGAGCGAGGCTTTTAT
TTCCAAGTCCATACGCATGAAGTTTAGCGATTAGCGATTCCAAATAGAAA
TGGTAATAAACTCTTTGATTTTATGTTACAACATCAGCTTGTTGCTACAA
ATacactttttatgaaaaatactaATAAGCTTTGGACTTTCCAACATCCC
TCTGGATCTAAATCCCAAATAGACTATGTCCTTGTCCGAAATAAATGGAA
AAACAGTGTCAGAAATGCTCagtcatatttttctttttcttctgttgGCT
CAGACCACAGAGTCGTTTCTGCACACATTTGTCTAAGTTTGAGATCTTCT
AAAAAGTGCAAACCCAACCCTCTGAAATCTATTGATTGGCAACAAGTTTA
TACAAGTTCTAATATTCGCTCTATT

Coding sequence (CDS) from alignment at scaffold_141:169724..170398

>TCONS_00048242 ID=TCONS_00048242|Name=TCONS_00048242|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_141:169724..170398 (Clytia hemisphaerica)
ATGTTACAACATCAGCTTGTTGCTACAAATacactttttatgaaaaatac
taATAAGCTTTGGACTTTCCAACATCCCTCTGGATCTAAATCCCAAATAG
ACTATGTCCTTGTCCGAAATAAATGGAAAAACAGTGTCAGAAATGCTCag
tcatatttttctttttcttctgttgGCTCAGACCACAGAGTCGTTTCTGC
ACACATTTGTCTAAGTTTGAGATCTTCTAAAAAGTGCAAACCCAACCCTC
TGAAATCTATTGATTGGCAACAAGTTTATACAAGTTCTAATATTCGCTCT
ATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030704XLOC_030704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048242-exon-scaffold_141-1491911889:169724..170398TCONS_00048242-exon-scaffold_141-1491911889:169724..170398Clytia hemisphaericaexon
TCONS_00048242-exon-scaffold_141-1510915933:169724..170398TCONS_00048242-exon-scaffold_141-1510915933:169724..170398Clytia hemisphaericaexon
TCONS_00048242-exon-scaffold_141-1575043694:169724..170398TCONS_00048242-exon-scaffold_141-1575043694:169724..170398Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048242-proteinTCONS_00048242-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:169724..170398 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.749964	0.895056	1.09211	0.553578	0.80255	0.324521	0.293641	0.297897	0.760132	0.782989	0.601154	0.859571	0.50927	0.105166	0.172922	0.253128	0.244114	0.479823	0.346763	0.296995	1.19305	0.904233	0.326443	0.748137	0.4087	0.457475	0.652532	0.3948	0.497804	0.805349
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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