TCONS_00048243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048243
Unique NameTCONS_00048243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048243 ID=TCONS_00048243|Name=TCONS_00048243|organism=Clytia hemisphaerica|type=transcript|length=369bp
CAACTGTAGAATTATACGATGGACTTTTAGACATTTGTTTAGCATCGCTC
ACATCAATACACAGTCCATGGTATCCACGTTCGATGAATTTGTGCTCTTT
GTTAATAAATACAAATTCGATGCGGTAACACTCACCGAAACCTGGCTAAA
AGACAATCCTTTCTTGCTTGATTATGTTAAAATTGAAGGTTACAAACTTT
ACTATCATAACCGAGACAACAGGCGTGGTGGCGGTGTCGGCATATACATC
AAAGATGACATCAAGCTCAAAATACGCAAAGATATCACCAACATCAACCC
AGCCCTCGAACATCTATGGGTTGAAATTGAAGGAAAAAACAAACATTCTA
AACTACTCCTCAATGTTGC
Run BLAST on NCBI

protein sequence of TCONS_00048243-protein

>TCONS_00048243-protein ID=TCONS_00048243-protein|Name=TCONS_00048243-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
NCRIIRWTFRHLFSIAHINTQSMVSTFDEFVLFVNKYKFDAVTLTETWLK
DNPFLLDYVKIEGYKLYYHNRDNRRGGGVGIYIKDDIKLKIRKDITNINP
ALEHLWVEIEGKNKHSKLLLNV
Run BLAST on NCBI

transcript from alignment at scaffold_141:195629..195997

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048243 ID=TCONS_00048243|Name=TCONS_00048243|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at scaffold_141:195629..195997 (Clytia hemisphaerica)
GCAACATTGAGGAGTAGTTTAGAATGTTTGTTTTTTCCTTCAATTTCAAC
CCATAGATGTTCGAGGGCTGGGTTGATGTTGGTGATATCTTTGCGTATTT
TGAGCTTGATGTCATCTTTGATGTATATGCCGACACCGCCACCACGCCTG
TTGTCTCGGTTATGATAGTAAAGTTTGTAACCTTCAATTTTAACATAATC
AAGCAAGAAAGGATTGTCTTTTAGCCAGGTTTCGGTGAGTGTTACCGCAT
CGAATTTGTATTTATTAACAAAGAGCACAAATTCATCGAACGTGGATACC
ATGGACTGTGTATTGATGTGAGCGATGCTAAACAAATGTCTAAAAGTCCA
TCGTATAATTCTACAGTTG

Coding sequence (CDS) from alignment at scaffold_141:195629..195997

>TCONS_00048243 ID=TCONS_00048243|Name=TCONS_00048243|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_141:195629..195997 (Clytia hemisphaerica)
AACATTGAGGAGTAGTTTAGAATGTTTGTTTTTTCCTTCAATTTCAACCC
ATAGATGTTCGAGGGCTGGGTTGATGTTGGTGATATCTTTGCGTATTTTG
AGCTTGATGTCATCTTTGATGTATATGCCGACACCGCCACCACGCCTGTT
GTCTCGGTTATGATAGTAAAGTTTGTAACCTTCAATTTTAACATAATCAA
GCAAGAAAGGATTGTCTTTTAGCCAGGTTTCGGTGAGTGTTACCGCATCG
AATTTGTATTTATTAACAAAGAGCACAAATTCATCGAACGTGGATACCAT
GGACTGTGTATTGATGTGAGCGATGCTAAACAAATGTCTAAAAGTCCATC
GTATAATTCTACAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030705XLOC_030705Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048243-proteinTCONS_00048243-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048243-exon-scaffold_141-1491911889:195629..195997TCONS_00048243-exon-scaffold_141-1491911889:195629..195997Clytia hemisphaericaexon
TCONS_00048243-exon-scaffold_141-1510915933:195629..195997TCONS_00048243-exon-scaffold_141-1510915933:195629..195997Clytia hemisphaericaexon
TCONS_00048243-exon-scaffold_141-1575043694:195629..195997TCONS_00048243-exon-scaffold_141-1575043694:195629..195997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:195629..195997 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.792324	0.822639	0.78123	0	0.789749	0	0	0.233255	0.815341	1.87417	0	0.515205	1.28296	0	0	0	0	0	0	0	1.30699	0	0	0.329927	0	0.998084	0	1.3679	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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