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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048162 ID=TCONS_00048162|Name=TCONS_00048162|organism=Clytia hemisphaerica|type=transcript|length=4390bpRun BLAST on NCBI transcript from alignment at scaffold_141:211084..241304+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048162 ID=TCONS_00048162|Name=TCONS_00048162|organism=Clytia hemisphaerica|type=transcript|length=30221bp|location=Sequence derived from alignment at scaffold_141:211084..241304+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00048162 vs. Swiss-Prot (Human)
Match: MATN2 (Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=4) HSP 1 Score: 181.415 bits (459), Expect = 3.596e-46 Identity = 99/248 (39.92%), Postives = 127/248 (51.21%), Query Frame = 3
Query: 582 CSVTCQNKNNGYNCVCSKGYYKKKSHDRTCQDFNECSRNKGGCSNFCHNTPGSFYCACPPGYQLDTDKKTCIDKNECLVQNGGCEHECKNTDGSYQCLCKKGFILDGNNHTCSDHDECGTSSHGCQHHCENFHGSYQCACAKGFQLNADNKTCSDTNECEVRNVTTISPITNQTITKEISLAGCEQKCNNLNGSFNCSCDSGYKLNEDGISCDNLDECDLGTHNCQQLCLDIPGSFECECRLGYEVNK 1325
C+ C N Y C C +GY S TC+ + C+ C C N PGSF C C GY L D K C+ + C +N GCEHEC N DGSY C C +GF L+ + TC+ D C +S+HGCQH C N SY C C KGF LN D KTC N C + GCE +C N+ S+ C C GY L+ +G +C +D C H C+QLCL+ SF C+C G+ +N+
Sbjct: 249 CAHFCINIPGSYVCRCKQGYILN-SDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNK------------------PGCEHECVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINE 477 HSP 2 Score: 177.948 bits (450), Expect = 4.185e-45 Identity = 166/608 (27.30%), Postives = 242/608 (39.80%), Query Frame = 3
Query: 327 TCTCPSGWTGPVCKSDINECNINKGGCVNAY-----CRNRRGYHYCQCYQNHRRSRNNRLVCERIDVCAENKNACKCPDYSRSRTPVAVPCSVTCQNKNNGYNCVCSKGYYKKKSHDRTCQDFNECSRNKGGCSNFCHNTPGSFYCACPPGYQLDTDKKTCIDKNECLVQNGGCEHECKNTDGSYQCLCKKGFILDGNNHTCSDHDECGTSSHGCQHHCENFHGSYQCACAKGFQLNADNKTCSDTNECEVRNVTTISPITNQTITKEISLAGCEQKCNNLNGSFNCSCDSGYKLNEDGISCDNLDECDLGTHNCQQLCLDIPGSFECECRLGYEVNKLSPNLCIAKQCNPLNALQNGNSTC--LSGGTDDKCTVTCNEGFTLQGSQIRTCQFDGTWSGVQTTCKRRDCPELVPPSFGHITLPCSQLFNSS-CKITCDEGLVL--NGNKMTKCIVGNDGRMEWTNPTPNCTARGPCNPSPCLHQTKCSAPTNTTYKCDCEGSVYTGKNCQIRKIETD--ESMLLLTSVADDQTLKLTTATNGRELHIKAIASSSNLKVDPTEIKFLGKNTEFVLTVKASKPGFYNLTFEFTNGNDSQKFSLPSPIAVI 2114
C C G+ + SD C I + + C N G CQCY + + + + C +D CA + C+ C N + Y C C +G+ +TC + C+ + GC + C NT S+ C C G+ L+ DKKTC N C + GCEHEC N + SY C C +G+ LD N TCS D C HGC+ C N S+ C C++GF +N D KTCS + C +S GCE C N++ SF C C G+ L DG +C LD C LG H C+ C+ SF C+C GY + + K C + Q + C + +DD T C EGF L R C+R+D + HI C NS CK C EG VL +G + KC G P + + D S+ +++ T +S+ + A L+ +T + E ++ S+ ++K +K++GK + L +K + FT G ++ S P A I
Sbjct: 261 VCRCKQGY---ILNSDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKR-CVAVDYCASENHGCE----------------HECVNADGSYLCQCHEGFALNPD-KKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYC------------------LLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILRE------DGKTCRRKDVCQAIDHGCEHICVNSDDSYTCECLEGFRLAEDGKR--------------CRRKDVCKSTHHGCEHI---CVNNGNSYICK--CSEGFVLAEDGRRCKKCTEG---------------------------------PIDLVFVIDGSKSLGEENFEVVKQFVTGIIDSLTISPKAARVGLLQYSTQVHT-EFTLRNFNSAKDMKKAVAHMKYMGKGSMTGLALK------HMFERSFTQGEGARPLSTRVPRAAI 764 HSP 3 Score: 146.747 bits (369), Expect = 2.296e-35 Identity = 90/266 (33.83%), Postives = 133/266 (50.00%), Query Frame = 3
Query: 687 CSRNKGGCSNFCHNTPGSFYCACPPGYQLDTDKKTCIDKNECLVQNGGCEHECKNTDGSYQCLCKKGFILDGNNHTCSDHDECGTSSHGCQHHCENFHGSYQCACAKGFQLNADNKTCSDTNECEVRNVTTISPITNQTITKEISLAGCEQKCNNLNGSFNCSCDSGYKLNEDGISCDNLDECDLGTHNCQQLCLDIPGSFECECRLGYEVNKLSPNLCIAKQCNPLN--ALQNGNSTCLSGGTDDKCTVTCNEGFTLQGSQIRTC 1478
CS + C++FC N PGS+ C C GY L++D+ TC ++ C +++ CE C N GS+ C C G+ L + C D C + +HGC+H C N GSY C C +GF LN D KTC+ + C N GC+ +C N + S++C C G+ LN D +C ++ C L C+ C+++ S+ C C GY L PN K C+ ++ A Q+ L T+D C+EGF L ++TC
Sbjct: 242 CSTLEHNCAHFCINIPGSYVCRCKQGYILNSDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSN------------------HGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGY---TLDPN---GKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGF-LINEDLKTC 482 The following BLAST results are available for this feature:
BLAST of TCONS_00048162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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