TCONS_00048245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048245
Unique NameTCONS_00048245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048245 ID=TCONS_00048245|Name=TCONS_00048245|organism=Clytia hemisphaerica|type=transcript|length=408bp
TATTGTTTTGAGTCACATTTAAGCTCAATATTCTAATTGAATTAAAGTAA
ATCTCAatgaatacaaaaaaataaaagtaaatatcaaTATAAATtagatc
aaaattaaaaattaggtCACCCCCAACCAAACGACAAAAAATGATCGGCC
CAACTCTCGTAACTAAAAACTTTATTGAATAGgaggaaaataaataaatt
gtttATTCACGGAATTAAGGGGCGAAGATAAAAGTTTTCGCCCGGCCGTA
GGAACGTTCTTTTATTAATTTAGTCAAATGAAAAtatacttaagggctct
gaccatagtcagaaaattgattttagtatctgaacataaaagttatgttt
tagattctttaacacttttaacaaagaattgcctttataaatcgcttttt
aatcaaac
Run BLAST on NCBI

transcript from alignment at scaffold_141:292857..293264

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048245 ID=TCONS_00048245|Name=TCONS_00048245|organism=Clytia hemisphaerica|type=transcript|length=408bp|location=Sequence derived from alignment at scaffold_141:292857..293264 (Clytia hemisphaerica)
gtttgattaaaaagcgatttataaaggcaattctttgttaaaagtgttaa
agaatctaaaacataacttttatgttcagatactaaaatcaattttctga
ctatggtcagagcccttaagtataTTTTCATTTGACTAAATTAATAAAAG
AACGTTCCTACGGCCGGGCGAAAACTTTTATCTTCGCCCCTTAATTCCGT
GAATaaacaatttatttattttcctcCTATTCAATAAAGTTTTTAGTTAC
GAGAGTTGGGCCGATCATTTTTTGTCGTTTGGTTGGGGGTGacctaattt
ttaattttgatctaATTTATAttgatatttacttttatttttttgtattc
atTGAGATTTACTTTAATTCAATTAGAATATTGAGCTTAAATGTGACTCA
AAACAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030707XLOC_030707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048245-exon-scaffold_141-1491911889:292857..293264TCONS_00048245-exon-scaffold_141-1491911889:292857..293264Clytia hemisphaericaexon
TCONS_00048245-exon-scaffold_141-1510915933:292857..293264TCONS_00048245-exon-scaffold_141-1510915933:292857..293264Clytia hemisphaericaexon
TCONS_00048245-exon-scaffold_141-1575043694:292857..293264TCONS_00048245-exon-scaffold_141-1575043694:292857..293264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:292857..293264 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.39316	3.84884	11.1476	10.1699	47.3524	39.3368	22.234	27.7342	6.98812	11.7633	9.54133	8.73344	5.01656	7.03292	10.6061	12.2036	10.6954	13.3398	8.03171	9.97025	16.5781	13.3991	8.03479	7.5267	3.43032	4.77192	12.7747	12.4033	13.4558	13.9845
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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