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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048247 ID=TCONS_00048247|Name=TCONS_00048247|organism=Clytia hemisphaerica|type=transcript|length=1637bp
ttcaaggcgtaaagcaaaggccttttactctatttctttattcaaagtca
aaaattttgcctttccgaaaaaaaatctgccgatttttcCATCACATGAC
ctggtgtcagccatatttaaaattttttttttggtttttcaaaaccccta
ttacatgtgaaaaaaacgaggtattacttatcgtgatatcttttatcaat
cactttctattgcaattttagtgaagtcagtcaaaaatcaaatttttgtt
tgcgtcatatagccgtgaaatcatgcgtccggaaagggttaaaaagcTAA
AATTAGCTGACAAATTTATGGGACAGCAATCTCAGAAAATCATTTATTTA
ATTTCAGAATGATTTTCTTATAATGAACAAAATTCAACAGATGACCAATC
CAAATTTAAGTTATCTTTACCCAATTAAAAGGGTTTGATTCTTTAAAAAT
CGAGCAAACTTAAGAAATTCAACTCCAAAGAGGGTAATTTATTTCTGGTA
CACTCTGTAAAAGCCGTCCATAAAAcaatttgaattcgaaattgtAACAA
AATGCTGAAGTGAAATCCTATAAACTTTTCGACTTATGCTGCGAATCAGT
TTACCAGGATAAAGGATTTCAAACACTACATTTGTAATCAAAATGATAGT
GTTTTTTCAATATTTGCTGACGATGCTCTTCAGACAGAATCTTTTCACAA
TGAACAATATCATCATCCATGGTGTCACCAAATACAACTGACTTAAACTC
GTCATCCCACATAGAAAGAACACAGTTTTGTCTTATTGACTCAAAACCTA
AACGCTTCTTGAAAAAGAAGTCATCATTGCTTAAGTGATACTGCAAAATG
TCATCTACATCTTGAAGATCAATCTCCTTGGACATGTTCATTTGGAATTC
ATGATACCATTCGCCAGGGTTTTGTGCAGGATAAAAAAGTGATCGATATT
TGTCCTTACTTTGCAAAACCCAAATGGAATCattcaattttgataattta
AATGATCCATTTCTGCCTTGATCAGTAACTCCCTCAGCTAACTTTATAGG
GCTGTAAAAACCTCTAAGGCAATAGCCAACATCAACAAGATAACACTCAT
TTGTAAAATGGACTATCAAACAAATATGGTTGGGATCTGGCATAAGTTTG
TTGCTTAACCCACTGTAAACATTGCAAGGATACATTACAACATTGTAGCC
AAGGTCTTTGAGTAGACAATAAAATGAACtgtttatttcaaaacaaaatc
caCCTTCCTTCTTTAAAATAACTTTTCTCAGTAAATAGtctttggtaatt
ttcatgtcTTTCCCCAAATAACAAGCACTGCTATTGAACACAACACGTTC
TAAATGTTTTTGTTGTAATgcaaataaattttcaatgctTACAGGTCTTA
CATCATTATTGAAATTTAATAtctcgaaatatttttcaacaaattcagtc
attttaaacttaaaaatgaaattttcaataagtGATGAGAGTAAAATGGA
GAcatttgagaaaaagaaaaaaagaaaaaaatcataaaaaatggaTAATT
TTGTAACAAACCAATTATTAGACTTCAAACTTTTGTGGTCATTCCTCAAG
CCCTAAGCTTGGTTAGgactagcccggggtccactta Run BLAST on NCBI protein sequence of TCONS_00048247-protein >TCONS_00048247-protein ID=TCONS_00048247-protein|Name=TCONS_00048247-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MTEFVEKYFEILNFNNDVRPVSIENLFALQQKHLERVVFNSSACYLGKDM
KITKDYLLRKVILKKEGGFCFEINSSFYCLLKDLGYNVVMYPCNVYSGLS
NKLMPDPNHICLIVHFTNECYLVDVGYCLRGFYSPIKLAEGVTDQGRNGS
FKLSKLNDSIWVLQSKDKYRSLFYPAQNPGEWYHEFQMNMSKEIDLQDVD
DILQYHLSNDDFFFKKRLGFESIRQNCVLSMWDDEFKSVVFGDTMDDDIV
HCEKILSEEHRQQILKKHYHFDYKCSV Run BLAST on NCBI transcript from alignment at scaffold_141:301951..303587 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048247 ID=TCONS_00048247|Name=TCONS_00048247|organism=Clytia hemisphaerica|type=transcript|length=1637bp|location=Sequence derived from alignment at scaffold_141:301951..303587 (Clytia hemisphaerica)
taagtggaccccgggctagtcCTAACCAAGCTTAGGGCTTGAGGAATGAC
CACAAAAGTTTGAAGTCTAATAATTGGTTTGTTACAAAATTAtccatttt
ttatgatttttttctttttttctttttctcaaatgTCTCCATTTTACTCT
CATCacttattgaaaatttcatttttaagtttaaaatgactgaatttgtt
gaaaaatatttcgagaTATTAAATTTCAATAATGATGTAAGACCTGTAag
cattgaaaatttatttgcATTACAACAAAAACATTTAGAACGTGTTGTGT
TCAATAGCAGTGCTTGTTATTTGGGGAAAgacatgaaaattaccaaagaC
TATTTACTGAGAAAAGTTATTTTAAAGAAGGAAGGtggattttgttttga
aataaacaGTTCATTTTATTGTCTACTCAAAGACCTTGGCTACAATGTTG
TAATGTATCCTTGCAATGTTTACAGTGGGTTAAGCAACAAACTTATGCCA
GATCCCAACCATATTTGTTTGATAGTCCATTTTACAAATGAGTGTTATCT
TGTTGATGTTGGCTATTGCCTTAGAGGTTTTTACAGCCCTATAAAGTTAG
CTGAGGGAGTTACTGATCAAGGCAGAAATGGATCATTtaaattatcaaaa
ttgaatGATTCCATTTGGGTTTTGCAAAGTAAGGACAAATATCGATCACT
TTTTTATCCTGCACAAAACCCTGGCGAATGGTATCATGAATTCCAAATGA
ACATGTCCAAGGAGATTGATCTTCAAGATGTAGATGACATTTTGCAGTAT
CACTTAAGCAATGATGACTTCTTTTTCAAGAAGCGTTTAGGTTTTGAGTC
AATAAGACAAAACTGTGTTCTTTCTATGTGGGATGACGAGTTTAAGTCAG
TTGTATTTGGTGACACCATGGATGATGATATTGTTCATTGTGAAAAGATT
CTGTCTGAAGAGCATCGTCAGCAAATATTGAAAAAACACTATCATTTTGA
TTACAAATGTAGTGTTTGAAATCCTTTATCCTGGTAAACTGATTCGCAGC
ATAAGTCGAAAAGTTTATAGGATTTCACTTCAGCATTTTGTTacaatttc
gaattcaaattgTTTTATGGACGGCTTTTACAGAGTGTACCAGAAATAAA
TTACCCTCTTTGGAGTTGAATTTCTTAAGTTTGCTCGATTTTTAAAGAAT
CAAACCCTTTTAATTGGGTAAAGATAACTTAAATTTGGATTGGTCATCTG
TTGAATTTTGTTCATTATAAGAAAATCATTCTGAAATTAAATAAATGATT
TTCTGAGATTGCTGTCCCATAAATTTGTCAGCTAATTTTAgctttttaac
cctttccggacgcatgatttcacggctatatgacgcaaacaaaaatttga
tttttgactgacttcactaaaattgcaatagaaagtgattgataaaagat
atcacgataagtaatacctcgtttttttcacatgtaataggggttttgaa
aaaccaaaaaaaaaattttaaatatggctgacaccagGTCATGTGATGga
aaaatcggcagattttttttcggaaaggcaaaatttttgactttgaataa
agaaatagagtaaaaggcctttgctttacgccttgaa Coding sequence (CDS) from alignment at scaffold_141:301951..303587 >TCONS_00048247 ID=TCONS_00048247|Name=TCONS_00048247|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_141:301951..303587 (Clytia hemisphaerica)
atgactgaatttgttgaaaaatatttcgagaTATTAAATTTCAATAATGA
TGTAAGACCTGTAagcattgaaaatttatttgcATTACAACAAAAACATT
TAGAACGTGTTGTGTTCAATAGCAGTGCTTGTTATTTGGGGAAAgacatg
aaaattaccaaagaCTATTTACTGAGAAAAGTTATTTTAAAGAAGGAAGG
tggattttgttttgaaataaacaGTTCATTTTATTGTCTACTCAAAGACC
TTGGCTACAATGTTGTAATGTATCCTTGCAATGTTTACAGTGGGTTAAGC
AACAAACTTATGCCAGATCCCAACCATATTTGTTTGATAGTCCATTTTAC
AAATGAGTGTTATCTTGTTGATGTTGGCTATTGCCTTAGAGGTTTTTACA
GCCCTATAAAGTTAGCTGAGGGAGTTACTGATCAAGGCAGAAATGGATCA
TTtaaattatcaaaattgaatGATTCCATTTGGGTTTTGCAAAGTAAGGA
CAAATATCGATCACTTTTTTATCCTGCACAAAACCCTGGCGAATGGTATC
ATGAATTCCAAATGAACATGTCCAAGGAGATTGATCTTCAAGATGTAGAT
GACATTTTGCAGTATCACTTAAGCAATGATGACTTCTTTTTCAAGAAGCG
TTTAGGTTTTGAGTCAATAAGACAAAACTGTGTTCTTTCTATGTGGGATG
ACGAGTTTAAGTCAGTTGTATTTGGTGACACCATGGATGATGATATTGTT
CATTGTGAAAAGATTCTGTCTGAAGAGCATCGTCAGCAAATATTGAAAAA
ACACTATCATTTTGATTACAAATGTAGTGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048247-exon-scaffold_141-1491911889:301951..303587 | TCONS_00048247-exon-scaffold_141-1491911889:301951..303587 | Clytia hemisphaerica | exon |
| TCONS_00048247-exon-scaffold_141-1510915933:301951..303587 | TCONS_00048247-exon-scaffold_141-1510915933:301951..303587 | Clytia hemisphaerica | exon |
| TCONS_00048247-exon-scaffold_141-1575043694:301951..303587 | TCONS_00048247-exon-scaffold_141-1575043694:301951..303587 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:301951..303587 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001447 | Arylamine_N-AcTrfase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016407 | acetyltransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0016407 |
acetyltransferase activity |
Blast
The following BLAST results are available for this feature:
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