TCONS_00048248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048248
Unique NameTCONS_00048248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048248 ID=TCONS_00048248|Name=TCONS_00048248|organism=Clytia hemisphaerica|type=transcript|length=270bp
AAGTTCTTTGATTAGAGTATGTTGTATACGTATGCGTGTAGTtatggaaa
atatatattttttactaAATGGTTTTATGAATCACAAGTATTAGAAATAT
ATTgtttaaaatgaaataaaattgctGGTCCAATTTCATTGATGTGCCAA
AAATAAATTAGCCTTTTGAAGTGAAATTTCTCGAGTTCTATCAATTTTTG
AAGAATCAAACCTCtttcattggaaagaggaataataaacttaaactttg
atGGGTCATTTTTGTTGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_141:304518..304787

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048248 ID=TCONS_00048248|Name=TCONS_00048248|organism=Clytia hemisphaerica|type=transcript|length=270bp|location=Sequence derived from alignment at scaffold_141:304518..304787 (Clytia hemisphaerica)
ATTCAACAAAAATGACCCatcaaagtttaagtttattattcctctttcca
atgaaaGAGGTTTGATTCTTCAAAAATTGATAGAACTCGAGAAATTTCAC
TTCAAAAGGCTAATTTATTTTTGGCACATCAATGAAATTGGACCagcaat
tttatttcattttaaacAATATATTTCTAATACTTGTGATTCATAAAACC
ATTtagtaaaaaatatatattttccataACTACACGCATACGTATACAAC
ATACTCTAATCAAAGAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030710XLOC_030710Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048248-exon-scaffold_141-1491911889:304518..304787TCONS_00048248-exon-scaffold_141-1491911889:304518..304787Clytia hemisphaericaexon
TCONS_00048248-exon-scaffold_141-1510915933:304518..304787TCONS_00048248-exon-scaffold_141-1510915933:304518..304787Clytia hemisphaericaexon
TCONS_00048248-exon-scaffold_141-1575043694:304518..304787TCONS_00048248-exon-scaffold_141-1575043694:304518..304787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:304518..304787 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.26691	0.552647	0	0	0.764262	0	0	0	0.477569	0	1.14834	0.754873	0.753824	0	0.643612	1.03604	0	0.436062	1.20489	0	3.8356	2.40541	3.24899	1.77228	0	0	0	0	1.25804	1.28175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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