TCONS_00048249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048249
Unique NameTCONS_00048249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048249 ID=TCONS_00048249|Name=TCONS_00048249|organism=Clytia hemisphaerica|type=transcript|length=355bp
AAATTATTTGGCATCTTCCAGATTTCCAGGATTTTTCTTGAAGCTTTGTT
ATTTTTACTAGGCTAGGCCTCGAAATAACGATTccaagtgggtcggacaa
aatgtcagatcagggttgctttagcttgaaaattatgatttttgggtcgg
acatgaagctatttgggtcggacaatgtccgatgtctgaccgttatttcg
agccctgctAGGTTGACAGCTTTGGATAAATCTCAAGGATGAAATAATAC
AAAATAATGTTTTCCTTTTTATAAAAGACATATAAACTAAAGGTTTTTAA
CTTGATAATTCAGAAGGAATGAAGAAAACTGAGATTCAAATAAAACATAT
CTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_141:305056..305410

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048249 ID=TCONS_00048249|Name=TCONS_00048249|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at scaffold_141:305056..305410 (Clytia hemisphaerica)
TAAAGATATGTTTTATTTGAATCTCAGTTTTCTTCATTCCTTCTGAATTA
TCAAGTTAAAAACCTTTAGTTTATATGTCTTTTATAAAAAGGAAAACATT
ATTTTGTATTATTTCATCCTTGAGATTTATCCAAAGCTGTCAACCTagca
gggctcgaaataacggtcagacatcggacattgtccgacccaaatagctt
catgtccgacccaaaaatcataattttcaagctaaagcaaccctgatctg
acattttgtccgacccacttggAATCGTTATTTCGAGGCCTAGCCTAGTA
AAAATAACAAAGCTTCAAGAAAAATCCTGGAAATCTGGAAGATGCCAAAT
AATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030711XLOC_030711Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048249-exon-scaffold_141-1491911889:305056..305410TCONS_00048249-exon-scaffold_141-1491911889:305056..305410Clytia hemisphaericaexon
TCONS_00048249-exon-scaffold_141-1510915933:305056..305410TCONS_00048249-exon-scaffold_141-1510915933:305056..305410Clytia hemisphaericaexon
TCONS_00048249-exon-scaffold_141-1575043694:305056..305410TCONS_00048249-exon-scaffold_141-1575043694:305056..305410Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:305056..305410 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.54607	0.285679	0.385177	0	0.37726	0.58101	0.673415	0.328928	0.275296	0	0.25114	0.657937	0.682341	0.352839	0.458915	0	0	0.207081	0.804646	0	0.335122	0.48029	1.5512	0	0.548556	0	0	1.12821	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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