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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048169 ID=TCONS_00048169|Name=TCONS_00048169|organism=Clytia hemisphaerica|type=transcript|length=5043bpRun BLAST on NCBI protein sequence of TCONS_00048169-protein >TCONS_00048169-protein ID=TCONS_00048169-protein|Name=TCONS_00048169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1651bp MVVFKEIDSKILPLAVQKYLWDQISTVFQLKTQHASQETLATTGTVCQRLRun BLAST on NCBI transcript from alignment at scaffold_141:305770..339059+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048169 ID=TCONS_00048169|Name=TCONS_00048169|organism=Clytia hemisphaerica|type=transcript|length=33290bp|location=Sequence derived from alignment at scaffold_141:305770..339059+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_141:305770..339059+ >TCONS_00048169 ID=TCONS_00048169|Name=TCONS_00048169|organism=Clytia hemisphaerica|type=CDS|length=123825bp|location=Sequence derived from alignment at scaffold_141:305770..339059+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00048169 vs. Swiss-Prot (Human)
Match: UNC80 (Protein unc-80 homolog OS=Homo sapiens GN=UNC80 PE=1 SV=2) HSP 1 Score: 277.715 bits (709), Expect = 7.491e-75 Identity = 217/787 (27.57%), Postives = 355/787 (45.11%), Query Frame = 2
Query: 2975 WLSVIIDMNRSINFLCVHSTTQCPEDCPLEQVKSCNTLLHALKLLYEPGRLDDKELDHVDST------------------------------HAQKKDVVYEYITKQVGSFYHVPYSVLCKGAFVMDNQQLSDIVAASWEVLLYPDEQLKSAAACLFLVAASKMEATVSTFLTKELTCSGDIDRAKAIQRYEVLWNCRKTVYNHLEETSKTALKVPFPKIEYTVPSRFIGQQPDPEQLPDAPWNPDEQAFNELDVSDDEVSLYF-------HDSXXXXXXXXXXXXXXXXRMREDFPITSVPLNLDASVE---------------------------------------------TWMV--------EEIADENTPKETNAMACQIATAHQPFFPPAMNVGILRIIPLLDDASITTINSQSVGDLAHSLVWYCLVDDPQTFFRRFFEKITNKNKQEEXXXXXXXXXXXXXXXPGNAAVILFNNLIGLISFYERTNDKAQRMLYHDKIAEIMPLLWQIVPSVDKLYFNEMKQILRREHIDHTLMVTANVGCVKELIVLGHG--NKRENLNIMDEMTFKELLTQMKGAFEI---EAGNYWLVDKYSGLLLENNAKIRDVYVFKRGYQCPVLKLEELSDGFVLSKRQQQAKTGKQMSLNQLLLTMSIFDVLPN---KKHVMFLHSELYQQASFPRKAIEVDYELCYAPELGKEILDLDIIYKNTWVKFINSLLGHLSTMHHFGEDAIGIFLEPINGALLLHCEDVMILRSSIAALINVAREYGKKFSNDG 5041
WL V+I + +F+C H C C L +SC L+ A+KLLY +E ++ S +K + +YI QV S P S+L K A ++ + DI A+WE+LL DE + AAA +FL+ A K+ VS L E + R A+ ++ LW R V+ +EE ++ K+P P I +T+PS +G P + D PW P + +++D+ + H + ++ +K + RE IT++P+ +A E W V EE E+TP + Q FP + +L I+ L++D + + +V +A ++W CL++DP T R F EK+T N+Q+EL+ +LRKLL +I P + ILFN L+GLI ++ RT + D I+ + LW++V V+ L+F ++KQ +++E + L+VTA++ K L+V G + L + ++ F+ LL + F I ++ +Y+L+DK L+ N +RD+Y F+R P L L + Q+Q T K + ++L +S+ +P + HV L +L + SFPR AI+ ++ L P+ GKE+ LD + K+ W++ + + + + +G D I +FL NGAL+LH ED +LR A +IN A + FS G
Sbjct: 1459 WLHVMILLCNQQSFICTH-VDYCHPHCYLHHSRSCARLVRAIKLLYGDSVDSLRESSNISSVALRGKKQKECSDKSCLRTPSLKKRVSDANLEGKKDSGMLKYIRLQVMSLSPAPLSLLIKAAPILTEEMYGDIQPAAWELLLSMDEHMAGAAAAMFLLCAVKVPEAVSDMLMSEFHHPETVQRLNAVLKFHTLWRFRYQVWPRMEEGAQQIFKIPPPSINFTLPSPVLGMPSVP--MFDPPWVPQCSGSVQDPINEDQSKSFSARAVSRSHQRAEHILKNLQQEEEKKRLGREASLITAIPITQEACYEPTCTPNSEPEEEVEEVTNLASRRLSVSPSCTSSTSHRNYSFRRGSVWSVRSAVSAEDEEHTTEHTPNH------HVPQPPQAVFPACICAAVLPIVHLMEDGEVRE-DGVAVSAVAQQVLWNCLIEDPSTVLRHFLEKLTISNRQDELMYMLRKLLLNIGDFPAQTSHILFNYLVGLIMYFVRTPCE----WGMDAISATLTFLWEVVGYVEGLFFKDLKQTMKKEQCEVKLLVTASMPGTKTLVVHGQNECDIPTQLPVHEDTQFEALLKECLEFFNIPESQSTHYFLMDKRWNLIHYNKTYVRDIYPFRRSVS-PQLNLVHMHPEKGQELIQKQVFTRKLEEVGRVLFLISLTQKIPTAHKQSHVSMLQEDLLRLPSFPRSAIDAEFSLFSDPQAGKELFGLDTLQKSLWIQLLEEMFLGMPSEFPWG-DEIMLFLNVFNGALILHPEDSALLRQYAATVINTAVHFNHLFSLSG 2229 HSP 2 Score: 102.449 bits (254), Expect = 1.987e-21 Identity = 68/198 (34.34%), Postives = 101/198 (51.01%), Query Frame = 2
Query: 2075 GKSTNMHGLLA---GVQQLRCLFDLMSPGVLPDELIVGALLDLEAPVVSRASYLMELAYFVNKCNKEDWPMLLELMKSGHIKTSIHELTA-----------TKLQ--AGRLFYKWGIVIGRKLEDMLNEDRMSLEDLSKPVKREKVN-----------FLYQGDIGSVSSYCPQSLRFVACHLLKEITAYLRERHASL 2587
GKS N+ L A G+++ + L + PG +PD I+ A LDLEAPVV+RA+ +E A FV++CN+ +WP E MK H+ + L+ KLQ A +LFY+WG IG +L ++ + + S +L + E+ FL + CP +L+ AC LL EIT +LRE + L
Sbjct: 1169 GKSKNVVNLGAIRQGMKRFQFLLNCCEPGTIPDASILAAALDLEAPVVARAALFLECARFVHRCNRGNWP---EWMKGHHVNITKKGLSRGRSPIVGNKRNQKLQWNAAKLFYQWGDAIGVRLNELCHGESESPANLLGLIYDEETKRRLRKEDEEEDFLDDSTVNPSKCGCPFALKMAACQLLLEITTFLRETFSCL 1363 HSP 3 Score: 101.293 bits (251), Expect = 3.830e-21 Identity = 63/221 (28.51%), Postives = 98/221 (44.34%), Query Frame = 2
Query: 113 SKILPLAVQKYLWDQISTVFQLKTQHASQETLATTGTVCQRLEKMLVHNKVKELQKFFSPELFSEIKSIPRWTFIKGSLSYVIHCVAMILEKRYVLGMTDQLKPFVIKLLYTLHWIVTEAYKECSKPKDEGLD---------------------------------------------LTDIELFLHMCIPFLSNLNESDLTHSLQSGMHLWQPLWNNIPP 640
+ +PL +Q +LW Q S + K + + C E++LV NK+ L SP L I+SI RW ++ +L +V+HC A +L R LG D+L KLL+TLHW++ EA ++C+ + G D + +ELF+ + P + + ESDLT L SG+ +WQP+W + P
Sbjct: 15 GRGIPLPIQTFLWRQTSAFLRPKLGKQYEAS-------CVSFERVLVENKLHGL----SPALSEAIQSISRWELVQAALPHVLHCTATLLSNRNKLGHQDKLGVAETKLLHTLHWMLLEAPQDCNNERFGGTDRGSSWGGSSSAFIHQVENQGSPGQPCQSSSNDEEENNRRKIFQNSMATVELFVFLFAPLVHRIKESDLTFRLASGLVIWQPMWEHRQP 224 The following BLAST results are available for this feature:
BLAST of TCONS_00048169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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