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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048170 ID=TCONS_00048170|Name=TCONS_00048170|organism=Clytia hemisphaerica|type=transcript|length=729bp
TTCAGAGGCTAAGACTAGCAATGTGATTGGTTATCACCTAGGAAACATTG
CGTTATCTTGAAACACAAAGAGAGAGAGTGATGGTATAAATAAGCGTACA
TCTTGTGTACATCAAGCACAAGTACAACGATAAAAGTAAAGAAGAACACG
CATAAAGGTTGATTCTGTACAAACGCCTCAGAGGAGCCTCGTCCATTAAC
CATTGAAGTAAATTTCAAGTCCACTACAAACATAAAATGCAGCCATCTTC
AAGTTCATCAACTCTTCAATCTTCAAAATTATGCATGCACCCTTCACGAC
CGATCAATTCAAATCTCACGTTCTGTTTAACCAAGAAGTCTAAACCCGCA
TCTGCAATCTCCAAAGCCTCATATGTTACAACATCAAAGACAAACGGGAA
TCAACAACAACGCGGCGGTTCACTGAATAGAACATCATCCAATTCATGAT
AAGCAGATTGCTAACCTGACGTTAAGATGAATGGTCATATTATCATTTTT
AGATCGCAGTCAGACGAGATGATCACATCAGAGATACGAGACGTTTTGAT
AAGCATCTTAAAATTATTTGATCATGTCATTTATGGCACTTGTAATTATT
GTATATTTTAAACCCGTTCTTTTGTTGTACTGAGTGTTCGATGGATTTTT
TTGTATATAATAATGTAAAGACAATTTGTAtagtttttggttgttttttt
cctgataaaAAGAATCTTCATAATcttat Run BLAST on NCBI transcript from alignment at scaffold_141:329961..331063+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048170 ID=TCONS_00048170|Name=TCONS_00048170|organism=Clytia hemisphaerica|type=transcript|length=1103bp|location=Sequence derived from alignment at scaffold_141:329961..331063+ (Clytia hemisphaerica)
TTCAGAGGCTAAGACTAGCAATGTGATTGGTTATCACCTAGGAAACATTG
CGTTATCTTGAAACACAAAGAGAGAGAGTGATGGTATAAATAAGCGTACA
TCTTGTGTACATCAAGCACAAGTACAACGATAAAAGTAAAGAAGAACACG
CATAAAGGTTAGTACAAATTCCTACAATGTTTTTCTCGTTGTTTCTCTGT
TATATTGCACCTTTTAAGTTCATCTGTCATTTCAACGAAGATTTCCAAAA
ATCGCTTACCCCCCTCCCCCTCCTCTCTCTTTTATTCATTCTGAGTACAT
ATTTGATCAGTTTCCACGCCACAAGGGGGGGGGGAGCATGTccaaaaact
tttggttgtgccTCCTTAGGCTCCATATTCATTGCCCCctccactttcaa
tttcatggtGTGGTCTCTGTTGGTTGACTAACTGAAGCAGAGGTTTGAGA
GCATATAAGTCTGgttgaattctttttttttttttggaaaaagttttcaa
gttaAGTAACAATACCCTTATATTTTTTTAGGTTGATTCTGTACAAACGC
CTCAGAGGAGCCTCGTCCATTAACCATTGAAGTAAATTTCAAGTCCACTA
CAAACATAAAATGCAGCCATCTTCAAGTTCATCAACTCTTCAATCTTCAA
AATTATGCATGCACCCTTCACGACCGATCAATTCAAATCTCACGTTCTGT
TTAACCAAGAAGTCTAAACCCGCATCTGCAATCTCCAAAGCCTCATATGT
TACAACATCAAAGACAAACGGGAATCAACAACAACGCGGCGGTTCACTGA
ATAGAACATCATCCAATTCATGATAAGCAGATTGCTAACCTGACGTTAAG
ATGAATGGTCATATTATCATTTTTAGATCGCAGTCAGACGAGATGATCAC
ATCAGAGATACGAGACGTTTTGATAAGCATCTTAAAATTATTTGATCATG
TCATTTATGGCACTTGTAATTATTGTATATTTTAAACCCGTTCTTTTGTT
GTACTGAGTGTTCGATGGATTTTTTTGTATATAATAATGTAAAGACAATT
TGTAtagtttttggttgtttttttcctgataaaAAGAATCTTCATAATct
tat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048170-exon-scaffold_141-1491911889:329961..330117 | TCONS_00048170-exon-scaffold_141-1491911889:329961..330117 | Clytia hemisphaerica | exon |
| TCONS_00048170-exon-scaffold_141-1510915933:329961..330117 | TCONS_00048170-exon-scaffold_141-1510915933:329961..330117 | Clytia hemisphaerica | exon |
| TCONS_00048170-exon-scaffold_141-1575043694:329961..330117 | TCONS_00048170-exon-scaffold_141-1575043694:329961..330117 | Clytia hemisphaerica | exon |
| TCONS_00048170-exon-scaffold_141-1491911889:330492..331063 | TCONS_00048170-exon-scaffold_141-1491911889:330492..331063 | Clytia hemisphaerica | exon |
| TCONS_00048170-exon-scaffold_141-1510915933:330492..331063 | TCONS_00048170-exon-scaffold_141-1510915933:330492..331063 | Clytia hemisphaerica | exon |
| TCONS_00048170-exon-scaffold_141-1575043694:330492..331063 | TCONS_00048170-exon-scaffold_141-1575043694:330492..331063 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:329961..331063 + |
Blast
The following BLAST results are available for this feature:
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