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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048250 ID=TCONS_00048250|Name=TCONS_00048250|organism=Clytia hemisphaerica|type=transcript|length=1516bp
TTTTCGAATGAAAATAGTATTATTCCAAATTGCTAATTTTTGATTtaata
aatagaaaaataaaatgatacaATAAACAACGTGCAATAAATAATATCTG
ATTCCCCCCAAAAAAAGGTCCCAAACATGCATATAAAAGGAATGGTCGGT
TTGCAGTCCCggataattcatgatatgcaccattacaatgtctcCGGAGA
TTACATCACGGAGCTAACAGCTCATCATTGGTTGTAATTTGACGTAAAAT
CAGACAATACGTCaattacaaccaatcagctgttgagtccgtggaagaca
tcgcaatggtgcatatcatgaatacaaaaAGGTCTCTAGAGTTTTCCTAC
TGTGAGATTCTTGAAATGGCTACGTAATGCGAACCATCAGAAAAATTGCT
GATTAAGAATTCTGCGGGATAAACTTTAAATTATTTCGAATCATTTCAAA
TTCAGCCTTCGGGGAAAGTATTTCAGCTAAAGAAGTCTCAGgaaaaatca
aacgatgctatactccaaataataataatggatcaacaaataaataaaaa
ataaaaacttgatGACTGAACATAATAAATACTACGATATATCTAAGATT
GTGCATATCGACTCCCTTGCGTCAATTTCATATGTACAAACAACGACGCC
CTCtaatttaattttcaagatgaaTTGGATTTCTATCAAATAGGAGCGTA
TTGAATGGTAGAGCGATGTTCATGAGAGTTTTTTGCCCTTATTTAAAGAC
AATTAACTTTTGTAACACAAAAGACCCGTGCCGGGACTGGCTCCGGTAAT
AGTATATACTATAAAAAATTAAGGGTTGTCCTCTAATTTAATTGGATTTT
TATCAAATAGGAGCGTATTGAATGGTAGTTAttggtgactttcaatatta
tcgaataatggagcatatcgaatagaacgtcgaattagagagcgtttaTA
GGGATTAGTCCTGAATACAAGAAGATGGAAATACCGAAAAGCTTGTTGAG
AACTTTGAGCTATTAAAAAATATCGATTTATTATTTATGATTTTCGTATT
CCACATAATTATCCATTTTGAATTATCTTTTCGAAGAGGTATACTCTACA
ACTCCAAACCAGTAAATCTGCTGCTATATGAATAAGTATGGTCGAGCATA
AAGTTCGAGGAGAAATCTCTAATGAGGATACTATAAGATCGTACACAAGA
TCGAATCGAGGGACGCGAGAATGGCGCCATTGATCACCAACTTTGCCGCC
CTTTTCCTTATTCACATAAAAAAGAGCaatgttttaagaaaaaacgAGTA
AAGTATCCAAACATTCCTTGCTCGCCAACACGCTTGCTTAGATCTTAGAA
AGGCTacaaaattataaaatcaatgcaaaaataaaatctaaatattaAAT
AATCAGAAAGAAAGCTCCTGTCTAAATGCTATGTAATCCAAATAATTTTA
CATATGTTACAAAAacgtgaagaaaattttatgaaaaaaaacttagaaaa
aggAAGACTGCGTCGG Run BLAST on NCBI transcript from alignment at scaffold_141:359814..361329 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048250 ID=TCONS_00048250|Name=TCONS_00048250|organism=Clytia hemisphaerica|type=transcript|length=1516bp|location=Sequence derived from alignment at scaffold_141:359814..361329 (Clytia hemisphaerica)
CCGACGCAGTCTTcctttttctaagttttttttcataaaattttcttcac
gtTTTTGTAACATATGTAAAATTATTTGGATTACATAGCATTTAGACAGG
AGCTTTCTTTCTGATTATTtaatatttagattttatttttgcattgattt
tataattttgtAGCCTTTCTAAGATCTAAGCAAGCGTGTTGGCGAGCAAG
GAATGTTTGGATACTTTACTcgttttttcttaaaacattGCTCTTTTTTA
TGTGAATAAGGAAAAGGGCGGCAAAGTTGGTGATCAATGGCGCCATTCTC
GCGTCCCTCGATTCGATCTTGTGTACGATCTTATAGTATCCTCATTAGAG
ATTTCTCCTCGAACTTTATGCTCGACCATACTTATTCATATAGCAGCAGA
TTTACTGGTTTGGAGTTGTAGAGTATACCTCTTCGAAAAGATAATTCAAA
ATGGATAATTATGTGGAATACGAAAATCATAAATAATAAATCGATATTTT
TTAATAGCTCAAAGTTCTCAACAAGCTTTTCGGTATTTCCATCTTCTTGT
ATTCAGGACTAATCCCTAtaaacgctctctaattcgacgttctattcgat
atgctccattattcgataatattgaaagtcaccaaTAACTACCATTCAAT
ACGCTCCTATTTGATAAAAATCCAATTAAATTAGAGGACAACCCTTAATT
TTTTATAGTATATACTATTACCGGAGCCAGTCCCGGCACGGGTCTTTTGT
GTTACAAAAGTTAATTGTCTTTAAATAAGGGCAAAAAACTCTCATGAACA
TCGCTCTACCATTCAATACGCTCCTATTTGATAGAAATCCAAttcatctt
gaaaattaaattaGAGGGCGTCGTTGTTTGTACATATGAAATTGACGCAA
GGGAGTCGATATGCACAATCTTAGATATATCGTAGTATTTATTATGTTCA
GTCatcaagtttttattttttatttatttgttgatccattattattattt
ggagtatagcatcgtttgatttttcCTGAGACTTCTTTAGCTGAAATACT
TTCCCCGAAGGCTGAATTTGAAATGATTCGAAATAATTTAAAGTTTATCC
CGCAGAATTCTTAATCAGCAATTTTTCTGATGGTTCGCATTACGTAGCCA
TTTCAAGAATCTCACAGTAGGAAAACTCTAGAGACCTttttgtattcatg
atatgcaccattgcgatgtcttccacggactcaacagctgattggttgta
attGACGTATTGTCTGATTTTACGTCAAATTACAACCAATGATGAGCTGT
TAGCTCCGTGATGTAATCTCCGgagacattgtaatggtgcatatcatgaa
ttatccGGGACTGCAAACCGACCATTCCTTTTATATGCATGTTTGGGACC
TTTTTTTGGGGGGAATCAGATATTATTTATTGCACGTTGTTTATtgtatc
attttatttttctatttattaAATCAAAAATTAGCAATTTGGAATAATAC
TATTTTCATTCGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048250-exon-scaffold_141-1491911889:359814..361329 | TCONS_00048250-exon-scaffold_141-1491911889:359814..361329 | Clytia hemisphaerica | exon |
| TCONS_00048250-exon-scaffold_141-1510915933:359814..361329 | TCONS_00048250-exon-scaffold_141-1510915933:359814..361329 | Clytia hemisphaerica | exon |
| TCONS_00048250-exon-scaffold_141-1575043694:359814..361329 | TCONS_00048250-exon-scaffold_141-1575043694:359814..361329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:359814..361329 . |
Blast
The following BLAST results are available for this feature:
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