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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048173 ID=TCONS_00048173|Name=TCONS_00048173|organism=Clytia hemisphaerica|type=transcript|length=1299bp
gGGAGATATGCCCAACTCTGTGGTATGGTTGCTATTACTTGTCAGGCTCA
ACCATGCGGGGATACACTGTCCTCCATGTCACTCTCATTGAACAACATAT
TTTTTTGCTACCTTACAGTTAATGGAATAAAATGATTAGCCAACAGTAGA
AAATCAATATATTAACTTAAAAATGTATCGTTTGGTTTTAAATTGTtgga
gaaaaaacaaacctttgtTTCTTTGTGGTTTATTTTCTGTTGCTTTCTTT
ATCTTTTACTCCTTGAATGTGCAAGGNACCTTTGTTTCTTTGTGGTTTAT
TTTCTGTTGCTTTCTTTATCTTTTACACCTTGAATGTGCAAGGATGGCAT
TGGTACAAGATGGCAAAACAAGAGGTTTGTGAGACTCCTGATAACTACAT
GAATGAACTCAAGTCTTTATTTCGTGATGCTCATGTTATCTTAACTAAAT
TTGGTTTGACACATGTTTTGATATATGGCAGTTTATTTGGTGCAATGCGC
TTTGGTGGTCCTCTTCCTTGGGACAATGACTTTGATCTAGCAATATTGTC
CGAAGAAGTTGCCCAAATTGATGAATCAAAATTTCTCCAAGAGTTCTATG
ATCGAGGAATAAAAGTGATGTATAGGCATTGGAAAGGAGAGTATGTGATT
TCAAGAAATAAAGCACACGGTGATTTGATGATATTTTCTGAGACATGGTT
CGGTGATCGAGGAAGGACTGGAATTGAACCATGGGTGTTTTTCATACACT
TTCGTAATTTTCATCAGGCGCCAGCAAGATTGTTTGAGAAGCCGTTACCA
AAATTACCTTTTTTAGGAATGAATATTTCTGTACCTCGTGAGGGAATGGA
AATTCAAAGGCATTTCTATCCCAATGATTGGTGGAAGGAAGTAAAGCCAA
AAGGCTGCTAAAGTGTTTTTGTCTTTAAATTTATAAAATagtatattttg
ataattttaagttcCAAACGTTGTCAAGATCTATTTGTTGCTAAATAGAA
ACTTCTTTAGGTTCCGGataaaattactttaaaaattttagaaaaatctt
ttcatcCATTTTTCATACAACCCTCACTATCGGGTCATTATTGTAGGACA
GTGTTAATAGTGGAAATAAATTATTATTTACATATTAATTATTTAGAATC
TGTCAACAGAATTCTATAGaaataattatatttttgaattttttatcaat
ataagTAAGTATTAGGGTGTTGGTTTGTTTCACCAAAGACAGTGCTAGTG
TAAAGGAGCAATATAATAATGATgagtcaaaactttttttaaatgtaga Run BLAST on NCBI protein sequence of TCONS_00048173-protein >TCONS_00048173-protein ID=TCONS_00048173-protein|Name=TCONS_00048173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MCKXPLFLCGLFSVAFFIFYTLNVQGWHWYKMAKQEVCETPDNYMNELKS
LFRDAHVILTKFGLTHVLIYGSLFGAMRFGGPLPWDNDFDLAILSEEVAQ
IDESKFLQEFYDRGIKVMYRHWKGEYVISRNKAHGDLMIFSETWFGDRGR
TGIEPWVFFIHFRNFHQAPARLFEKPLPKLPFLGMNISVPREGMEIQRHF
YPNDWWKEVKPKGC Run BLAST on NCBI transcript from alignment at scaffold_141:368525..370025+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048173 ID=TCONS_00048173|Name=TCONS_00048173|organism=Clytia hemisphaerica|type=transcript|length=1501bp|location=Sequence derived from alignment at scaffold_141:368525..370025+ (Clytia hemisphaerica)
gGGAGATATGCCCAACTCTGTGGTATGGTTGCTATTACTTGTCAGGCTCA
ACCATGCGGGGATACACTGTCCTCCATGTCACTCTCATTGAACAACATAT
TTTTTTGCTACCTTACAGTTAATGGAATAAAATGATTAGCCAACAGTAGA
AAATCAATATATTAACTTAAAAATGTATCGTTTGGTTTTAAATTGTtgga
gaaaaaacaaacctttgtTTCTTTGTGGTTTATTTTCTGTTGCTTTCTTT
ATCTTTTACTCCTTGAATGTGCAAGGNACCTTTGTTTCTTTGTGGTTTAT
TTTCTGTTGCTTTCTTTATCTTTTACACCTTGAATGTGCAAGGATGGCAT
TGGTACAAGATGGCAAAACAAGAGGTTTGTGAGACTCCTGATAACTACAT
GAATGAACTCAAGTCTTTATTTCGTGATGCTCATGTTATCTTAACTAAAT
TTGGTTTGACACATGTTTTGATATATGGCAGGTAAGTTTAACATTTCCTT
GATTGCAGTTTTGGAATTatacctttttaaaaaatttttttgattttgaa
gaatcattccttttgaaataaaaaaacatcttGGTTTAATGTCTTAGTTT
TGATATTTCTCACCTTTTCCATGAAAGAGTTTCACTGTTCAAACTATTTT
ATACTCTTTAGCACAAGTTTCTTATTTTAACAGTTTATTTGGTGCAATGC
GCTTTGGTGGTCCTCTTCCTTGGGACAATGACTTTGATCTAGCAATATTG
TCCGAAGAAGTTGCCCAAATTGATGAATCAAAATTTCTCCAAGAGTTCTA
TGATCGAGGAATAAAAGTGATGTATAGGCATTGGAAAGGAGAGTATGTGA
TTTCAAGAAATAAAGCACACGGTGATTTGATGATATTTTCTGAGACATGG
TTCGGTGATCGAGGAAGGACTGGAATTGAACCATGGGTGTTTTTCATACA
CTTTCGTAATTTTCATCAGGCGCCAGCAAGATTGTTTGAGAAGCCGTTAC
CAAAATTACCTTTTTTAGGAATGAATATTTCTGTACCTCGTGAGGGAATG
GAAATTCAAAGGCATTTCTATCCCAATGATTGGTGGAAGGAAGTAAAGCC
AAAAGGCTGCTAAAGTGTTTTTGTCTTTAAATTTATAAAATagtatattt
tgataattttaagttcCAAACGTTGTCAAGATCTATTTGTTGCTAAATAG
AAACTTCTTTAGGTTCCGGataaaattactttaaaaattttagaaaaatc
ttttcatcCATTTTTCATACAACCCTCACTATCGGGTCATTATTGTAGGA
CAGTGTTAATAGTGGAAATAAATTATTATTTACATATTAATTATTTAGAA
TCTGTCAACAGAATTCTATAGaaataattatatttttgaattttttatca
atataagTAAGTATTAGGGTGTTGGTTTGTTTCACCAAAGACAGTGCTAG
TGTAAAGGAGCAATATAATAATGATgagtcaaaactttttttaaatgtag
a Coding sequence (CDS) from alignment at scaffold_141:368525..370025+ >TCONS_00048173 ID=TCONS_00048173|Name=TCONS_00048173|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at scaffold_141:368525..370025+ (Clytia hemisphaerica)
ATGTGCAAGGNACCTTTGTTTCTTTGTGGTTTATTTTCTGTTGCTTTCTT
TATCTTTTACACCTTGAATGTGCAAGGATGGCATTGGTACAAGATGGCAA
AACAAGAGGTTTGTGAGACTCCTGATAACTACATGAATGAACTCAAGTCT
TTATTTCGTGATGCTCATGTTATCTTAACTAAATTTGGTTTGACACATGT
TTTGATATATGGCAGTTTATTTGGTGCAATGCGCTTTGGTGGTCCTCTTC
CTTGGGACAATGACTTTGATCTAGCAATATTGTCCGAAGAAGTTGCCCAA
ATTGATGAATCAAAATTTCTCCAAGAGTTCTATGATCGAGGAATAAAAGT
GATGTATAGGCATTGGAAAGGAGAGTATGTGATTTCAAGAAATAAAGCAC
ACGGTGATTTGATGATATTTTCTGAGACATGGTTCGGTGATCGAGGAAGG
ACTGGAATTGAACCATGGGTGTTTTTCATACACTTTCGTAATTTTCATCA
GGCGCCAGCAAGATTGTTTGAGAAGCCGTTACCAAAATTACCTTTTTTAG
GAATGAATATTTCTGTACCTCGTGAGGGAATGGAAATTCAAAGGCATTTC
TATCCCAATGATTGGTGGAAGGAAGTAAAGCCAAAAGGCTGCTAAATGTG
CAAGGNACCTTTGTTTCTTTGTGGTTTATTTTCTGTTGCTTTCTTTATCT
TTTACACCTTGAATGTGCAAGGATGGCATTGGTACAAGATGGCAAAACAA
GAGGTTTGTGAGACTCCTGATAACTACATGAATGAACTCAAGTCTTTATT
TCGTGATGCTCATGTTATCTTAACTAAATTTGGTTTGACACATGTTTTGA
TATATGGCAGTTTATTTGGTGCAATGCGCTTTGGTGGTCCTCTTCCTTGG
GACAATGACTTTGATCTAGCAATATTGTCCGAAGAAGTTGCCCAAATTGA
TGAATCAAAATTTCTCCAAGAGTTCTATGATCGAGGAATAAAAGTGATGT
ATAGGCATTGGAAAGGAGAGTATGTGATTTCAAGAAATAAAGCACACGGT
GATTTGATGATATTTTCTGAGACATGGTTCGGTGATCGAGGAAGGACTGG
AATTGAACCATGGGTGTTTTTCATACACTTTCGTAATTTTCATCAGGCGC
CAGCAAGATTGTTTGAGAAGCCGTTACCAAAATTACCTTTTTTAGGAATG
AATATTTCTGTACCTCGTGAGGGAATGGAAATTCAAAGGCATTTCTATCC
CAATGATTGGTGGAAGGAAGTAAAGCCAAAAGGCTGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048173-exon-scaffold_141-1491911889:368525..369005 | TCONS_00048173-exon-scaffold_141-1491911889:368525..369005 | Clytia hemisphaerica | exon |
| TCONS_00048173-exon-scaffold_141-1510915933:368525..369005 | TCONS_00048173-exon-scaffold_141-1510915933:368525..369005 | Clytia hemisphaerica | exon |
| TCONS_00048173-exon-scaffold_141-1575043694:368525..369005 | TCONS_00048173-exon-scaffold_141-1575043694:368525..369005 | Clytia hemisphaerica | exon |
| TCONS_00048173-exon-scaffold_141-1491911889:369208..370025 | TCONS_00048173-exon-scaffold_141-1491911889:369208..370025 | Clytia hemisphaerica | exon |
| TCONS_00048173-exon-scaffold_141-1510915933:369208..370025 | TCONS_00048173-exon-scaffold_141-1510915933:369208..370025 | Clytia hemisphaerica | exon |
| TCONS_00048173-exon-scaffold_141-1575043694:369208..370025 | TCONS_00048173-exon-scaffold_141-1575043694:369208..370025 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:368525..370025 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR007074 | LicD_fam |
Blast
The following BLAST results are available for this feature:
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