TCONS_00048195 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048195
Unique NameTCONS_00048195
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048195 ID=TCONS_00048195|Name=TCONS_00048195|organism=Clytia hemisphaerica|type=transcript|length=3583bp
GAAATGGTAAAATATTGCACTTTCAGcaaatcaaaatcttaaaatttttc
taTCTTTCTCTATACTAGGCCCCCCCCTCATATCAATTAGGCCCTCTTAA
CCGGGGGCCCTAAGGGTATATTTATCAAGGCATCATCTATGCGTTAAAGA
GGAATATAGGCACGGAGTTCTATTATGTAAAGTGAGGCAGGTGATtcctt
tgtaaaaaaataaacttcCATCAAAACAAATGTAGCACATGTAATAAAAA
CGTATATCGTCCACCTCTAGGCAAAACGCACTGTCGAATAATCAAAATAT
CTCTTCTGTAGCAGCGAGCATAAAGAATTTAATAgttttttgatcaaata
attaTGTAAATGTCACTTCGAACGTTTTGTaattaaagataaaaaacaat
gaaattgataTCCTTAAATAAGatagtaaaacgttcgaaaatgtcATGAA
AAGAGAGAAAAGGCTGAGAAAGACTGAATGTGAAAtagggaaaaattaaa
atgcttTTCTGCTAATTGGTGAACGATAAACCATATATTCAACGTGAAAA
ATCTGATATCATAATATTCAGCCTCGCTTATCTATCCTGATCTATCTGCT
TAATACAATTCAGGAATAATTAATATCCAAttaaatttaaaggttttgtt
tttaaataagagtgatatcgtttgcttactcatcaattttaattcacaag
cttttccaCATTGAATTGGCGGATGTGGAACaatattggtcagaaagagc
AAAAGATAacaaatataacaataggcagacacagtcctgatatgaaatat
gtgtctgataagAAACGAGGACACTTATGTAAAGATAAAACCTTCAAAAC
CCTAAGAAAGCATAGGTTATATAATATTAAAAGAtgtacaaaaaagtaat
aaaaatataattactaagattttgaaaaagaaaatctaatAATTTGTAGC
AAGAAGCTTTAAAAAGATCTTAATTTaaggggcacttaggcaaaacaggc
gacgggtatgtgcgagccataaggcaACCCTTCGCTGAAAGTGTTTCTAT
TTTAGGCTTTGTCTGTCAccttgcaaacctagtaccccctcccctggacc
ttaaattttaaatgtcttctttataaaagacaaaaatgaaatttcataaC
CAGTAGAGATTTTTTCTTGTATATTTAAGAAGTCTGCTCAAGCAAGATTT
TCACAACATCATCTGTAAACTATCATAGTTCATTAGTAgtgctaccttaa
gggaagaaattttcgcgggaatttaatttcgcggctggtcaaaatatttt
ttttcgcaggaatttaatttcgcggttcatcgatgttgcaggatattttt
ggccaaaagcgttactaactaagcaaaaaacctgctttaaggcttgaaat
agtacgaatttgggggaatgcgtgaaataaattaaatttcgcgggatttt
aatttcgcggtttgacgattttgtaaaatttcgcgggaacttaattttgc
ggttttaggcaaaatccgcgaaaaccgcaaaattttgttcccgcgaaaat
ttctttccttaaggtaattagtttttaaaaattcaaagaaggggcattat
ttaaaaaaactatagAATTAAGAGTGAATAAAAGAGTACTTATCTAATTA
ATTAGATACTTTAGACTTTACAAACTATATCTTGCATCATGGTATCTGTG
TCTCGAGTGCACAGAACCAGCGGTGTCTGGACAGCGCTAAGCGCTCCAAA
TTCgaatatcatatcatatcatatcattaCAAAGTATAATCTAAAAGTTC
TCTAAAGTTATTTAAAATatgcttaaaataataattttgtcGTCTAAAAT
AAGAGCATATAATATGTATACTTTTGTCATAGTTTGAAACTATCAGTTAT
AATCTAACAATAGGAATATATATTTAATAAAGATGTTTAAAATGTTTAGA
AAATAATGACTTAAAAAAAGCAAGCtttaaaaataagatctagagtaata
ttatattttagataaaaaacTAAACTGAATTTCTATTTAATTAACAAATA
ATTTAATCACGTGCCTTAGTGAAATAGCTAGGGATTAAGAGTAAAAGTCa
gacagaattaaaaaaaacaaaatagactGGACATGCTCACACAATGGGgt
tcataattttatttttctaatttactcattaattttttgagactgaattt
tgaatttttttcaatcagctCAAACTTGtatgtagctgatgattgtaagc
aagaaactttaggttctacatttaaaaaaagttttgactcATCATTATTA
TATTGCTCCTTTACACTAGCACTGTCTTTGGTGAAACAAACCAACACCCT
AATACTTActtatattgataaaaaattcaaaaatataattatttCTATAG
AATTCTGTTGACAGATTCTAAATAATTAATATGTAAATAATAATTTATTT
CCACTATTAACACTGTCCTACAATAATGACCCGATAGTGAGGGTTGTATG
AAAAATGgatgaaaagatttttctaaaatttttaaagtaattttatCCGG
AACCTAAAGAAGTTTCTATTTAGCAACAAATAGATCTTGACAACGTTTGg
aacttaaaattatcaaaatatactATTTTATAAATTTAAAGACAAAAACA
CTTTAGCAGCCTTTTGGCTTTACTTCCTTCCACCAATCATTGGGATAGAA
ATGCCTTTGAATTTCCATTCCCTCACGAGGTACAGAAATATTCATTCCTA
AAAAAGGTAATTTTGGTAACGGCTTCTCAAACAATCTTGCTGGCGCCTGA
TGAAAATTACGAAAGTGTATGAAAAACACCCATGGTTCAATTCCAGTCCT
TCCTCGATCACCGAACCATGTCTCAGAAAATATCATCAAATCACCGTGTG
CTTTATTTCTTGAAATCACATACTCTCCTTTCCAATGCCTATACATCACT
TTTATTCCTCGATCATAGAACTCTTGGAGAAATTTTGATTCATCAATTTG
GGCAACTTCTTCGGACAATATTGCTAGATCAAAGTCATTGTCCCAAGGAA
GAGGACCACCAAAGCGCATTGCACCAAATAAACTGTTAAAATAAGAAACT
TGTGCTAAAGAGTATAAAATAGTTTGAACAGTGAAACTCTTTCATGGAAA
AGGTGAGAAATATCAAAACTAAGACATTAAACCaagatgtttttttattt
caaaaggaatgattcttcaaaatcaaaaaaattttttaaaaaggtatAAT
TCCAAAACTGCAATCAAGGAAATGTTAAACTTACCTGCCATATATCAAAA
CATGTGTCAAACCAAATTTAGTTAAGATAACATGAGCATCACGAAATAAA
GACTTGAGTTCATTCATGTAGTTATCAGGAGTCTCACAAACCTCTTGTTT
TGCCATCTTGTACCAATGCCATCCTTGCACATTCAAGGTGTAAAAGATAA
AGAAAGCAACAGAAAATAAACCACAAAGAAACAAAGgtttgttttttctc
caACAATTTAAAACCAAACGATACATTTTTAAGTTAATATATTGATTTTC
TACTGTTGGCTAATCATTTTATTCCATTAACTG
Run BLAST on NCBI

transcript from alignment at scaffold_141:368640..372289-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048195 ID=TCONS_00048195|Name=TCONS_00048195|organism=Clytia hemisphaerica|type=transcript|length=3650bp|location=Sequence derived from alignment at scaffold_141:368640..372289- (Clytia hemisphaerica)
GAAATGGTAAAATATTGCACTTTCAGCAAATCAAAATCTTAAAATTTTTC
TATCTTTCTCTATACTAGGCCCCCCCCTCATATCAATTAGGCCCTCTTAA
CCGGGGGCCCTAAGGGTATATTTATCAAGGCATCATCTATGCGTTAAAGA
GGAATATAGGCACGGAGTTCTATTATGTAAAGTGAGGCAGGTGATTCCTT
TGTAAAAAAATAAACTTCCATCAAAACAAATGTAGCACATGTAATAAAAA
CGTATATCGTCCACCTCTAGGCAAAACGCACTGTCGAATAATCAAAATAT
CTCTTCTGTAGCAGCGAGCATAAAGAATTTAATAGTTTTTTGATCAAATA
ATTATGTAAATGTCACTTCGAACGTTTTGTAATTAAAGATAAAAAACAAT
GAAATTGATATCCTTAAATAAGATAGTAAAACGTTCGAAAATGTCATGAA
AAGAGAGAAAAGGCTGAGAAAGACTGAATGTGAAATAGGGAAAAATTAAA
ATGCTTTTCTGCTAATTGGTGAACGATAAACCATATATTCAACGTGAAAA
ATCTGATATCATAATATTCAGCCTCGCTTATCTATCCTGATCTATCTGCT
TAATACAATTCAGGAATAATTAATATCCAATTAAATTTAAAGGTTTTGTT
TTTAAATAAGAGTGATATCGTTTGCTTACTCATCAATTTTAATTCACAAG
CTTTTCCACATTGAATTGGCGGATGTGGAACAATATTGGTCAGAAAGAGC
AAAAGATAACAAATATAACAATAGGCAGACACAGTCCTGATATGAAATAT
GTGTCTGATAAGAAACGAGGACACTTATGTAAAGATAAAACCTTCAAAAC
CCTAAGAAAGCATAGGTTATATAATATTAAAAGATGTACAAAAAAGTAAT
AAAAATATAATTACTAAGATTTTGAAAAAGAAAATCTAATAATTTGTAGC
AAGAAGCTTTAAAAAGATCTTAATTTAAGGGGCACTTAGGCAAAACAGGC
GACGGGTATGTGCGAGCCATAAGGCAACCCTTCGCTGAAAGTGTTTCTAT
TTTAGGCTTTGTCTGTCACCTTGCAAACCTAGTACCCCCTCCCCTGGACC
TTAAATTTTAAATGTCTTCTTTATAAAAGACAAAAATGAAATTTCATAAC
CAGTAGAGATTTTTTCTTGTATATTTAAGAAGTCTGCTCAAGCAAGATTT
TCACAACATCATCTGTAAACTATCATAGTTCATTAGTAGTGCTACCTTAA
GGGAAGAAATTTTCGCGGGAATTTAATTTCGCGGCTGGTCAAAATATTTT
TTTTCGCAGGAATTTAATTTCGCGGTTCATCGATGTTGCAGGATATTTTT
GGCCAAAAGCGTTACTAACTAAGCAAAAAACCTGCTTTAAGGCTTGAAAT
AGTACGAATTTGGGGGAATGCGTGAAATAAATTAAATTTCGCGGGATTTT
AATTTCGCGGTTTGACGATTTTGTAAAATTTCGCGGGAACTTAATTTTGC
GGTTTTAGGCAAAATCCGCGAAAACCGCAAAATTTTGTTCCCGCGAAAAT
TTCTTTCCTTAAGGTAATTAGTTTTTAAAAATTCAAAGAAGGGGCATTAT
TTAAAAAAACTATAGAATTAAGAGTGAATAAAAGAGTACTTATCTAATTA
ATTAGATACTTTAGACTTTACAAACTATATCTTGCATCATGGTATCTGTG
TCTCGAGTGCACAGAACCAGCGGTGTCTGGACAGCGCTAAGCGCTCCAAA
TTCGAATATCATATCATATCATATCATTACAAAGTATAATCTAAAAGTTC
TCTAAAGTTATTTAAAATATGCTTAAAATAATAATTTTGTCGTCTAAAAT
AAGAGCATATAATATGTATACTTTTGTCATAGTTTGAAACTATCAGTTAT
AATCTAACAATAGGAATATATATTTAATAAAGATGTTTAAAATGTTTAGA
AAATAATGACTTAAAAAAAGCAAGCTTTAAAAATAAGATCTAGAGTAATA
TTATATTTTAGATAAAAAACTAAACTGAATTTCTATTTAATTAACAAATA
ATTTAATCACGTGCCTTAGTGAAATAGCTAGGGATTAAGAGTAAAAGTCA
GACAGAATTAAAAAAAACAAAATAGACTGGACATGCTCACACAATGGGGT
TCATAATTTTATTTTTCTAATTTACTCATTAATTTTTTGAGACTGAATTT
TGAATTTTTTTCAATCAGCTCAAACTTGTATGTAGCTGATGATTGTAAGC
AAGAAACTTTAGGTTCTACATTTAAAAAAAGTTTTGACTCATCATTATTA
TATTGCTCCTTTACACTAGCACTGTCTTTGGTGAAACAAACCAACACCCT
AATACTTACTTATATTGATAAAAAATTCAAAAATATAATTATTTCTATAG
AATTCTGTTGACAGATTCTAAATAATTAATATGTAAATAATAATTTATTT
CCACTATTAACACTGTCCTACAATAATGACCCGATAGTGAGGGTTGTATG
AAAAATGGATGAAAAGATTTTTCTAAAATTTTTAAAGTAATTTTATCCGG
AACCTAAAGAAGTTTCTATTTAGCAACAAATAGATCTTGACAACGTTTGG
AACTTAAAATTATCAAAATATACTATTTTATAAATTTAAAGACAAAAACA
CTTTAGCAGCCTTTTGGCTTTACTTCCTTCCACCAATCATTGGGATAGAA
ATGCCTTTGAATTTCCATTCCCTCACGAGGTACAGAAATATTCATTCCTA
AAAAAGGTAATTTTGGTAACGGCTTCTCAAACAATCTTGCTGGCGCCTGA
TGAAAATTACGAAAGTGTATGAAAAACACCCATGGTTCAATTCCAGTCCT
TCCTCGATCACCGAACCATGTCTCAGAAAATATCATCAAATCACCGTGTG
CTTTATTTCTTGAAATCACATACTCTCCTTTCCAATGCCTATACATCACT
TTTATTCCTCGATCATAGAACTCTTGGAGAAATTTTGATTCATCAATTTG
GGCAACTTCTTCGGACAATATTGCTAGATCAAAGTCATTGTCCCAAGGAA
GAGGACCACCAAAGCGCATTGCACCAAATAAACTGTTAAAATAAGAAACT
TGTGCTAAAGAGTATAAAATAGTTTGAACAGTGAAACTCTTTCATGGAAA
AGGTGAGAAATATCAAAACTAAGACATTAAACCAAGATGTTTTTTTATTT
CAAAAGGAATGATTCTTCAAAATCAAAAAAATTTTTTAAAAAGGTATAAT
TCCAAAACTGCAATCAAGGAAATGTTAAACTTACCTGCCATATATCAAAA
CATGTGTCAAACCAAATTTAGTTAAGATAACATGAGCATCACGAAATAAA
GACTTGAGTTCATTCATGTAGTTATCAGGAGTCTCACAAACCTCTTGTTT
TGCCATCTTGTACCAATGCCATCCTTGCACATTCAAGGTGTAAAAGATAA
AGAAAGCAACAGAAAATAAACCACAAAGAAACAAAGGTNCCTTGCACATT
CAAGGAGTAAAAGATAAAGAAAGCAACAGAAAATAAACCACAAAGAAACA
AAGGTTTGTTTTTTCTCCAACAATTTAAAACCAAACGATACATTTTTAAG
TTAATATATTGATTTTCTACTGTTGGCTAATCATTTTATTCCATTAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030676XLOC_030676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048195-exon-scaffold_141-1575043694:368804..372289TCONS_00048195-exon-scaffold_141-1575043694:368804..372289Clytia hemisphaericaexon
TCONS_00048195-exon-scaffold_141-1575043694:368640..368736TCONS_00048195-exon-scaffold_141-1575043694:368640..368736Clytia hemisphaericaexon
TCONS_00048195-exon-scaffold_141-1510915933:368804..372289TCONS_00048195-exon-scaffold_141-1510915933:368804..372289Clytia hemisphaericaexon
TCONS_00048195-exon-scaffold_141-1510915933:368640..368736TCONS_00048195-exon-scaffold_141-1510915933:368640..368736Clytia hemisphaericaexon
TCONS_00048195-exon-scaffold_141-1491911889:368804..372289TCONS_00048195-exon-scaffold_141-1491911889:368804..372289Clytia hemisphaericaexon
TCONS_00048195-exon-scaffold_141-1491911889:368640..368736TCONS_00048195-exon-scaffold_141-1491911889:368640..368736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:368640..372289 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00628	0.0014732	0.505005	2.93663e-08	0.00128384	8.34534e-06	8.60248e-05	3.31052	0	0	7.38455e-08	1.23631e-06	0	0	1.07542e-06	2.10646e-08	0	0	2.65291e-07	1.80372e-07	0.861239	0.202182	1.80667	0.0661993	1.84829e-10	3.87629e-05	0.000583246	0.00118262	4.17208	0.0100033
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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