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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048174 ID=TCONS_00048174|Name=TCONS_00048174|organism=Clytia hemisphaerica|type=transcript|length=1076bp
AGTTAATGGAATAAAATGATTAGCCAACAGTAGAAAATCAATATATTAAC
TTAAAAATGTATCGTTTGGTTTTAAATTGTtggagaaaaaacaaaccttt
gtTTCTTTGTGGTTTATTTTCTGTTGCTTTCTTTATCTTTTACTCCTTGA
ATGTGCAAGGNACCTTTGTTTCTTTGTGGTTTATTTTCTGTTGCTTTCTT
TATCTTTTACACCTTGAATGTGCAAGGATGGCATTGGTACAAGATGGCAA
AACAAGAGTTTATTTGGTGCAATGCGCTTTGGTGGTCCTCTTCCTTGGGA
CAATGACTTTGATCTAGCAATATTGTCCGAAGAAGTTGCCCAAATTGATG
AATCAAAATTTCTCCAAGAGTTCTATGATCGAGGAATAAAAGTGATGTAT
AGGCATTGGAAAGGAGAGTATGTGATTTCAAGAAATAAAGCACACGGTGA
TTTGATGATATTTTCTGAGACATGGTTCGGTGATCGAGGAAGGACTGGAA
TTGAACCATGGGTGTTTTTCATACACTTTCGTAATTTTCATCAGGCGCCA
GCAAGATTGTTTGAGAAGCCGTTACCAAAATTACCTTTTTTAGGAATGAA
TATTTCTGTACCTCGTGAGGGAATGGAAATTCAAAGGCATTTCTATCCCA
ATGATTGGTGGAAGGAAGTAAAGCCAAAAGGCTGCTAAAGTGTTTTTGTC
TTTAAATTTATAAAATagtatattttgataattttaagttcCAAACGTTG
TCAAGATCTATTTGTTGCTAAATAGAAACTTCTTTAGGTTCCGGataaaa
ttactttaaaaattttagaaaaatcttttcatcCATTTTTCATACAACCC
TCACTATCGGGTCATTATTGTAGGACAGTGTTAATAGTGGAAATAAATTA
TTATTTACATATTAATTATTTAGAATCTGTCAACAGAATTCTATAGaaat
aattatatttttgaattttttatcaatataagTAAGTATTAGGGTGTTGG
TTTGTTTCACCAAAGACAGTGCTAGTGTAAAGGAGCAATATAATAATGAT
gagtcaaaactttttttaaatgtaga Run BLAST on NCBI transcript from alignment at scaffold_141:368641..370025+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048174 ID=TCONS_00048174|Name=TCONS_00048174|organism=Clytia hemisphaerica|type=transcript|length=1385bp|location=Sequence derived from alignment at scaffold_141:368641..370025+ (Clytia hemisphaerica)
AGTTAATGGAATAAAATGATTAGCCAACAGTAGAAAATCAATATATTAAC
TTAAAAATGTATCGTTTGGTTTTAAATTGTtggagaaaaaacaaaccttt
gtTTCTTTGTGGTTTATTTTCTGTTGCTTTCTTTATCTTTTACTCCTTGA
ATGTGCAAGGNACCTTTGTTTCTTTGTGGTTTATTTTCTGTTGCTTTCTT
TATCTTTTACACCTTGAATGTGCAAGGATGGCATTGGTACAAGATGGCAA
AACAAGAGGTTTGTGAGACTCCTGATAACTACATGAATGAACTCAAGTCT
TTATTTCGTGATGCTCATGTTATCTTAACTAAATTTGGTTTGACACATGT
TTTGATATATGGCAGGTAAGTTTAACATTTCCTTGATTGCAGTTTTGGAA
TTatacctttttaaaaaatttttttgattttgaagaatcattccttttga
aataaaaaaacatcttGGTTTAATGTCTTAGTTTTGATATTTCTCACCTT
TTCCATGAAAGAGTTTCACTGTTCAAACTATTTTATACTCTTTAGCACAA
GTTTCTTATTTTAACAGTTTATTTGGTGCAATGCGCTTTGGTGGTCCTCT
TCCTTGGGACAATGACTTTGATCTAGCAATATTGTCCGAAGAAGTTGCCC
AAATTGATGAATCAAAATTTCTCCAAGAGTTCTATGATCGAGGAATAAAA
GTGATGTATAGGCATTGGAAAGGAGAGTATGTGATTTCAAGAAATAAAGC
ACACGGTGATTTGATGATATTTTCTGAGACATGGTTCGGTGATCGAGGAA
GGACTGGAATTGAACCATGGGTGTTTTTCATACACTTTCGTAATTTTCAT
CAGGCGCCAGCAAGATTGTTTGAGAAGCCGTTACCAAAATTACCTTTTTT
AGGAATGAATATTTCTGTACCTCGTGAGGGAATGGAAATTCAAAGGCATT
TCTATCCCAATGATTGGTGGAAGGAAGTAAAGCCAAAAGGCTGCTAAAGT
GTTTTTGTCTTTAAATTTATAAAATagtatattttgataattttaagttc
CAAACGTTGTCAAGATCTATTTGTTGCTAAATAGAAACTTCTTTAGGTTC
CGGataaaattactttaaaaattttagaaaaatcttttcatcCATTTTTC
ATACAACCCTCACTATCGGGTCATTATTGTAGGACAGTGTTAATAGTGGA
AATAAATTATTATTTACATATTAATTATTTAGAATCTGTCAACAGAATTC
TATAGaaataattatatttttgaattttttatcaatataagTAAGTATTA
GGGTGTTGGTTTGTTTCACCAAAGACAGTGCTAGTGTAAAGGAGCAATAT
AATAATGATgagtcaaaactttttttaaatgtaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048174-exon-scaffold_141-1491911889:368641..368898 | TCONS_00048174-exon-scaffold_141-1491911889:368641..368898 | Clytia hemisphaerica | exon |
| TCONS_00048174-exon-scaffold_141-1510915933:368641..368898 | TCONS_00048174-exon-scaffold_141-1510915933:368641..368898 | Clytia hemisphaerica | exon |
| TCONS_00048174-exon-scaffold_141-1575043694:368641..368898 | TCONS_00048174-exon-scaffold_141-1575043694:368641..368898 | Clytia hemisphaerica | exon |
| TCONS_00048174-exon-scaffold_141-1491911889:369208..370025 | TCONS_00048174-exon-scaffold_141-1491911889:369208..370025 | Clytia hemisphaerica | exon |
| TCONS_00048174-exon-scaffold_141-1510915933:369208..370025 | TCONS_00048174-exon-scaffold_141-1510915933:369208..370025 | Clytia hemisphaerica | exon |
| TCONS_00048174-exon-scaffold_141-1575043694:369208..370025 | TCONS_00048174-exon-scaffold_141-1575043694:369208..370025 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:368641..370025 + |
Blast
The following BLAST results are available for this feature:
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