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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048251 ID=TCONS_00048251|Name=TCONS_00048251|organism=Clytia hemisphaerica|type=transcript|length=1757bp
GTTTTATTTTGATCAATATATACCAAATCTTTAATAAATTTAAAGGGATC
GAAACGTTACAACATTTAGAACTTTAAAATGTGATAAATGACTTTAAAAG
AAGATATGTTGCACCTTCACAatataaattcaatttttgtatCAAACTAC
AAAATACACCACACGATAAATGACGTCAATCTTGCAACACGATCCTTGTC
ACTTAACCTAAACATGCTACTTCAAGTCACAATTTTCTTTCAACGTTCAT
ATACGTAACAATCCATTAATTAAGGTCAGAACTGTTTTATTCCATAAGAG
TTCTCAAACAAAAACCCAACAATAAAGAAGTCAATATCGTCCCAAGTTTT
GATTACAAGTGATCTATGCATAgaatgaataaatgaatatTTATCACCAA
TATACACAAAAGGTTAGGATGTTTTATCATCCTTGTACGCGTGTACGCAA
GAGGTTAGGATATTTTTCTTCTTAACAGAAGACGGTGAAGAACAACCTTC
CGTCCTACTCAACTCGGCACCGTCAGAGCTGAAGGATTTCGTTACCGGTA
ATTTCGAAAGCTTAATACTTCCGACTTTTTCACATATTGTCTTTTGCGGA
GAGTCATTCGAGCAGTCAGATGCGGAcggattttcaacgttttccgGTAT
TCGACCGGAAGAACGTGATGCATTGTCAGCACTATTCACACGGTGCCGAT
TCGGTTCGTTCATGTTATCCCTGGCAACGTATAAATGATAAGTTGGTGCC
GACACCGTTCTAGAACGTTGCAGAAACGGTGAATGTCCGTTGCGCGATGT
ATTAGGAGCATGACGTTGTATAGAGCGACGTCGACTTTGTTCTTGATTTG
CGTACGTTCTCTTTTGATACAAATGTAATTTCTTTAACGTATCTTCATCC
ATTTTGTTGTTGTGATTAGGATCTTCAATTTCGATTTCAACTGCTTGTTG
GTGTTGTTGATTTTNATTGTTATGATTAGGATCTTCAATTTCGATTTCAA
CTGCTTGTTGGTGTTGTTGGTTTTGTTTCTGTTTCTTGGTAAAGAAAGGC
ATAATCAACATTCTCGCTTTCAACACTGTTTATTGTGGGTGAGATGCCAG
CGATTATTGTAAAAAGAACTTGTCTTATCTTTGAAGATTGCCTGTCAATC
AACTTCAGTCAAATCAACTCTTGAAGAAGACTATAGTTGTTGGTGTAAGA
ATACCTGTCGGTATGATTAAGTCTACAAGGTCCATTAATTTTCTACAAAT
AATGTCTTCTTGCAGTTTCTTACTGGTCAAATGATTAAACGATTGCTAAA
CTAAAGTCTTATAATAAATGTAAGATCGGGGTACcgaaaagatgtttttt
ttaaatcaagttcCACTCAAGTTCAAATAAGTACTCGAAACAAGATGATC
CAATAACAAggtcttttatttttcttaatgaTATCCCAAAAATAAGCTCA
ACTTTTATGTTAGTTTTTAATATAATTTGACACCTTTCAACCAATGAACA
GGGCGATGAAAAGTTATATCGTATTTAAACAAACAATAAAACCTCAATCG
CAGTATTAAATCCGTAAGCTTTGTTGCTTCTGCGTTGACCTCGTTGATTT
CTCGTCTTGTCCTTAAGTCTTGAAGTTTGATGAGAAAAACAGCACACTTT
TCAcgtccttcttcttcttcgttctttctttttcttattttgaagaCGTC
AGAGAATGTTCTGAAAGTCGTTGAACGCAACCTTGCATAGATACGACTAA
CTCAAAA Run BLAST on NCBI protein sequence of TCONS_00048251-protein >TCONS_00048251-protein ID=TCONS_00048251-protein|Name=TCONS_00048251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MLIMPFFTKKQKQNQQHQQAVEIEIEDPNHNNXNQQHQQAVEIEIEDPNH
NNKMDEDTLKKLHLYQKRTYANQEQSRRRSIQRHAPNTSRNGHSPFLQRS
RTVSAPTYHLYVARDNMNEPNRHRVNSADNASRSSGRIPENVENPSASDC
SNDSPQKTICEKVGSIKLSKLPVTKSFSSDGAELSRTEGCSSPSSVKKKN
ILTSCVHAYKDDKTS Run BLAST on NCBI transcript from alignment at scaffold_141:383907..385663 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048251 ID=TCONS_00048251|Name=TCONS_00048251|organism=Clytia hemisphaerica|type=transcript|length=1757bp|location=Sequence derived from alignment at scaffold_141:383907..385663 (Clytia hemisphaerica)
TTTTGAGTTAGTCGTATCTATGCAAGGTTGCGTTCAACGACTTTCAGAAC
ATTCTCTGACGtcttcaaaataagaaaaagaaagaacgaagaagaagaag
gacgTGAAAAGTGTGCTGTTTTTCTCATCAAACTTCAAGACTTAAGGACA
AGACGAGAAATCAACGAGGTCAACGCAGAAGCAACAAAGCTTACGGATTT
AATACTGCGATTGAGGTTTTATTGTTTGTTTAAATACGATATAACTTTTC
ATCGCCCTGTTCATTGGTTGAAAGGTGTCAAATTATATTAAAAACTAACA
TAAAAGTTGAGCTTATTTTTGGGATAtcattaagaaaaataaaagaccTT
GTTATTGGATCATCTTGTTTCGAGTACTTATTTGAACTTGAGTGgaactt
gatttaaaaaaaacatcttttcgGTACCCCGATCTTACATTTATTATAAG
ACTTTAGTTTAGCAATCGTTTAATCATTTGACCAGTAAGAAACTGCAAGA
AGACATTATTTGTAGAAAATTAATGGACCTTGTAGACTTAATCATACCGA
CAGGTATTCTTACACCAACAACTATAGTCTTCTTCAAGAGTTGATTTGAC
TGAAGTTGATTGACAGGCAATCTTCAAAGATAAGACAAGTTCTTTTTACA
ATAATCGCTGGCATCTCACCCACAATAAACAGTGTTGAAAGCGAGAATGT
TGATTATGCCTTTCTTTACCAAGAAACAGAAACAAAACCAACAACACCAA
CAAGCAGTTGAAATCGAAATTGAAGATCCTAATCATAACAATNAAAATCA
ACAACACCAACAAGCAGTTGAAATCGAAATTGAAGATCCTAATCACAACA
ACAAAATGGATGAAGATACGTTAAAGAAATTACATTTGTATCAAAAGAGA
ACGTACGCAAATCAAGAACAAAGTCGACGTCGCTCTATACAACGTCATGC
TCCTAATACATCGCGCAACGGACATTCACCGTTTCTGCAACGTTCTAGAA
CGGTGTCGGCACCAACTTATCATTTATACGTTGCCAGGGATAACATGAAC
GAACCGAATCGGCACCGTGTGAATAGTGCTGACAATGCATCACGTTCTTC
CGGTCGAATACcggaaaacgttgaaaatccgTCCGCATCTGACTGCTCGA
ATGACTCTCCGCAAAAGACAATATGTGAAAAAGTCGGAAGTATTAAGCTT
TCGAAATTACCGGTAACGAAATCCTTCAGCTCTGACGGTGCCGAGTTGAG
TAGGACGGAAGGTTGTTCTTCACCGTCTTCTGTTAAGAAGAAAAATATCC
TAACCTCTTGCGTACACGCGTACAAGGATGATAAAACATCCTAACCTTTT
GTGTATATTGGTGATAAatattcatttattcattcTATGCATAGATCACT
TGTAATCAAAACTTGGGACGATATTGACTTCTTTATTGTTGGGTTTTTGT
TTGAGAACTCTTATGGAATAAAACAGTTCTGACCTTAATTAATGGATTGT
TACGTATATGAACGTTGAAAGAAAATTGTGACTTGAAGTAGCATGTTTAG
GTTAAGTGACAAGGATCGTGTTGCAAGATTGACGTCATTTATCGTGTGGT
GTATTTTGTAGTTTGatacaaaaattgaatttatatTGTGAAGGTGCAAC
ATATCTTCTTTTAAAGTCATTTATCACATTTTAAAGTTCTAAATGTTGTA
ACGTTTCGATCCCTTTAAATTTATTAAAGATTTGGTATATATTGATCAAA
ATAAAAC Coding sequence (CDS) from alignment at scaffold_141:383907..385663 >TCONS_00048251 ID=TCONS_00048251|Name=TCONS_00048251|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_141:383907..385663 (Clytia hemisphaerica)
ATGTTGATTATGCCTTTCTTTACCAAGAAACAGAAACAAAACCAACAACA
CCAACAAGCAGTTGAAATCGAAATTGAAGATCCTAATCATAACAATNAAA
ATCAACAACACCAACAAGCAGTTGAAATCGAAATTGAAGATCCTAATCAC
AACAACAAAATGGATGAAGATACGTTAAAGAAATTACATTTGTATCAAAA
GAGAACGTACGCAAATCAAGAACAAAGTCGACGTCGCTCTATACAACGTC
ATGCTCCTAATACATCGCGCAACGGACATTCACCGTTTCTGCAACGTTCT
AGAACGGTGTCGGCACCAACTTATCATTTATACGTTGCCAGGGATAACAT
GAACGAACCGAATCGGCACCGTGTGAATAGTGCTGACAATGCATCACGTT
CTTCCGGTCGAATACcggaaaacgttgaaaatccgTCCGCATCTGACTGC
TCGAATGACTCTCCGCAAAAGACAATATGTGAAAAAGTCGGAAGTATTAA
GCTTTCGAAATTACCGGTAACGAAATCCTTCAGCTCTGACGGTGCCGAGT
TGAGTAGGACGGAAGGTTGTTCTTCACCGTCTTCTGTTAAGAAGAAAAAT
ATCCTAACCTCTTGCGTACACGCGTACAAGGATGATAAAACATCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048251-exon-scaffold_141-1491911889:383907..385663 | TCONS_00048251-exon-scaffold_141-1491911889:383907..385663 | Clytia hemisphaerica | exon |
| TCONS_00048251-exon-scaffold_141-1510915933:383907..385663 | TCONS_00048251-exon-scaffold_141-1510915933:383907..385663 | Clytia hemisphaerica | exon |
| TCONS_00048251-exon-scaffold_141-1575043694:383907..385663 | TCONS_00048251-exon-scaffold_141-1575043694:383907..385663 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:383907..385663 . |
Blast
The following BLAST results are available for this feature:
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