TCONS_00048252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048252
Unique NameTCONS_00048252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048252 ID=TCONS_00048252|Name=TCONS_00048252|organism=Clytia hemisphaerica|type=transcript|length=351bp
CGTGACAttacaacaaaaatttattgatGATCAAAACAAACCGAATCCGG
AATTCCAAAATTATATGAAACctgattttgaatttgaaaaattacgtaat
gAAAGTGCAGGTGACTGTGGTGTGGTTTTACCGCCCTTAGCAAGGGTGGA
TCCGGAAGGTAATTTCCCCTGGTGGGTATTATGGTGTATTCTAGCGCTTG
CTTTATTGATCCTGTTATGTTGGTTCCTCTGGATTTGTTGTCCAAGGGCG
TGTCCTGGTTGCTGTGATAGAGTGCCTTGTTGGCGGATGTGTGGCGGTCT
CTGTGGGGAATGTTGTACACGCCCTGGCACGTATTCTTCGTTCAAAGATG
G
Run BLAST on NCBI

protein sequence of TCONS_00048252-protein

>TCONS_00048252-protein ID=TCONS_00048252-protein|Name=TCONS_00048252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
VTLQQKFIDDQNKPNPEFQNYMKPDFEFEKLRNESAGDCGVVLPPLARVD
PEGNFPWWVLWCILALALLILLCWFLWICCPRACPGCCDRVPCWRMCGGL
CGECCTRPGTYSSFKD
Run BLAST on NCBI

transcript from alignment at scaffold_141:407639..407989

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048252 ID=TCONS_00048252|Name=TCONS_00048252|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at scaffold_141:407639..407989 (Clytia hemisphaerica)
CCATCTTTGAACGAAGAATACGTGCCAGGGCGTGTACAACATTCCCCACA
GAGACCGCCACACATCCGCCAACAAGGCACTCTATCACAGCAACCAGGAC
ACGCCCTTGGACAACAAATCCAGAGGAACCAACATAACAGGATCAATAAA
GCAAGCGCTAGAATACACCATAATACCCACCAGGGGAAATTACCTTCCGG
ATCCACCCTTGCTAAGGGCGGTAAAACCACACCACAGTCACCTGCACTTT
cattacgtaatttttcaaattcaaaatcagGTTTCATATAATTTTGGAAT
TCCGGATTCGGTTTGTTTTGATCatcaataaatttttgttgtaaTGTCAC
G

Coding sequence (CDS) from alignment at scaffold_141:407639..407989

>TCONS_00048252 ID=TCONS_00048252|Name=TCONS_00048252|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_141:407639..407989 (Clytia hemisphaerica)
ATCTTTGAACGAAGAATACGTGCCAGGGCGTGTACAACATTCCCCACAGA
GACCGCCACACATCCGCCAACAAGGCACTCTATCACAGCAACCAGGACAC
GCCCTTGGACAACAAATCCAGAGGAACCAACATAACAGGATCAATAAAGC
AAGCGCTAGAATACACCATAATACCCACCAGGGGAAATTACCTTCCGGAT
CCACCCTTGCTAAGGGCGGTAAAACCACACCACAGTCACCTGCACTTTca
ttacgtaatttttcaaattcaaaatcagGTTTCATATAATTTTGGAATTC
CGGATTCGGTTTGTTTTGATCatcaataaatttttgttgtaaTGTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030714XLOC_030714Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048252-proteinTCONS_00048252-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048252-exon-scaffold_141-1491911889:407639..407989TCONS_00048252-exon-scaffold_141-1491911889:407639..407989Clytia hemisphaericaexon
TCONS_00048252-exon-scaffold_141-1510915933:407639..407989TCONS_00048252-exon-scaffold_141-1510915933:407639..407989Clytia hemisphaericaexon
TCONS_00048252-exon-scaffold_141-1575043694:407639..407989TCONS_00048252-exon-scaffold_141-1575043694:407639..407989Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:407639..407989 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.00663556	0.263656	0.399279	0.217186	0.75238	1.45899	0.384478	0	0	2.11633	2.7509	0.483665	1.68624	0.576021	1.07423	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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