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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048204 ID=TCONS_00048204|Name=TCONS_00048204|organism=Clytia hemisphaerica|type=transcript|length=1848bp
AAagctttttctttaaatttggtGCATCAAAGAAGGACTACGAGAAAAAT
GTACATGAATAGAACAACTTATACCAACCGTTCGAAATGGGGGAATAGCA
CCCATGGCAACGAAACAACAACAGATGGTATTGATGATTTGCTTGCTTTC
AACATCAGTGTCGCCGTGCATCGCTTCGTTTATAAGCTTTCTCTACTGGA
TGGTGGCGAGAACTGTCCGAACAAGAGCAGTATTCACATGTTGTTTGACA
GGCTACTTAATTTTCTTAATGGTGatttgtattgtttttttgGGGCTGTT
TTCGTTTTATAAACTATATGACAGCGAAATATTAGTCGTTTTATGGATAA
CCATTTCAGTGTCCACAATAATATACTCAAGGAGAATTTTATTGCATAAG
CGTTTATTCAAACGATACCAACTCTTTTACAATGTTCATTTCAAACGCAA
TGTTTCATTGGAACAAAAACTTTTGACAATTGATAAAGATTTTCCAACTC
TAGCTGAAttaaataatatcaaatttgaGGCtaaaaaagcaatgaaatgg
ACTGTCAAAGAAATTTCGAAAGAATTTGAAGATGCTGAATCATTCGACCT
TATGTTAACTGGAAGCACACGCGAAAGACTTAACATACCTTTGACCGTAA
ACTACAAGGCGAGCCAAGAAGCGGGTGTTATGACTAATACACATGCTTTA
TTAACTGATTACGACTTTATGATTTGCGATAGAATGAATCAAGCAGATTT
CGGTAGAGGGGAAAAGTACGAAATTAGAAATGAAGATACGCCGCCTGGTT
TTGCAAAAATCAATTGCAATATGTCAAACACAATTGTTTCACCAAAAGAG
ATCAAACGCAAGATTTACACGTTTATCATGAATATGCCAGAAGATCAATT
ACCTCTTGTCAATGGAGAAAAATTATCTGCATGTACGCAAGTATGGAAAT
TATTGTTTTCTGTATCAAAGGTTAGTCAAAAAGGACCAGCAATTAGAATA
AAAATACACGAAGGTGGTTCAAGCTTCCTGGTAGATATAACTTTTTCCAT
CAAAGCTAAAAAATGGCCGACAAATTCCGATTGGCTAACAAGAACAAGAA
AATGGCCTTGTTCCGATCTTGTTGAGAAAATTGTACAAGAAGGGTTTCAT
TTGGTTCCGAAGTCACATCCAAAAGATAAAAAGGAAACAACTTGGAGATT
TTCATTCTCAAAAGCAGAAGTCACATTACTAAACGAAATCCAACCAACCG
CTAGAAAATGTTTCGTTTGTCtcaaaattattgtcaaagaTTTTCTCATC
CCATGCAGCAACGAACTAAGTACGTATTATTTTAAAAGCATCTTCATGCA
TGTGTTAGAAAAAACAGAACCGAGTTTTTGGCGGGAAGATGATATCGAGG
CGTGTTTCTATTGGCTGTTCAAACACGTGACTGAAGCCgtccaatcaaaa
caatgtcCGCATTTCTGGTTGAATGGAATCAATTTCTTTGAAGAACTGAC
GGATAGAGATATGAACAAGTTGTTAAAAATGTTGAACAAAATCAAGCAAA
ATCCTTCAGCTTATATTGACGATTCTTTTGTCAGAgacgataaaaatgaa
ttcAACGAATACTCTCCTCTTGTACAAAATGTTTGAATTACAATCTGCAC
AAAATGACTCTCTACTGTATCAGAAATTATTAAGACTTACTATTATCCAA
AAAAGGAATTCAGTTGGTTATTGTTAATCACTTTTTTTTACGTACATAAT
ATTTTATTATGATAAAAACTTTGTCTGACAAAAACATTTCGAGTTTACCG
AATCTTTCAAGCCAGTAAACACTGTTTCAATTCTgtttctgaattatt Run BLAST on NCBI transcript from alignment at scaffold_141:422526..424711- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048204 ID=TCONS_00048204|Name=TCONS_00048204|organism=Clytia hemisphaerica|type=transcript|length=2186bp|location=Sequence derived from alignment at scaffold_141:422526..424711- (Clytia hemisphaerica)
AAAGCTTTTTCTTTAAATTTGGTGCATCAAAGAAGGACTACGAGAAAAAT
GTACATGAATAGAACAACTTATACCAACCGTTCGAAATGGGGGAATAGCA
CCCATGGCAACGAAACAACAACAGATGGTATTGATGATTTGCTTGCTTTC
AACATCAGTGTCGCCGTGGTAAGCTGTGTAATAGTTATTCTTATGGGATA
AATTTTCGCAGGGACTAAATTTCGAGGTTAAGCTCATCCGCGAAATTTTA
AGAGCTGCAATATTTTCTCTATCAAAAGTACAATCTCATAGTGCATTTCG
AGGGTATCAAAAACCTACCATTAAGGGCGGCACATACCGTGGGTCGGACC
ATATGAGTGCCCCCCCATCCCCCGGGTTCCAGGCTCGTAATTGTTAAAAT
TGATCTTAAACCATTAATATTTTTTGACATATTTGAGAGCCTCCTTTGTT
ATTAAAAGTGAAAATGTGATTTTCAATTTTTTTTGACAGCTACTTTGGAT
CTATAGCATCGCTTCGTTTATAAGCTTTCTCTACTGGATGGTGGCGAGAA
CTGTCCGAACAAGAGCAGTATTCACATGTTGTTTGACAGGCTACTTAATT
TTCTTAATGGTGATTTGTATTGTTTTTTTGGGGCTGTTTTCGTTTTATAA
ACTATATGACAGCGAAATATTAGTCGTTTTATGGATAACCATTTCAGTGT
CCACAATAATATACTCAAGGAGAATTTTATTGCATAAGCGTTTATTCAAA
CGATACCAACTCTTTTACAATGTTCATTTCAAACGCAATGTTTCATTGGA
ACAAAAACTTTTGACAATTGATAAAGATTTTCCAACTCTAGCTGAATTAA
ATAATATCAAATTTGAGGCTAAAAAAGCAATGAAATGGACTGTCAAAGAA
ATTTCGAAAGAATTTGAAGATGCTGAATCATTCGACCTTATGTTAACTGG
AAGCACACGCGAAAGACTTAACATACCTTTGACCGTAAACTACAAGGCGA
GCCAAGAAGCGGGTGTTATGACTAATACACATGCTTTATTAACTGATTAC
GACTTTATGATTTGCGATAGAATGAATCAAGCAGATTTCGGTAGAGGGGA
AAAGTACGAAATTAGAAATGAAGATACGCCGCCTGGTTTTGCAAAAATCA
ATTGCAATATGTCAAACACAATTGTTTCACCAAAAGAGATCAAACGCAAG
ATTTACACGTTTATCATGAATATGCCAGAAGATCAATTACCTCTTGTCAA
TGGAGAAAAATTATCTGCATGTACGCAAGTATGGAAATTATTGTTTTCTG
TATCAAAGGTTAGTCAAAAAGGACCAGCAATTAGAATAAAAATACACGAA
GGTGGTTCAAGCTTCCTGGTAGATATAACTTTTTCCATCAAAGCTAAAAA
ATGGCCGACAAATTCCGATTGGCTAACAAGAACAAGAAAATGGCCTTGTT
CCGATCTTGTTGAGAAAATTGTACAAGAAGGGTTTCATTTGGTTCCGAAG
TCACATCCAAAAGATAAAAAGGAAACAACTTGGAGATTTTCATTCTCAAA
AGCAGAAGTCACATTACTAAACGAAATCCAACCAACCGCTAGAAAATGTT
TCGTTTGTCTCAAAATTATTGTCAAAGATTTTCTCATCCCATGCAGCAAC
GAACTAAGTACGTATTATTTTAAAAGCATCTTCATGCATGTGTTAGAAAA
AACAGAACCGAGTTTTTGGCGGGAAGATGATATCGAGGCGTGTTTCTATT
GGCTGTTCAAACACGTGACTGAAGCCGTCCAATCAAAACAATGTCCGCAT
TTCTGGTTGAATGGAATCAATTTCTTTGAAGAACTGACGGATAGAGATAT
GAACAAGTTGTTAAAAATGTTGAACAAAATCAAGCAAAATCCTTCAGCTT
ATATTGACGATTCTTTTGTCAGAGACGATAAAAATGAATTCAACGAATAC
TCTCCTCTTGTACAAAATGTTTGAATTACAATCTGCACAAAATGACTCTC
TACTGTATCAGAAATTATTAAGACTTACTATTATCCAAAAAAGGAATTCA
GTTGGTTATTGTTAATCACTTTTTTTTACGTACATAATATTTTATTATGA
TAAAAACTTTGTCTGACAAAAACATTTCGAGTTTACCGAATCTTTCAAGC
CAGTAAACACTGTTTCAATTCTGTTTCTGAATTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048204-exon-scaffold_141-1575043694:424544..424711 | TCONS_00048204-exon-scaffold_141-1575043694:424544..424711 | Clytia hemisphaerica | exon |
| TCONS_00048204-exon-scaffold_141-1575043694:422526..424205 | TCONS_00048204-exon-scaffold_141-1575043694:422526..424205 | Clytia hemisphaerica | exon |
| TCONS_00048204-exon-scaffold_141-1510915933:424544..424711 | TCONS_00048204-exon-scaffold_141-1510915933:424544..424711 | Clytia hemisphaerica | exon |
| TCONS_00048204-exon-scaffold_141-1510915933:422526..424205 | TCONS_00048204-exon-scaffold_141-1510915933:422526..424205 | Clytia hemisphaerica | exon |
| TCONS_00048204-exon-scaffold_141-1491911889:424544..424711 | TCONS_00048204-exon-scaffold_141-1491911889:424544..424711 | Clytia hemisphaerica | exon |
| TCONS_00048204-exon-scaffold_141-1491911889:422526..424205 | TCONS_00048204-exon-scaffold_141-1491911889:422526..424205 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:422526..424711 - |
Blast
BLAST of TCONS_00048204 vs. Swiss-Prot (Human)
Match: M21D2 (Protein MB21D2 OS=Homo sapiens GN=MB21D2 PE=1 SV=3) HSP 1 Score: 84.7297 bits (208), Expect = 3.727e-17 Identity = 55/205 (26.83%), Postives = 100/205 (48.78%), Query Frame = 2
Query: 962 VSKVSQKGPAIRIKIHEGGSSFLVDITFSIKAKKWPTNS-DWLTRTRKWPCSDLVEKIVQEGFHLVPKSHPKDKKETTWRFSFSKAEVTLLNEIQPTARKCF-VCLKIIVKDFLIPCSNELSTYYFKSIFMHVLEKTEPSFWREDDIEACFYW-LFKHVTEAVQSKQCPHFWLNGINFFEELTDRDXXXXXXXXXXIKQNPSAYI 1567
V KV + G I I + G S L DI + K WP + WL W + E+ V GF+LVP K KK+ WR SF+++EV L I + + + C II+K L+ +S Y+ +S+ + ++ ++ ++D A F L + + +K CP++++ N E L++ + + L+ ++ +P+ ++
Sbjct: 210 VEKVEKNGTIISIILGVGSSRMLYDIVPVVSFKGWPAVAQSWLMENHFWD-GKITEEEVISGFYLVPACSYKGKKDNEWRLSFARSEVQLKKCISSSLMQAYQACKAIIIK--LLSRPKAISPYHLRSMMLWACDRLPANYLAQEDYAAHFLLGLIDDLQHCLVNKMCPNYFIPQCNMLEHLSEETVMLHARKLSSVRSDPAEHL 411
The following BLAST results are available for this feature:
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