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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048256 ID=TCONS_00048256|Name=TCONS_00048256|organism=Clytia hemisphaerica|type=transcript|length=1946bp
gtttttgaaatgttttttaatattttttaaaatttattattgatacctaa
aacctgtcaaaatttgaagtcagttggatgactaggtcaaaagttatgct
aaatttaagatttttggattttacagtgttttagctggattttatgatat
gcctgcacaaaaaagtcataaaacctgatatggtcggtgtataattgtaa
aatttggtaaacatgctgctaataggattatattaaaagtcaagaacttt
cagagtgttaaaaaaaattttcagtgagctattaacaaaagagtgccagc
ctggtggaaaacacccccccctgataaaaatagggttaagacAATAGAAC
ACGTACACCGGAAACATGCGaagcaacgctcgttaaaagataATTACAAA
TCTTTTCCTTTGATAAGTTCGACAATAGGcgaagcgagataccctgcaaa
atttatgagggagtgcagacgatTATGACAtatttcattatcttttgata
aaacaaagacaataattacagtgtcgtaaaaaccgctctcatccataaat
tttgcagggtatctcgctacgcctatgtaAAATTAAACCGTCCATGTCGT
AACCATAATGAAAGTTTTAACCTGGGACCTATCGCAGCCCACGATCCCTG
ACCATATTCTATTGTTTATGGTTGAAAAGACTAGATTGTAATCAATCTTT
TTCTCCGTGGCCGAGAGCTCGTACTCGATGTGGGTGCActacttttcttt
tcttcaggTTGTTCGCACTCGCTTGCGTTTCTTGAGCGCAATTTACAATC
ATTGTTTTTCATCTGTAGACTACCATTCGAACATTTTTTGTACGCATCAA
GTGTAGATTTCGATTCTTTAGCCATTGGTACGTTAGCCTGTAGCTTCTTC
TGGTTTGATTTTAACGAATTCAAACTCATTGTTTTTAAGGGACGTTAGAT
TGATACAAAATAAGTTGTGTTTCTCAAGTTCTGCTCAAATCATAAAGAAG
AGAATATTTTGTGTTGCATGTCTCTTCAACGatcaaattttgtaaataaa
gcCAACTTTTATTGGAGTCATCCAAAACAATTCACAACAAAACAATCACC
TTTAAATTTCAGTCtgtcaaaaaatattgtttcagATATAAAGCACAAGT
ACCACACAAGACTATCAAGTACCAGCTATCATACAtttgcaaagaaaaag
tcaacaaagAAATTTGATGCCTCTGGACTCAGGAAAACAGAATTTGTGTA
GTAATTCGATGAGAAAACTTGTTTAAGTTCGTGCACAAAAACACGCACTG
CGAAACATCTTACTGGTCTTCTTGCAGCTTTTCGTATACAATTATAATGC
TTCTAAATTGCTGGTTATCAAAAAGTCAAGAATAAAATGATTAATTAACT
CTTGATTGATTATTCAATCGTAATACAAGTCATATCATTAGCGTAGGAGT
CATATCTTCCTTTCGAGTACTTTCACTTAAGCGTTTATAATATAAACAAC
TGATAATTTGGAAAGTGCCACGCGCTGGTATTTTCGCGACCAATTGCCGA
CCAATTAGAGTTGGTGAACACTTCATTTGTTCATAAATATCATTTACACT
GTAATCTGAAAGCCCCGAATTAATATAATTTATGATGACTACAAACCAAC
AAGCAATCAGGATGGACTTTCGATCAAGATTCAATCAGAATTTTTTCTTG
ATAGAGACTTTCGGTCCAACCGGGCCATAGAGCTTGCCGACACCGACGTC
GTTCGTGTGAGCTGGTTCCCGTTGACATCTTGATTGAGTAAAGGACCATT
GATACTTTTTGGATCGGTTCGTTTTGCGAGACAATAAGTATTTTGATTGC
ACGAAACATTACCCAAGGATGTTTTTCGAGTGTTCTTTTCCCCTTGATTC
ATGGTTAGCCAGCTACTTTCAGTTGTTTGTCTTCAGTGAGTGAATT Run BLAST on NCBI transcript from alignment at scaffold_141:464425..466370 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048256 ID=TCONS_00048256|Name=TCONS_00048256|organism=Clytia hemisphaerica|type=transcript|length=1946bp|location=Sequence derived from alignment at scaffold_141:464425..466370 (Clytia hemisphaerica)
AATTCACTCACTGAAGACAAACAACTGAAAGTAGCTGGCTAACCATGAAT
CAAGGGGAAAAGAACACTCGAAAAACATCCTTGGGTAATGTTTCGTGCAA
TCAAAATACTTATTGTCTCGCAAAACGAACCGATCCAAAAAGTATCAATG
GTCCTTTACTCAATCAAGATGTCAACGGGAACCAGCTCACACGAACGACG
TCGGTGTCGGCAAGCTCTATGGCCCGGTTGGACCGAAAGTCTCTATCAAG
AAAAAATTCTGATTGAATCTTGATCGAAAGTCCATCCTGATTGCTTGTTG
GTTTGTAGTCATCATAAATTATATTAATTCGGGGCTTTCAGATTACAGTG
TAAATGATATTTATGAACAAATGAAGTGTTCACCAACTCTAATTGGTCGG
CAATTGGTCGCGAAAATACCAGCGCGTGGCACTTTCCAAATTATCAGTTG
TTTATATTATAAACGCTTAAGTGAAAGTACTCGAAAGGAAGATATGACTC
CTACGCTAATGATATGACTTGTATTACGATTGAATAATCAATCAAGAGTT
AATTAATCATTTTATTCTTGACTTTTTGATAACCAGCAATTTAGAAGCAT
TATAATTGTATACGAAAAGCTGCAAGAAGACCAGTAAGATGTTTCGCAGT
GCGTGTTTTTGTGCACGAACTTAAACAAGTTTTCTCATCGAATTACTACA
CAAATTCTGTTTTCCTGAGTCCAGAGGCATCAAATTTctttgttgacttt
ttctttgcaaaTGTATGATAGCTGGTACTTGATAGTCTTGTGTGGTACTT
GTGCTTTATATctgaaacaatattttttgacaGACTGAAATTTAAAGGTG
ATTGTTTTGTTGTGAATTGTTTTGGATGACTCCAATAAAAGTTGgcttta
tttacaaaatttgatCGTTGAAGAGACATGCAACACAAAATATTCTCTTC
TTTATGATTTGAGCAGAACTTGAGAAACACAACTTATTTTGTATCAATCT
AACGTCCCTTAAAAACAATGAGTTTGAATTCGTTAAAATCAAACCAGAAG
AAGCTACAGGCTAACGTACCAATGGCTAAAGAATCGAAATCTACACTTGA
TGCGTACAAAAAATGTTCGAATGGTAGTCTACAGATGAAAAACAATGATT
GTAAATTGCGCTCAAGAAACGCAAGCGAGTGCGAACAAcctgaagaaaag
aaaagtagTGCACCCACATCGAGTACGAGCTCTCGGCCACGGAGAAAAAG
ATTGATTACAATCTAGTCTTTTCAACCATAAACAATAGAATATGGTCAGG
GATCGTGGGCTGCGATAGGTCCCAGGTTAAAACTTTCATTATGGTTACGA
CATGGACGGTTTAATTTtacataggcgtagcgagataccctgcaaaattt
atggatgagagcggtttttacgacactgtaattattgtctttgttttatc
aaaagataatgaaataTGTCATAatcgtctgcactccctcataaattttg
cagggtatctcgcttcgCCTATTGTCGAACTTATCAAAGGAAAAGATTTG
TAATtatcttttaacgagcgttgcttCGCATGTTTCCGGTGTACGTGTTC
TATTgtcttaaccctatttttatcaggggggggtgttttccaccaggctg
gcactcttttgttaatagctcactgaaaattttttttaacactctgaaag
ttcttgacttttaatataatcctattagcagcatgtttaccaaattttac
aattatacaccgaccatatcaggttttatgacttttttgtgcaggcatat
cataaaatccagctaaaacactgtaaaatccaaaaatcttaaatttagca
taacttttgacctagtcatccaactgacttcaaattttgacaggttttag
gtatcaataataaattttaaaaaatattaaaaaacatttcaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048256-exon-scaffold_141-1491911889:464425..466370 | TCONS_00048256-exon-scaffold_141-1491911889:464425..466370 | Clytia hemisphaerica | exon |
| TCONS_00048256-exon-scaffold_141-1510915933:464425..466370 | TCONS_00048256-exon-scaffold_141-1510915933:464425..466370 | Clytia hemisphaerica | exon |
| TCONS_00048256-exon-scaffold_141-1575043694:464425..466370 | TCONS_00048256-exon-scaffold_141-1575043694:464425..466370 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:464425..466370 . |
Blast
The following BLAST results are available for this feature:
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