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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048210 ID=TCONS_00048210|Name=TCONS_00048210|organism=Clytia hemisphaerica|type=transcript|length=540bp
GCTTTATTGGCTTCTCAACTGTTGGAACGGGCCGATTAGATCTCCAAAAC
CACAGAGATGTCATTGTCTTCAGGTTGCTCAAACTCAAAGCTCTCTTCAA
GAACAGTATTGAATCAAGCAACTGGCAATGGATCTCTAAACTTCAGTTTG
ACCAGCAACAATAAACCATCACAAGGGACTAGTTATGGAACAACTTCATC
AATGAACAGTCGAGATGTCAAAAGAGCCAAGAATGGGAGCCAGAAAAAAG
GTGGTGCTCTCAACCAAAGATTATCAAGCAATAATTCAacaacatcatca
tcatcaaattCATAAGATGGATAAAGACGAATCTTATTTTGATCgaatca
taattttcttacaagggtaaaatttttagaaaataatttatttgaagtaa
ttttgaaagagttttttaatttcagttttttagaatatttttaaattttt
tagaatatCTTAAATTATCATTTAATATTTCTATGATCTTCCTGTAATAT
ATTTCAATTGTTAAAATCTTTTCCAATAAGTTGAAATGAC Run BLAST on NCBI transcript from alignment at scaffold_141:468266..477568- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048210 ID=TCONS_00048210|Name=TCONS_00048210|organism=Clytia hemisphaerica|type=transcript|length=9303bp|location=Sequence derived from alignment at scaffold_141:468266..477568- (Clytia hemisphaerica)
GCTTTATTGGCTTCTCAACTGTTGGAACGGGGTAAGATTTGTACATTTTT
TATAACAAAATATTCAAATCAAAATAACGGTCGAACATTGCTCAAAGCTC
AAGCTTAAATACATTTTCACCACCTCCAAGATTAAAAGTTGTAGGGTCCC
TTCTCGTAAATCAGGGTAGGTAAATATGAATACAAATGCATTATTTTAGG
TGTCTGAGAAATATGAGATAATAATTATACTGTTCAGGTATTTTTCTAAT
AGAAGTTATGATAATCTGTGTGTAAAAACATTACGAGGGAATTACAAAAA
GAACCTTTAAAGTACCCAAAGTTCCTTATTTCCCTAATAAGGTTGAAAAA
TTATTATGACCTTGGTACTTTTTTGAGTTTTCTTTGAAAATAACAACATA
CAAAAAATTCATCCAGGTAGCTGCTTTTTTCAGGTTTGATTTATTGGGAA
TTTCAGCAAAATGCTGCATAGCTTATAAATGAGATATGTGCAAGTTCACA
GGTATTTATAAATTACACAAATCGAAGCCTTGTGATTCTTAATTATTTTT
TTTTATTTTGAGCCTTAAAATATTCTTAGTGATTCTTGGTTCTTTTTTTA
ATTGATGGTTGAAATACACGTTTTTCATAAGAACATTTAGATTTTTCGAA
GCCTTCAGATATTCTTAACTTTTTTCAGATTTCAGCCTAAAAATGTCCTT
ATTTTCCTAAGAAATTGGGTGTTTTTGAGTCCGCAAAACCTTTAAAATGT
TCTTAACTTGCTCTTAATATTTTGGCCATTGAAGCCCTATGTTCTTATGT
AGTTAGCAAATAGCAGTACATATGAAAATCATGTTCCATACTTGCCAACA
TGAGTAAATCTGTTTCGTAGAAAGATATATTAAGAGATACAAAAGCATAA
AAGAACGGTTAGCATAACTCTCAAATATCACTCGAACACATCTCTCCTTT
ACTTCTTAAAATCCAAGACAAAAATGCCACGATGGAGAGTATTTATTTAG
TTAGACTCCTTAAATGGAGGTCTTTAACCTACATCAAGGCGTCGTTTTAG
ATTTTTTGCACTTAACTTAGCTTAGTGCAAGGTTTACTTCTATATATTTG
TGTGGGAGGAAAGCTTTAGATCAAGTGGTAATAAAAGAATGCTTTACTTT
GATAAGCTCATGTTATTATATCTCTGCAGGCCTCTAACACGCGATCTCCG
GTCAAAAGAAAAATTTTATACACTTATGCTAAAATGTTATGTAAAGNTGT
TACTGTATCTCTGCAGGACTCTGGCACGCGATCTCTGGTCAAAAGAAAAA
TTTTATACACTTATGCTGAAACGATATGTAAATGAGGGAAAGCAAATTTA
GGTGATTTTAAAACGAACTTTAAAACTACCAGATACTAATTCTTTTACCC
TTATAAGGGAAATAGACTTATGAATTGTTAACCGAGGTCAACTTATTTTG
AAGAGAAGGATGAGGAGGAATAGGGGCATTTGAGACAGCGGTCTCGAATT
CTGAAACTCAATTTATCCGTTTTTTTCTTGGCTTTTTTGGTCAATGGCCT
ATTCTGATAATTTATTCCCTATACAGTTATCAAATTGATAAATCAAGTAA
TAGATCCTTATCCCCAGCAGGTAGGCAACGTCGTTTCAACGTTGATCTAA
CGTTCTATGGACGCTGTGAACATTAGATAAACGTTGAAAAAACGTTGTGT
GCCAGATGGGATAGGCTAAAACAAGGCTCTGAAGTCATGACTTTGAAAAT
TTTGAGCAAAATATTTGATAACACCCCTGTCCCATAATAACTTCATTCAG
GGTAATTCTTTTTAGATTTTAGTAGAAAAAGGGCTTCAATATTCCAGACT
TGTTGAAGCCTATAAATATACTGACATAAAAACTGGTAACTTGAGAGCTA
GACAATGGTTTTAGTACCATTAGAAATGTATTTCTTATGTTCTATTTATT
TCTTTTTTAAAATCAAGTTGTCAGGAGTTATAGTTAGACAAAAATTTGTT
CAAACATGTTAGCAGTGTTAGTCTTTTTTTCAAGCACATCCAGAATTTTT
TGAAGCCTTTGATTTTGATTGTTCTGAAGTTTTTGATGAAAATGATCTTT
ATACCTATATTCTTATTTTCACCATTTTTTTAGTATTTTTTAGTACCCGA
AGGAATCGGGTGTTTTATACCCGGAGGGGGGGGGGCACTCAAGGTAAATG
ACCTACCAGACGTTCGGCCCTTAAGGGTAGGTTTTTCATAGCTTAGCTAG
TGCAGTGTAAGGGTAGGAAATTACAAAACTGCACTGAACTGTACNTTATC
CCGGGGGGGGGGGGCACTCAAGGTAAATGACCTACCAGACGTTCGACCCT
TAAGGGTAGGTTTTTCATAGTTCAGCTAGTGCAGTGTAAGGGTAGGAAAT
TACAAAACTGCACTGAACTGTACTGTAAGGGTAGGAAATAAAAGGCCAAT
GTTTTGGTAAAACTGGCACAAAATTGGTCAATTTTGGAGGAAAAATTCAA
CATTTTCTTGGAAAATTGCAAAAATTTTTCGAGACATTTTGAAAAAGTGC
ACTGCAAGGGTATCATTTTTCATGGAAATTCACTGCACTGTAAGGGTCCG
ATTTTAGAAGCCAAATTTGGGCCGAACGTATGGTCGTTTTAAGATCGAGT
GCCCCCCCCTGGGGTTTTATAGTTTACAGAGCCTTAAAATATTCTCAAGT
TTTCAGCTGTTGAAGACTTATGCTCTTATAAATGGTTTGCTCTTATAAAA
AAAATATGTGTACAAGGAAAATTTTCACAAACCTTGAGATAGAACGAGCA
CTCATTTTACAGGCAAGCTAAGACACGTTGTATGTATTCTCGCATCAATC
GAATGATATTGGATCTAGGTAAAAGTGATAAAAAAATTTATGCGTGTAGC
ATACATTATGCAAATACCACATAAATTATGACTTGTTTTGAGGTCCACTG
TATAATCACTCGAAAATTGTTTAAACGACGATAGACTTTATCCACTAAAA
GGAAACAATTCTAAGATTTTTGCCCATATTTAATCGGGCTCTGATTTTCC
AAATACCTAAGGATTTAGCTGTGAAATTCTAATTCCGATTTTACTTTTAT
TTTAAGCCATTTATCCGAAATTCCGAAATTTAAGGATAAAATCTTCATAA
AAAGATTTTAAAAAATTTGCTTTTAGGATTCCACAATACCAATTTTGTAA
GACTACGGAAACTCGAGTTCAAAAGTTTCGATTTCCACAATATCCAAAAT
CTCGTACTCTTAGGTTCCAAATAAACGGGGGGGGGGGGGGGGGTCGAATA
AACGAATAATGTCGAATAATGACGCTTTAAAAAATTTGATTTGACCTTCC
AAATTATTTAGAAAACTTACTCTTAGGTTTCAAATAAACGGGGGGGGGGT
TGGAAAATTTTCTAGATTTCAATAAACGTGGGGGACCTAATTGCCGGGGG
GTTGGAAATTGTACTCTGGATCTTCTGGTTCCCTTATTTTGAATTAGTTT
CGAATGCTAACAAATTTTCACTTAAAAACTGACTTTTTGAGTACCCAGAG
GTGCTTTGTCAAGGGGATTTTAACTAGTATAATTGTAAATCATAAGAATA
TTTACCATATAAGGCAGCATATCTCAAAGATGCTTAAACATTCTTACTAA
AAAATCTGGTCCTGACTCCTTTTTACGCTGAACTGTTGGCAAAAAAGCCA
ACATAAATTATACTTTCTCATAACGTTATATAATGACACAAGTATAAAAT
CTTTGCCAAAAACTTTCATCCCTAAAACATTCTTTTTAAGAGATGACCCA
AAAGTCATTACACGTAAAATAATTGCTTTCTCGAGATTTCTAAACCAATC
AAAACACGAACACCCCTGATTCATACAACACCCCTGTTTCACAACTCCAC
TCAGAATTTCTCCCACAGTGGGGGTTAACTTTTTTCGAAATCTCAATGGG
ACTTCTATTGCTCTTGAGTCGAAATACAGATGGGAAGGTTTTGGAGTGCA
ATTTTTTTCATTGGATTTCAAATGGGGATGAAATCAAAGTAAATTCCCAG
TGGGACTAAAATTGTAAACCCGGTAATTTTTCTCACCTGGAGACTGTGAC
ACGATGATATACAGGGTGTCCGGAAAAAAAGTATCGAGTTTGAACATGAT
TCTGAGTAGAAGGTTGTTGCATGTGTTTAACTAAATGTAAGAAAATATAT
ACCAACACAATAATTTTTTCCAACAGTCATTATGATTAAAAATAATTAAC
TTTCTTTACAATTTTCATGACGTTAAAGTTATTGAGAATTGTTTTTTGTA
AAAGTTATTCATAAAATCAAAGACTTAGATAAAATTAATATGACACAGAG
AGAAACTTTGATAAACATTGCAAATTTAGTGAAACACACACAAGAACTTT
CTTTCTATAGAAGTGGTACGACTCGATACTTTTTTCCGGACACCCTGTAT
AAGAGAACAGAAAGATCATTTGGCGACCAAAACCATTAATCTTAAAGCCC
TTAAGGAGGCTAGGTTTGAAACTCTTGCATGCAAGGTGAAGCCACTTATT
CCCATCAAAAACGTGTGACCCTCGTGGTTTAAAAAACAAACGCCAGATTA
AAAGTAAAATCCATTGCAAGATTTCGAAAAAAAATGCAGCTTTAAAATAA
AGAAAGGGATAGATTCAATCTATCATTTTTAATGCGGCGCAAATCTTAAT
GCTTCCGCTTTTTCTTGCTCGAGAAAGGTTAAAAATTGCCTGTACCAGAT
GACCACGGCTTTTTGGTATTTGTTCTCCGCCGTACCGTTTTGGTACCAAA
ACAAATATGGTGTTGAGGCACGGTTTTCCACCGTAGACGCGAAAGTGGTA
ACAAGTGATAGACCAACAGAGTGATAAAAAACCGCGTGTTGGGATAGAGA
TTGAGATTAGGTTGAAAATTCCTTTCTAGCCCCTTCGGGGATTTAAACTA
AATGAAGCAAATCCGACTGACTCAGACCTATCGAGAGGATTCACTAAAAT
CGTTCTGAGTAAAACAAGCCTACACCTTGAGTATATTTTCCTCGCAGATG
TATGACGTGTTATTTTATTCATTTTTAGCCATTTTCTACTGTGAAGATGC
GTCCAAGAAAACATTTGGCTTCCCAAGCTGGCACAACGTTGTTTCAACGT
TTATGTAACGTTCACAACGTCCATATAACGTTAGATGAACGTTGAAACAA
CGTTGTGTGCCAGCTGGCTTCGTGTTAATTTATATGCCGTTCGCTACCTA
TTTTGCCCCTATTTTGACCCAAATGGCAGCGACAGTTCAAACACTATGAA
CAAGCTCGTGCAATGATGGCAGTGAATCGTTTCACAGACTCAATCAATAG
AATCTCAGTTACAGTTCTAGACGATCATATCGTCTACACAAGATCACTAA
AAAAGGGAATAGTTTAGAAGAGGCGTGATAAATTCGGGTGGAGTAAGCAG
TGGCGGAGATGTTTACATGTTTACACGAACACTTGTATGGTTTGTCGAAA
TCTTTATTTAATTAAACTTGAAAACGATATGCCACTTGAATTGGCCTACC
TGTTTGAAACCCAGAGGATCAAATTTATCGAAGCAATTTTTACTCCTGAA
TACATCTCCAAAAGTGATGACGATATTGAATTGGTCGTTTGGATGTTCCG
CGGTGAACGTGACGCATTATCAAAACTTTTGAATGATTTCCTTAAGTTTT
ACTCAGATGTTTACTGTCAAAAAACATTCAAAAACTCCATCTAGTGTTTC
ATCAGCACAGTGCAAATAAGAGAGTAATTGCAGAGGTGTAGCGCCCATGC
TTTCAGTAAATGAGTCAAAAAAATTTTGTGGCGAAGGTTTTTACTTTTAC
CAATAAGAGGGTATTCATCCTTCAAAAAAATTTGTCATTTTCGGTCTTTA
GACATTCTGGTGTTCAATAAAGTTTGTTCATTTATGCGGGGTCGAACCCC
TATACAAGCAAACAAAATCTCCTTTTCTAGAAGGGTATTTCCTACCAAAT
GTTTTGCCAACTCGGATCATCTTTCAATTTTTCTAGCGTCAAGAGTTACT
ATTAGTTTTATTCTAGAGTTTTTCTTTTAGTTTTCTACTGAAATCTTAAA
AGACTTAAAGTCAGGGTAGGTCTTCAGCCTCACAAATAAGAAATTTTAAA
TATAATTTCTCCCTTGATATAAAAATTTGGGCCATTCGGGGAAATTTTTA
AGAAATTTTTCCTTAGAGGAAAAAGAATTGAGTAAAAGAAGAAAACAAGA
GAATATTTCGCCATTTTTTTGCGGAGATGTGTACCCAATAAGTCCCACGC
TGGGAGCAATTTTCTGAGCCACAGCAGTACAGCCTCGTTAATCGGCAGTG
GTAAAATTCATCCCCTGGTGCTACCTCCGATGGTTTTCGAGGTCCGGACT
GTACATATCCGTAACCTAACATCCCATGAGATAAGTCCTTAGAACGTTAG
GTGAACGTTGGAACAACATTATATATCAACTGTGCATGCAGATACTATGT
AACTATGATATTATGTCTTCTTATGTCTTTAATATACTACAATATTGATA
AATATACACGTTTTTTATAAGAAAAAACTATATAAGAACATAAGGCTTTG
ATGGCCAAAATGTTAAGAACAAGTTAAGAACATTCTAAGGCTTTGCAAAC
TCTAAAACACCCAATTTCTTAGGAAAAAGGACAAAAATGCTCAAAAATTT
TAGGCTTAAAACTCAAAAAGTTAAGAACATCCGAAGGCTTCAAAAATGAT
TGGCATGCCAAGTGCTGCTCCTTTTATTCAGTTTATGAGGAAATGAAATT
GTGTATGTTACCCAGTTTTGCGCATCTTTACCAGGAAAAAGTTTACCATG
AAATAAATGTTCTTTTTCTGCGAAAATCCCCTTTCACTCACATTTGGCAC
GGAGAACAATCCTTTCAGCTACAAGCACATTTGACCAACACAACTGACGT
ACTTTTGCGAAAGGTTTTTGTACATAGAAGGTATTTTATTTAGTATACTT
GAGATAAATAAGAAGAATTTTTAATAGAAACGACCCTCAGCTCACGTAGT
TGTTTCCGGAAATATGGATTATAGCAATTTTTACCGAAAATTCAAACTGA
AAAGTAAAAATTTTTAGAATATTTCGAATACTGTTAAAATAAAATATCTT
TGTCCGTCATCCGAAAGCTCTCAAATTTAATATACCAGAGGGGTAAAAAA
AAAGTATTCCAAAATTTAAAATCTTACAACTCAAGAATAGGTTATTTTTT
GGATAGAAATTTTAAACATTTTATTCATCCTATTACAGACCTTTGGTCAA
AATTTCAAAGGCATACATTGATTTTTCGGGAAGATACAAGATTTTATGAA
ATTAGTATAAAATTTTCATTGTTCAAAAAGCTGACATCAAAAAGATTATT
GGGAACGATTCTTTAAATAACAAAAAAACTAACTACTACAAATCAAGGAT
AAACTGACTTAAAATCTAATAAACTGATTTTGACAAAGGTATGTAAGGCC
TATAAAGATCTAAAAAAATCGTAACGAAGTAAGTATATGCCTTATGGGTA
CAGAAAGGTGATACCTTTGGTTTGAAAGATGAACTCTCTTGTCTATTTTC
CTAAATTTAAGATTCCAAGGCATATTGCAATCCCCCTGAAAATCGATTAA
GAGAGCGTCGACTGCAATGTACTTAAATTATCTAGAATTCCACAAAAGTT
CAAGGCTATGAAGGGAGGCTTTGAAGCCCGAGTTCAATACCCACCGTGTC
TCTACGATTCACTTGGCAAGTGAATATACCTTTGCCCGGATCAACCAATG
CCATGTGAGGGGAATTGGGTACCATCACTCTGATATGATAGTGTGGGTAG
ATTAGACACTCATAAGGTTCGGCCTCGCGTGAGCATTGCTCCCCCAGTGT
CGTTCGAGTGTCATGGTATACGCCATGGCTTGGCAGCTCGCGTCTGTCAA
GTTGTAGTGTCTGTTAGCGTCGTGATTCCTGGGGCTCATATCCTTTGAGC
CTCCTAAAAATTGTACGTATACCCTTTTTGAAATTCAACTATAATGGAAT
GAAAATCAATAGAAACTTTAAAAAGGCTGCAAAAAATCCCTCGTATGCAA
GCAATACATGCACAAAAATGATGCACTTTTCGTGTGTTGATAGAATGCAT
GGGAGGGAAAACATGGCAAAGAATTTTTCTCAGAAAGTTACAAACTTCAT
CTCGTTTTGATTTTTTGTATCATTTACTGGCCTCTGATTGGCTGATCCAT
TGAACAAAAAGGTTCAAATTGATTGGTTAGATTTTTGGATAAATTGAAGG
GCTTTTCAGACTTAGAATCTAAGAAACTGCGTTAAAAAAGAAACGACATA
TCAGCTCAATGAAATAACAACTTTCAAAAAAATTTTCACGTACATACAAG
GTAAGCTTTTACAAGATTGTCAAAATTCATCTCATCAAATCGTCTGATTC
TGGACCCACTGTCATACATTCATGACTGATTTACCATTTTTGTAAGGCTT
TGAGCTTGTATGTCTTTGAGGGAAAGGACACTCTTAAAGTCAACCAATTC
GAACAATCGCTAGTTAGGGTGGAGAATGTGTAAGAGCTACTTCAAATTTT
CTCTTCAGCAAATAAGAGAGCACAACGTTGATATTTTTGGCGAGAAAACT
TAAACCTCCGTATTTCAAACCTTCTAATTTTTTCACCTTCTTAACACAAA
TTATTTTTTTCTGACACTTTCGGCAACACCTTTCTAAAAGAATGAAATAT
TTTTCTGAGAAAGATTTCTCAATCCATGAATTATTTCTGTTTAGCCGATT
AGATCTCCAAAACCACAGAGATGTCATTGTCTTCAGGTTGCTCAAACTCA
AAGCTCTCTTCAAGAACAGTATTGAATCAAGCAACTGGCAATGGATCTCT
AAACTTCAGTTTGACCAGCAACAATAAACCATCACAAGGGACTAGTTATG
GAACAACTTCATCAATGAACAGTCGAGATGTCAAAAGAGCCAAGAATGGG
AGCCAGAAAAAAGGTGGTGCTCTCAACCAAAGATTATCAAGCAATAATTC
AACAACATCATCATCATCAAATTCATAAGATGGATAAAGACGAATCTTAT
TTTGATCGAATCATAATTTTCTTACAAGGGTAAAATTTTTAGAAAATAAT
TTATTTGAAGTAATTTTGAAAGAGTTTTTTAATTTCAGTTTTTTAGAATA
TTTTTAAATTTTTTAGAATATCTTAAATTATCATTTAATATTTCTATGAT
CTTCCTGTAATATATTTCAATTGTTAAAATCTTTTCCAATAAGTTGAAAT
GAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048210-exon-scaffold_141-1575043694:477538..477568 | TCONS_00048210-exon-scaffold_141-1575043694:477538..477568 | Clytia hemisphaerica | exon |
| TCONS_00048210-exon-scaffold_141-1575043694:468266..468774 | TCONS_00048210-exon-scaffold_141-1575043694:468266..468774 | Clytia hemisphaerica | exon |
| TCONS_00048210-exon-scaffold_141-1510915933:477538..477568 | TCONS_00048210-exon-scaffold_141-1510915933:477538..477568 | Clytia hemisphaerica | exon |
| TCONS_00048210-exon-scaffold_141-1510915933:468266..468774 | TCONS_00048210-exon-scaffold_141-1510915933:468266..468774 | Clytia hemisphaerica | exon |
| TCONS_00048210-exon-scaffold_141-1491911889:477538..477568 | TCONS_00048210-exon-scaffold_141-1491911889:477538..477568 | Clytia hemisphaerica | exon |
| TCONS_00048210-exon-scaffold_141-1491911889:468266..468774 | TCONS_00048210-exon-scaffold_141-1491911889:468266..468774 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_141 | supercontig | scaffold_141:468266..477568 - |
Blast
The following BLAST results are available for this feature:
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