TCONS_00048211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048211
Unique NameTCONS_00048211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048211 ID=TCONS_00048211|Name=TCONS_00048211|organism=Clytia hemisphaerica|type=transcript|length=751bp
atttatttctcTGGAGGGCCGTTCCtgttttccaaaataaattcaAGAGC
TGACATATCACATGGAACCGATAGCACTTTGATATCACACAGATGTGAAA
AGAAATCTCTTGTAAAAACACTTTTGAGTTCTACTATTGTACGCTTTAAC
TTCTTAAATTTAGAAACTTCAACATGTCTGGTAGAGGAAATTCGTTGATG
AGCAAAGGTCTTAACAGCAACAACAGCAGCAGTAATTCCAAAACCAAATC
TAAACCAATTGGTATCAATACTGGAGGTTCAAGCAGCTCCATTTCCACCT
CATCAAGTGGCAGTTACGGTTCCCCTTTAAACAGTGGAATTCATTATTAC
GGATGCCAATCAACTATAGTGAGGCATGATATTAACTATAGCCTACCAAA
ACAAGAACCAATCCCTAAAGCCAGTAATTTAGGCTATGTCACTCATAAGA
ATCATGaaacaaaactttataaagGAAAATGATCAATTCTTTAGAACACT
TGACCATACATGCTACACATACCTAAAGACCATTCGCCTTAAAGTATACA
CTCTTCTTTGCTTACCATCATATGTGTAAACTATTGATATAAGTCCCTCT
TCTACAGAGGTTTTTACACCAAATGTTATATTTTTGGATTTGTACATAGA
AAATACTGTAAATAAATCTTTATAAAAGCTTTTCCCTAGAATTATCATTC
AGCTTAAAAGTTCTGTAAATAGTTTTCTAATTTTCATAGAAATAATTAAA
C
Run BLAST on NCBI

protein sequence of TCONS_00048211-protein

>TCONS_00048211-protein ID=TCONS_00048211-protein|Name=TCONS_00048211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MSGRGNSLMSKGLNSNNSSSNSKTKSKPIGINTGGSSSSISTSSSGSYGS
PLNSGIHYYGCQSTIVRHDINYSLPKQEPIPKASNLGYVTHKNHETKLYK
GK
Run BLAST on NCBI

transcript from alignment at scaffold_141:480643..481705-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048211 ID=TCONS_00048211|Name=TCONS_00048211|organism=Clytia hemisphaerica|type=transcript|length=1063bp|location=Sequence derived from alignment at scaffold_141:480643..481705- (Clytia hemisphaerica)
ATTTATTTCTCTGGAGGGCCGTTCCTGTTTTCCAAAATAAATTCAAGAGC
TGACATATCACATGGAACCGATAGCACTTTGATATCACACAGATGTGAAA
AGAAATCTCTTGTAAAAACACTTTTGAGTTCTACTATTGTACGCTTTAAC
TTCTTAAATTTAGGTAAGCATAATTATTTTACAACTGAAAAACCCTGCAA
AGCTGGAATTCTTGTCTTACAAATCCACTACCCCACGGGTTCTCTTTACC
CCTTGAAAGAGGGCGAAAAATCTTCCCTGGTGAAAACGACATCCTGAAAT
CACACACCAAAGATTTGTGAGACAGGGGTGTATTTAGATATCTGTGATGC
AACCTTTTCAGCATGACCCTTTGTAATTCAGACCATATATATCCCTTTTA
CTTTTTCTTTCTTTCTCAATCTAAACTTTTGTTATGGTTATCAAATTTAT
GAAAACTGTTTGTTTTACTTCACAGAAACTTCAACATGTCTGGTAGAGGA
AATTCGTTGATGAGCAAAGGTCTTAACAGCAACAACAGCAGCAGTAATTC
CAAAACCAAATCTAAACCAATTGGTATCAATACTGGAGGTTCAAGCAGCT
CCATTTCCACCTCATCAAGTGGCAGTTACGGTTCCCCTTTAAACAGTGGA
ATTCATTATTACGGATGCCAATCAACTATAGTGAGGCATGATATTAACTA
TAGCCTACCAAAACAAGAACCAATCCCTAAAGCCAGTAATTTAGGCTATG
TCACTCATAAGAATCATGAAACAAAACTTTATAAAGGAAAATGATCAATT
CTTTAGAACACTTGACCATACATGCTACACATACCTAAAGACCATTCGCC
TTAAAGTATACACTCTTCTTTGCTTACCATCATATGTGTAAACTATTGAT
ATAAGTCCCTCTTCTACAGAGGTTTTTACACCAAATGTTATATTTTTGGA
TTTGTACATAGAAAATACTGTAAATAAATCTTTATAAAAGCTTTTCCCTA
GAATTATCATTCAGCTTAAAAGTTCTGTAAATAGTTTTCTAATTTTCATA
GAAATAATTAAAC

Coding sequence (CDS) from alignment at scaffold_141:480643..481705-

>TCONS_00048211 ID=TCONS_00048211|Name=TCONS_00048211|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_141:480643..481705- (Clytia hemisphaerica)
ATGTCTGGTAGAGGAAATTCGTTGATGAGCAAAGGTCTTAACAGCAACAA
CAGCAGCAGTAATTCCAAAACCAAATCTAAACCAATTGGTATCAATACTG
GAGGTTCAAGCAGCTCCATTTCCACCTCATCAAGTGGCAGTTACGGTTCC
CCTTTAAACAGTGGAATTCATTATTACGGATGCCAATCAACTATAGTGAG
GCATGATATTAACTATAGCCTACCAAAACAAGAACCAATCCCTAAAGCCA
GTAATTTAGGCTATGTCACTCATAAGAATCATGAAACAAAACTTTATAAA
GGAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030681XLOC_030681Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048211-proteinTCONS_00048211-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048211-exon-scaffold_141-1575043694:481543..481705TCONS_00048211-exon-scaffold_141-1575043694:481543..481705Clytia hemisphaericaexon
TCONS_00048211-exon-scaffold_141-1575043694:480643..481230TCONS_00048211-exon-scaffold_141-1575043694:480643..481230Clytia hemisphaericaexon
TCONS_00048211-exon-scaffold_141-1510915933:481543..481705TCONS_00048211-exon-scaffold_141-1510915933:481543..481705Clytia hemisphaericaexon
TCONS_00048211-exon-scaffold_141-1510915933:480643..481230TCONS_00048211-exon-scaffold_141-1510915933:480643..481230Clytia hemisphaericaexon
TCONS_00048211-exon-scaffold_141-1491911889:481543..481705TCONS_00048211-exon-scaffold_141-1491911889:481543..481705Clytia hemisphaericaexon
TCONS_00048211-exon-scaffold_141-1491911889:480643..481230TCONS_00048211-exon-scaffold_141-1491911889:480643..481230Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:480643..481705 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.717073	0.204972	0	0.523129	4.65808	9.26803	19.4021	21.1006	9.7294	10.9293	43.2802	34.7318	16.0751	13.7061	5.77899	6.48093	0.865702	2.13254	1.10561	1.81998	0.871827	0.592169
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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