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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048259 ID=TCONS_00048259|Name=TCONS_00048259|organism=Clytia hemisphaerica|type=transcript|length=1558bp
GAAGTATTAATATTATAAGAATTTGATTAATTCTTGTgtggatttgaatt
ttggaaGATTGGGAAGTTGAAAGCCTGAGACGAGTGAAGATTAATATAAT
TTtcataaagattttttgttacatttacaAAAACGTAGCGAGAATCCATG
TTGGTAGGGATGTACTtggaaatgttttcaaaattcgccaaaactTATCG
GGTGCAgagaaatttaaaataaatacacTTGTTTCTCCAAACTTCAGTTT
TAAAACCCTCTCCCATAAAGCTTGTAAATACATGCTTTATAACAAAACCA
TTCCATAGCGGATTATGTTTTACTTTATGTTTATCTTTATTAAGAATAGG
AAGGAAGCTTGTGTAAGAGTATGTCATTATATGATGATCATTTCTCTTAT
AGTCAAATACACTTTATCTGATTTGCGTTTCATTAATAGACAAAGTTGTA
CTCGTGTCAGAGCAAATGTCGGTTTGTTGGTCTGGTTGAATGTTTCTTTC
AGGTTTTAAAAGTATGGAATTTTTAGTCTCCGGAATCTTTGATATTTTAG
CTTTGCTTGGGGCGTTCGGGATTAAGGTGTTCAGATGTTCCATGACAGTG
CGATTTATTTGTGTTGGCAACTATTATTCACCTAAAACTGTCGCCCAACT
GAAGACAGGTTTCCAATCAAGTTTTGATTAGCTATCAATGAGcgcccccc
agcggaccttcaattcacgcaatcacgcaaattttttccgaaactcacgc
attcacgcaatctcttttcgcaattcacgcaatttttgtttaCGCAAAAC
TTTCCAATTTACGCATTCATCCAAGTGAAAAACACCCATTTACGCATTTC
ACGCAAatcgctggggggggggcattaATGGTGCATGATTTTGAACAGCA
GCTTTCTTTAAATCCTAAGACTTTCTAATTGATGAGCCTTAACATAACCT
TTTTATGGTTCTGAGTTAATAGACCTTttaataaattacgtcacgaacat
cacttgtctCGTACATTCAAGCAATctccatggtgattatgtctcctgat
ttttttatgaataggaagtagttttagtAAAATCCGAAGATACATGACTT
AAGGTAACGTTTCATGTTTTCATGAAAAAGACCTAAAGAGCATAAAGGTT
AATTATCAGTTTCTGACATCGACAGAGTCAAAGATATCTGCATAAAGTCA
ACCTTtgtactattttttttttcgacaaaaTTGTTTAATACCGGATAAAA
CGTAATAAACACAGGATTAAAATTTGCAATGAGGAAAAACAACGGTATTA
CACTGCACGTTATAATGGAAAGGAAGTTTTAATCAAGAGCTTATGATCCG
GGTGCTTGATAATAAATTACCAGTTCGTTTTACATGTATGGTTGTATTAA
GGAGTTCGCGAGTATCAAGTTTATCATGGAGAATATATTATATGAAGTTT
GAAACCTCCTCAGTGAAAACCGCTTGTGATAACTGGTAAAAACCTCAAAA
TCTGAACTACTCTCAGAATTGTAAGCGTCTGCCTTTCCTTGTACACAGGA
ACGCGGGG Run BLAST on NCBI transcript from alignment at scaffold_141:512225..513782 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048259 ID=TCONS_00048259|Name=TCONS_00048259|organism=Clytia hemisphaerica|type=transcript|length=1558bp|location=Sequence derived from alignment at scaffold_141:512225..513782 (Clytia hemisphaerica)
CCCCGCGTTCCTGTGTACAAGGAAAGGCAGACGCTTACAATTCTGAGAGT
AGTTCAGATTTTGAGGTTTTTACCAGTTATCACAAGCGGTTTTCACTGAG
GAGGTTTCAAACTTCATATAATATATTCTCCATGATAAACTTGATACTCG
CGAACTCCTTAATACAACCATACATGTAAAACGAACTGGTAATTTATTAT
CAAGCACCCGGATCATAAGCTCTTGATTAAAACTTCCTTTCCATTATAAC
GTGCAGTGTAATACCGTTGTTTTTCCTCATTGCAAATTTTAATCCTGTGT
TTATTACGTTTTATCCGGTATTAAACAAttttgtcgaaaaaaaaaatagt
acaAAGGTTGACTTTATGCAGATATCTTTGACTCTGTCGATGTCAGAAAC
TGATAATTAACCTTTATGCTCTTTAGGTCTTTTTCATGAAAACATGAAAC
GTTACCTTAAGTCATGTATCTTCGGATTTTactaaaactacttcctattc
ataaaaaaatcaggagacataatcaccatggagATTGCTTGAATGTACGa
gacaagtgatgttcgtgacgtaatttattaaAAGGTCTATTAACTCAGAA
CCATAAAAAGGTTATGTTAAGGCTCATCAATTAGAAAGTCTTAGGATTTA
AAGAAAGCTGCTGTTCAAAATCATGCACCATtaatgccccccccccagcg
atTTGCGTGAAATGCGTAAATGGGTGTTTTTCACTTGGATGAATGCGTAA
ATTGGAAAGTTTTGCGtaaacaaaaattgcgtgaattgcgaaaagagatt
gcgtgaatgcgtgagtttcggaaaaaatttgcgtgattgcgtgaattgaa
ggtccgctggggggcgCTCATTGATAGCTAATCAAAACTTGATTGGAAAC
CTGTCTTCAGTTGGGCGACAGTTTTAGGTGAATAATAGTTGCCAACACAA
ATAAATCGCACTGTCATGGAACATCTGAACACCTTAATCCCGAACGCCCC
AAGCAAAGCTAAAATATCAAAGATTCCGGAGACTAAAAATTCCATACTTT
TAAAACCTGAAAGAAACATTCAACCAGACCAACAAACCGACATTTGCTCT
GACACGAGTACAACTTTGTCTATTAATGAAACGCAAATCAGATAAAGTGT
ATTTGACTATAAGAGAAATGATCATCATATAATGACATACTCTTACACAA
GCTTCCTTCCTATTCTTAATAAAGATAAACATAAAGTAAAACATAATCCG
CTATGGAATGGTTTTGTTATAAAGCATGTATTTACAAGCTTTATGGGAGA
GGGTTTTAAAACTGAAGTTTGGAGAAACAAgtgtatttattttaaatttc
tcTGCACCCGATAagttttggcgaattttgaaaacatttccaAGTACATC
CCTACCAACATGGATTCTCGCTACGTTTTtgtaaatgtaacaaaaaatct
ttatgaAAATTATATTAATCTTCACTCGTCTCAGGCTTTCAACTTCCCAA
TCttccaaaattcaaatccacACAAGAATTAATCAAATTCTTATAATATT
AATACTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048259-exon-scaffold_141-1491911889:512225..513782 | TCONS_00048259-exon-scaffold_141-1491911889:512225..513782 | Clytia hemisphaerica | exon |
| TCONS_00048259-exon-scaffold_141-1510915933:512225..513782 | TCONS_00048259-exon-scaffold_141-1510915933:512225..513782 | Clytia hemisphaerica | exon |
| TCONS_00048259-exon-scaffold_141-1575043694:512225..513782 | TCONS_00048259-exon-scaffold_141-1575043694:512225..513782 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:512225..513782 . |
Blast
The following BLAST results are available for this feature:
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