TCONS_00048180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048180
Unique NameTCONS_00048180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1787

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048180 ID=TCONS_00048180|Name=TCONS_00048180|organism=Clytia hemisphaerica|type=transcript|length=1787bp
AAAGAGAAATCTCATCGCGTTTGGAAGTGAAGCCTGGAAAATTGTGGACT
TTGGTTGTAAAATTAGaaatttgccCATTGTGGAAAAATGCATATTAGAA
TGATGAGATGAtggcaaaatttatttttgagttaAACTTTTTTGCATGCT
TCATCTTGTTTGTTAAATGCAATACTGAACTACTGAATGAGGAATGGATA
AACAATGAAGAGAGTCACAAGATTTTGCATCGATCACGACGCTCTTCTTC
CACAACCTACTGCAGAATACCCTGTGGTACTTTTTGAAGGAATAAATTAC
AACAATTGTTCAGCTAATGGAAAACATCGACGACTTAGAACTCAAGTCTT
TGAAAAATGGTCCGAAAATTTGTCAGGTCCGAATAGAGCTCGAAAACATA
AATGGAATTCTATGTTGATGTTACCTGGAGCTAATCTCACTTTTCGTGCG
TGTTGTCCGAGCGGAAATAACTACCTATCTACTGTGGACAATTGGAACAA
CACAGCGAATCTCCATTATTCGGTTTTAACACAAGATGACTTGAAAGGGC
CCACTGGTATTTGGTATGAAAGATGGCTGCATTGGGTGATGTCTTTTTAC
ATAAGAGTCGATGATCCGGTTGACACAACAAGCCTTCCTTCTACTTGTGG
TGATAACGGTGCATGTTATTATGGACAATGTGGATTGACAGGGAAGTGTG
AATGTGCGGATGGCTATTCTGGTGTTGATTGTGGAACTGCTCCAACCAAC
GATTCTTACCCAACTGAGAAGAAACCGTTAGTTTTGTTCAAGGATGTTGA
TTACACAGGAACCTACTTACCTGTCAACCCAGACGATTTCAAACGGTTCG
CTTACAATCAACGCTCGGCCCGCGAGATGGAATACAAATCAATGCGCGTT
CTTCACAATCGTACGATGATGTTCGCACGGAATATTATCTATACACAGAA
ATTTACGCCTGGTGATGATATCCCAGACATGGCGGAATTCATGATCGCCA
ACCCCAATGTGGCGGATGGGATTTGGTACAACTACGATCCTCATTACGAA
GTAGACTTTCACGTCAAGGTTGAGATGAGCGGTGCATGTTTCAATTGTAG
CGAGACAAATGGTGTTTGTTATACTGGATCTTGTTTGTGTAAGACAGGAT
TCACTGGCGACTATTGCGATGATCCAGTGTAATTATGATATATGACATGC
TTAAATCCAAACTAAGTCATTTTCCCTGTCGGAAACACCCAATAAAGCCG
agatttttttgctgtttcagTACCAAATAAGCGTCAAATTACGGTTTTTT
GGTTGTTTCCGATAGTTACAAAATGACGTAATTTTATCTTTCCACCACGC
ATATATATCAAGAGATTTCTGTATTTTGATTCATTCTTATTACGAGAATT
TATTGAAATGAATGATAGAGTATTAATGTGTGTAAAATAAGTAACGAAAA
ATGGTGTCGGCTATGCAGAAATACGACGACCCGGATTGTATTTTTATGAT
ATAAGATATACTCTCTCCTTATGATTTTTAAAGTGCTATCCAAGGTGAAC
ATtttctttaccttaaaggaaacAGTGTTTTTATGTATGAAATGGCCAGC
TAAATTTTCTAGATATGATTACTCGCATCAACCAAATTGCCCAAGGATGT
TTCTAAAATCTTCTATGGCGGTGTTCTGAGCCTGCTTGTAAACTGTGCTG
GATAAGTTTTTGtaattgatgatttttttatttccactTGTAAATATTTG
CAACTTCTAttttgatgatgatttttgtgAACATTTT
Run BLAST on NCBI

transcript from alignment at scaffold_141:523248..536911+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048180 ID=TCONS_00048180|Name=TCONS_00048180|organism=Clytia hemisphaerica|type=transcript|length=13664bp|location=Sequence derived from alignment at scaffold_141:523248..536911+ (Clytia hemisphaerica)
AAAGAGAAATCTCATCGCGTTTGGAAGTGAAGCCTGGAAAATTGTGGACT
TTGGTTGTAAAATTAGGTatgactttttttcattttattaatgTTACTAA
CTTTCATCATTGAAGGGTAAACTTACATAGCCTTCTCCTCTATCTCTTAA
AATGGATGTATACCGGGGGTTAATCGTTCTACATTTGCAATTCAGTTata
ccgtaggatcgtctaatctcgacatacgtcttgcaatctcgacaccggat
ctgtaaaataatcaaaacaaaccttgaatgaaattcttggtatcattctt
atcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaatgtgaa
gtgttattacttatatttgaaaagaaaactttaacgatgtagtaatcgct
aaaaactaattagcatactttcaacgaagatgtccaaatcacaacatcac
aacattttgcacgcgaggaattttttagtagacatttttaccgtgaaccg
aaaatgctaaaaagaacccggtttccttttgaatttaatgtgaccgccat
actggcaatcacggcgtgcggcctgttagcgcctagagcgtgtgttttta
tatataaggaaggggaaaccaggctaagcgcgcgaattatttttatcacg
tgacttgaagcgtaaaggtaaaaaagttgtaaaattttaatgatggacac
gataaagttacgaggaagtttgcatgcgtttcgtgtgttgtgtaaaactg
cttataatttggctgtttttttaattgaaaggattgcaatgtttactgaa
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgaacttctagtttga
tggatgaacttgttcgataagaatgataccaagaatttcattcaaggttt
gttttgattattttacagatccggtgtcgagattgcaagacatatgtcga
gattagacgactctacggtaccgggtttatcgttctacatttGCAATTCA
GTTGTGGAAGTACCTGGATCAGTTAAAATAGAGTGTGAAGTACTTCAGCT
TCAGGCTAGGCGgatctttaaaaattgtttggttcccgtcatttcgactt
taaaaagtgggtcggtcggtcggtcggtcgNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatattt
ttttgtacatacATACCATCTTTGTTCATTGAAGGTACCTGCATTGTGAG
CCCCATAATCATCACGCAACATCTTGATTTTAGAAAGTGATGCTTCGAGA
GCGTGGTCTGCTTCCACGAAGGTCCGAATTATGAAATCGGGttaaaaaat
cgggaaatcatggataaactggtttttggTTGACTTTCCGCTGGCGGGCC
CCGCTCGCTATtccgatttgaaaacttgtaaacactgaGAGCGCGCAGAG
GTTGACAATTAGGAATCCAAAAGTggtagtcgcgcggctgaggtcgaaaa
aagtggctagaaaatgattttcgtgatacacctcttagattccacttttt
tcgatggaaactctcgaattagtatatgtagattccaaaatcaaaaagtt
tccacgatattatcgtgcaagtaacgagtaaatggcgatttttcgcgttt
ccaggcaaaattgcaaggcttggaaattcatgatttttggggggtcttca
aattaaaaaaagacctatatcacatagagctcttcaaactgagcaaaaaa
gtgtattacaccaaagtcccaacttctctagatcaaaagttatgggccta
tttgtggtcaaaaaggtgtttaattttgcataaattaatgcagattgtgg
ggacgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNgccattttagttttttgccaaatctagc
gccactgtagcaatcgatctttatttttcgttcgcaaAACATGCGTAGGG
TTGaagcgaagcaaaatttttggacctacctaaggtagtcctttaaatta
acccttgtccgtttgtcgttcgttcgttcgttcgtccgttcgttcgttcg
tctgttgccagcttttctcgggatcggctcattagttttttttaattttt
tgcacaatgatgcaaaatggcaatgcccNcatactaattcgcgagtttcc
gttgttttttttggaatctaaaatatgtatcacgaaatgaaacgtttttc
gacctcagccgcgcgactatggCAAAAGGGGTCCCCAACTCTCCGACTCT
AACTTCAGAGtaaaaatcagggtcggtcggatgacgggaaccaaacaatt
tttagagatccgccgtagctctaaagctcttcTCCAGTATGGAATTCTTG
TAACTAACGCCGCagaggccgatgaaatttacatatgagtttaccgtcgg
ccgcccgcatctctaaaaagcacccgcatgaaaatttcattatcttcaAA
ANaaaactggtttttcggcattttctcgagatttcatcattagttttttc
tgattttttgctcaaagatgcgtattaacaatgcccaaaacatggtctag
tccgattttcgagaaaaaaatttttccggccgaaaatgccggaaatatgc
cggaaatcgccgtttttctggattttcattggacttttccatataattgg
ttgtttttttcattaaaaaagattatcaatagcaatgcccaccatcaagc
atgtttcaattttcaataaaattgatttttgaagccggaactttctaaaa
atcgccggaacagcctaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNtatattttttcatgaaattttgcacactgatgcaaaatgtcaatacc
taaattgtgacggagcccgattttcgaaaaaattcatttccggctgaaaa
tgccggaaatatgccggaaaaactggttttttggcattttctcgagattt
cttcattagtttttttctggttttttgctcaaagatgcgtattaacaatg
cccaaaacatggccgagtccgatttttaagaaccaaatttttccggcgga
aaatgcctgaaatatgccggaaatcgccgtttttctagattttcattaga
ctttaccatgtaattggttgttttttattcaaaaacattatcaatagcaa
ttcccaccatcaagcatgtttcaattttcaataaaatagatttttgaagc
cggaactgttttaaaagtcgccggaacaaccttttttcgccggaaagaca
gtatttcttgaatttctcgagctgtactttatatatttttatgaaatttt
cacacTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTATGAAAttttcacactgatgcaatatgac
aatacctaaaatgtgacggagcctgattttcgaaaaacatttttttccgg
ccgaaaatgccggaaatatgccggaaaaccggttttttgtctttttctcg
aattttcatttttacttttttcttattttttgcagaaagatgcgtattag
caatgctcaaaaaatggctgagttcgatttttgagaaaaaaatttttccg
gttgctggaaatcgccgtttttNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNgtgttgtgtattttcgctaaatgctatatttt
ctgactgattttttttcatttttcttttcgcattgctaactaactttcat
catcaggtaggtccaatctgcatgttgcttgtttattttgagagagaatg
gttagcagaaatggtggataaggtgctgttgggaaaataatgaataatga
ataatgaaatcatgccgcatctatttttgggtaagttcacgacggtaaac
tcatatgtaaatttcatcggccagatcttcggcgtacaactCGAACAATT
CTGGTGTAATTGGTGTAAATTTTACTCCCAAAGATATGgttgaaatagac
cttttttcaaagaggacaccctgttgaataattatgtagtcgaGCAGACa
atgtagacctaactcttcatacaaaagttacgggaaacgcatatttggac
tttgtaccctatgctgcactcaagcactcgggccaaaatcccgcaaaggc
aGGACAAAAGGCAggacaacttttctatttttccttttttttgcaaaagt
tctagtaatgaaaataatgggataatgataattgaatactatccattgat
gatccgcggcactatcgtaaagctagaatcgcttcgcgtactcttcgctt
gagaaaatgattgacagattgaagtttttcatccccgcggtGCGGGCCGC
GCGGGAGCTCAGGCGctctgcgagagttctcggctcaatcctcggaccgc
gctaaaatggtagactgagctgtgatagatcatttcgatggaggttgttg
gaatgtttacaaggctctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcataattattaca
atatgcatgatacagtaattatgcatggctctatcatcgtttttatggct
ggactacataattattcaacaggacgtgcTCTTTGAAAAAGGTCTATATC
AACTATATCAACTATATGCGTACCTAAATTGTTTCAATTGGCATTAATta
ataatgaccccccccccatcaTCTATCAATTTTTGGCTTTTGCCTTGCTA
AATTTGCTTTTGCTCGCTAACACTTgcatcaaattttatgattATTTTGA
TGCATTTGCTTTTCgccatcttgcacccttattgaaaaattcaatCCTGG
TACGAAAGAAGTTTTGCTTGGCGTGAGATTTGTTATTTGGAAAAGTATCT
TCGGTGTAAGTTTTCATGGAATCCATACTGGGCTCTTCTGACTGTCtgaa
acagcatctaataacatgaaaaccagaatatgatatTTCAATCGGAATCA
AAACtgtaaagtgcacttacaaacatcaatttgtcagacctatagcaaaa
ttaataacggcactggtcatcattgacaatcaaacaaacgatattctgtc
aagagccttgtagcGTACACTTGCCTAATTCTGGACGCTTtccaatgttt
ttaatcaaatctcAAGCTATCAAATGAGAAATGTTATCAAATGAGAATCA
GAACTAAATTCAACCTTTCCATACAAAAATATCGCTCCTTACGGACATTC
GTCCCAAATTCCGGACGATGTCTCGTttctacaaaatctaacttcCACTT
GAAATTTTACTTGACAGGATGGACTTAACTCTTAATACATACGGGAagcg
catatttggactttatATGCTGCAggcaagcacttaagctaaagtcccac
aaaagcaggacaaaaatccgttttttttttgcaaaaaaacgctgtacaga
agatctttcaaattcagtacttgaatagagcagtaaaaaatacaactttt
ctatttttccttttttgttgttgcAGAATATAGGGATAATGATAGGGGAA
TGTGCCTTTCtgtaaggaattttataacacttcatggcagattaaaaaga
cgaTCAGCATTTATGGgaaaagatgaaattttcagaaaattctttatTCG
CTATGAGGATTCCAATTTCTGTCAGTATAGACTtaactcgtatatcaaga
ttacgggatttcgagtacgtgcagattttactttcgttttgagtggtttc
acttttgatttcaagccaacatcttagcaacggggtgcttgcccatactt
acaggggtttgtgcaaaaaactaagcgtagaaaattttccaaatccccca
tttcaattaataaaatgaaaaattaaacttttctatgtttcacttttttg
cacctattcttcaaaatgaagatattcaAGAtattaagttcttcttttat
tcaatgattttttacggcactttgttgacaatctaactcttgcagctaat
tcccgctttcttcagtaaattaaagatgaaaaaaaccCTAAGCCactgat
tgaaacaaatatattaagggtgggattttacagctgcccgtcgtgcaagg
cactgaaaggccacaggtgccaaaaagaagggccgtttgaaaagcggcaa
cctcattggtggaaagtTGATAAACAGCTACAAAGGAgtgctgggaagca
atcagtagaagagaccacttttgtttttgttgcagatttctataaaaact
tctctcagggattactttgtcaatgtacatgtacacatttgttgtgtcaa
cttgtcagccttgtattgttgtaaaggaaaagataaaagaggtaagacta
gcttagtttctaatcctgatataggaagTGCTTGGGATTAGAACACAGCC
CattgcggtgcaagtctgtgataGAATCCTTCACATTACCAATCGGCAAA
ATGTTAGTGAGACACAGCAAAAatgggcagttccagaaaaaaaccattac
ccCCTGTCCCTGTGGACAACAGggttttttggaatttcttttcacttgga
aatcctgagaaattttgcaaaaacttACAGAAAATACAGGATTTTCCTAA
TTATTTGGTCATCAGTATTGGAAAATCCATAGATTTTGCTCTTATTTTCT
TGCTATGGAAAATCCAAgagttttccttaaaaattctTGAATGTTACGGA
AATCCAaaggtttttcaaaaagaaaattgctACGGAAAATCCATGTCGTA
CACAGGGGGTAACAGACTATAACTAGAGCCGCTCAATGGAGTCTATGTTT
TGTCTGGAAAGACTAGCTCTAAacctctaaaacagcatctaataacatga
aaaccagaatataattcttcaatgggatcatcaaaagtataaagtgcact
tactaACATCAATTAGTCTGAtcaaatttaaacaaaattaataacagcac
tgtcatcattggCAATCAAACAAACCTGTATACTCActcacaaagtccaa
atattAATAATATATTTCGTATATTTCTTATCTTCAGAGTCAGGGTCAat
taataaaatacaaagaataacatAAATAAACACCACTTGGTCAtattatt
ctttgtattttattaattaattttatcccatcttcgtcgccaAGAATTTT
ATATATGAAGAGTTGGAAGTTGGTGGAAAACAAGTTTGGGTTCCAATAAA
ACCCTGTAACTGTAGACTACAGGgaagcaaaatttcaaattatatcTGGA
GCTTCAAATAATTGTAAACACACAAAAGTGTGTCAGCTCTACAGCTCGCT
CAGGTTTTGAATGAATGAAACAAAATTCAATTTCCTTATGTTGATAGAAA
ACATTCGGCAACATAGAGCCAAATGAAAAAATACAGACGTGTATACGATC
TTCATTCATTTGGAAAGAAGATATTTACACGCCAAAACTGTTTGAGCCAT
CTCTCCAAAACGCAGGGAAAAAAGGCGGGAAAGTCTTGAAAACTTTTCTA
ACTAGTCCCTCTTAACTCCAGCTGCCAAATTGTGATCAAAACCATAATAG
CTAGATAGACCTTATAATATATTGCAATACCATTTTGACATAAATTAATG
AAACTATCATCTCTATCAAtgcttttttttttagaaatttgccCATTGTG
GAAAAATGCATATTAGAATGATGAGATGAtggcaaaatttatttttgagt
taAACTTTTTTGCATGCTTCATCTTGTTTGTTAAATGCAATACTGAACTA
CTGAATGAGGTAATTTACATTACTTTCATGGGAAAGAAATTTGAGAGGTC
TTAAAAGGTCTGTTGAGGATTAATGTGTAAATTTGACTATTTTCAGACCT
TTCGAAAGTTTCTTTTCACAAAAGTTTGTATGTTTTAAGTGCCTTAAGAa
agattgataaaaaattaaaatagctTACCACCCCTAAAATACCAATCTAA
ATCAAACCTTTGgttcttttttaattattttattttattttattttatga
taCACCCTTTTAACtattttctgtttatttttaattttgtttatgtttct
AAGGAATGGATAAACAATGAAGAGAGTCACAAGATTTTGCATCGATCACG
ACGCTCGTTAGAGGAACAATTTTTCGAAGAACAGAACAAAACTTATACAT
GCGACACTTCAAGTTAGTACTATTTCTATGCTCATAAAGTTGGTTCAATG
TTGATTCTCCAAATCTTACACTCTTCACTACAAGATAATATAATTGTTGG
CCTTTTTCAACCAACCATTTACACATCCTAATATTATATGCattttgtta
aaaatctatATTTACTAAACGATTTTAAATGTTACAAAGGCTTTCCATTA
ATATCTGTGGTTTAAGTCATTTCGTTCTAAAATACCATGGAGCTGGCTAT
TATCCTCTTTATGGAAAGAAAGCTTAACTTTTCAGTAGAAAGAAAGAGAT
ACGAcacaaagcaaaaaaaaattattattaaatgaaggaaaatattttta
aaaattattttttgtaaaagtcaGAAGCGTTTGATTTTGAATACGTTTCT
AAGGGACTTTCTTTATAATGATTTAAGatacaataaaaaatttattgagC
TGCTCGCATTGGCACACTATCCTTCCTAATTAAGATATTGCTCTTGTTTT
TTTCAGTTCTTCCACAACCTACTGCAGAATACCCTGTGGTACTTTTTGAA
GGAATAAATTACAACAATTGTTCAGCTAATGGAAAACATCGACGACTTAG
AACTCAAGTCTTTGAAAAATGGTCCGAAAATTTGTCAGGTACATACATTC
TTTACTTTGTTGAATTTATATTGgattgtttcatttgtttgcATGTTGGC
ATGTATGATATTGATTATACGTTTTAAATTTAACTATTAGTTTTAACAGT
tgatatttcaatcaaaatggtaaattttgatgcattgaaactaaaatcta
tccaTGTTATAGACGGTTTGAGTTCATCAGAGTTTGTTAACCGAAGGTTA
ACCATAACTTTTTCGAAATATAGTCGTAAAGTTCAAATTATggagattta
aaaattttctttaattatGCTTTATTCGATGTAAAGTATTGATAGATGTT
TTTATCTGTCAACAAAATTCGACACTTTTAAATCCCTATATTATAAAACC
AAGTGTAGTGATGTGACATAGTGAATTACAAAGTCTCTATTTGAATACCA
GTAAAACGTCTTTCGAGAGTCATAGCACTAAGATTCGGAGCAGATCGTAT
AGTTCTTCTCTCGGATTATACCTAAGTATCTACGTGTTTCAAACATTTCA
GGTCCGAATAGAGCTCGAAAACATAAATGGAATTCTATGTTGATGTTACC
TGGAGCTAATCTCACTTTTCGTGCGTGTTGTCCGAGCGGAAATAACTACC
TATCTACTGTGGACAATTGGAACAACACAGCGAATCTCCATTATTCGGTT
TTAACACAAGATGACTTGAAAGGGCCCACTGGTATTTGGTATGAAAGTAA
GGATCTATTATTTTTGCCAACATATATTTTACCTATACCCCTATTCACGT
TTACTGGAGCAGTCGAATAAAAGCACTTACTTTCCATCAgtgatttccaa
aaattatgCATATTTGGGTAAACAGAATAGCTTACTTCCCGTAGCCGTAC
TTACTTAAAACAGTGTTGCAcgattttattatatttgtcTGATTATTAAA
CacttagaaaaaaactttcattaaTATCATGAATTTAGAATATCAACAGA
ATTATCTACTTTATTGAATACCTTTTTGTGGTGTTTGCTATTTTGACTAG
CCTTACACGTTTTTCAATGTCCTTTACTTATTGGCTTTAAAATCTAAAGT
GATCTTCTATTTTAAGCATTTTGAGAGTATTTCAgtgttatttctaaaaa
attgcaCGTTTTACAGTCAGTCTTAAAATGCTCTTGTAATGTATATtctt
ttcttacaaaaaatcgAGAATTGTACTTTTTTCGATTGTAAGGATGGCTG
CATTGGGTGATGTCTTTTTACATAAGAGTCGATGATCCGGTTGACACAAC
AAGCCTTCCTTCTACTTGTGGTGATAACGGTGCATGTTATTATGGACAAT
GTGGATTGACAGGGAAGTGTGAATGTGCGGATGGCTATTCTGGTGTTGAT
TGTGGAACTGGTGAGCAGATCTGAGATCTTGATCTTTTTATTTATCGTGC
TATGAGAGGGGGTAATAAtattaatgaaatgaaaatgcaTGAGTGAATGT
ATAAACTAAATTTAgataaattgaattttttgtgATATATTATTAACGAA
GTGCGTTCCCCTaatgattttgaaatgaattttatatCGATCGTCTAAAG
AGAGCTTAAATCCTTTCAAAGGTAAATTTTCTCCTTGCCATCATAATGTT
ATAGAACTTCTATCTCTCTTGTCAATTGCAAAACACTGCTTTTAATGAAA
TCTTTTGTAATCTTGATTTCAGCTCCAACCAACGATTCTTACCCAACTGA
GAAGAAACCGTTAGTTTTGTTCAAGGATGTTGATTACACAGGAACCTACT
TACCTGTCAACCCAGACGATTTCAAACGGTTCGCTTACAATCAACGCTCG
GCCCGCGAGATGGAATACAAATCAATGCGCGTTCTTCACAATCGTACGAT
GATGTTCGCACGGAATATTATCTATACACAGGTAAGGAACAAAAAGGTTA
CGTATAAAGTATACAAATTTTTTGATCAGTTGCTGTATTAATAGAATTAA
TCATTAAGGTTGGAAAAAAAAAGGATCATAGCGTTATTTTCAGAACAATT
ATATTGTGGGCGAAATTTTTCTTTGGCGCGTTTAAATCTAAAGCGGACAA
TTGGAAAGTGGATGAATCTTACACATGAGATCAGATCGTcattgttttct
gcacaccacgctaaAGCCTCTAAAGGGATGTGATAAAACAAACGATAAAG
CGGACTTTTTTTCGAGCATCAGAAATCTAGAATCTTCACTCGAACAAAGT
TTCTCCAATCATTCCTTTTTATCtcatttctttcaatttttaagtgtttt
ggcaaaaatctggACTTTTGTAAGAATGGTGAAAATTAATCCTTGTGAAA
TTTATCCATCTTAAGGTACAAAATCGATCAAAGAATTATAAAGTACCTTa
tggaaattatttttcttcgtTTCAGAAATTTACGCCTGGTGATGATATCC
CAGACATGGCGGAATTCATGATCGCCAACCCCAATGTGGCGGATGGGATT
TGGTACAACTACGATCCTCATTACGAAGTAGACTTTCACGTCAAGGTTGA
GATGAGCGGTGCATGTTTCAATTGTAGCGAGACAAATGGTGTTTGTTATA
CTGGATCTTGTTTGTGTAAGACAGGATTCACTGGCGACTATTGCGATGAT
CCAGTGTAATTATGATATATGACATGCTTAAATCCAAACTAAGTCATTTT
CCCTGTCGGAAACACCCAATAAAGCCGagatttttttgctgtttcagTAC
CAAATAAGCGTCAAATTACGGTTTTTTGGTTGTTTCCGATAGTTACAAAA
TGACGTAATTTTATCTTTCCACCACGCATATATATCAAGAGATTTCTGTA
TTTTGATTCATTCTTATTACGAGAATTTATTGAAATGAATGATAGAGTAT
TAATGTGTGTAAAATAAGTAACGAAAAATGGTGTCGGCTATGCAGAAATA
CGACGACCCGGATTGTATTTTTATGATATAAGATATACTCTCTCCTTATG
ATTTTTAAAGTGCTATCCAAGGTGAACATtttctttaccttaaaggaaac
AGTGTTTTTATGTATGAAATGGCCAGCTAAATTTTCTAGATATGATTACT
CGCATCAACCAAATTGCCCAAGGATGTTTCTAAAATCTTCTATGGCGGTG
TTCTGAGCCTGCTTGTAAACTGTGCTGGATAAGTTTTTGtaattgatgat
ttttttatttccactTGTAAATATTTGCAACTTCTAttttgatgatgatt
tttgtgAACATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030662XLOC_030662Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048180-exon-scaffold_141-1491911889:523248..523313TCONS_00048180-exon-scaffold_141-1491911889:523248..523313Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1510915933:523248..523313TCONS_00048180-exon-scaffold_141-1510915933:523248..523313Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1575043694:523248..523313TCONS_00048180-exon-scaffold_141-1575043694:523248..523313Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1491911889:532532..532656TCONS_00048180-exon-scaffold_141-1491911889:532532..532656Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1510915933:532532..532656TCONS_00048180-exon-scaffold_141-1510915933:532532..532656Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1575043694:532532..532656TCONS_00048180-exon-scaffold_141-1575043694:532532..532656Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1491911889:532951..533003TCONS_00048180-exon-scaffold_141-1491911889:532951..533003Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1510915933:532951..533003TCONS_00048180-exon-scaffold_141-1510915933:532951..533003Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1575043694:532951..533003TCONS_00048180-exon-scaffold_141-1575043694:532951..533003Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1491911889:533554..533685TCONS_00048180-exon-scaffold_141-1491911889:533554..533685Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1510915933:533554..533685TCONS_00048180-exon-scaffold_141-1510915933:533554..533685Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1575043694:533554..533685TCONS_00048180-exon-scaffold_141-1575043694:533554..533685Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1491911889:534199..534393TCONS_00048180-exon-scaffold_141-1491911889:534199..534393Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1510915933:534199..534393TCONS_00048180-exon-scaffold_141-1510915933:534199..534393Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1575043694:534199..534393TCONS_00048180-exon-scaffold_141-1575043694:534199..534393Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1491911889:534890..535057TCONS_00048180-exon-scaffold_141-1491911889:534890..535057Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1510915933:534890..535057TCONS_00048180-exon-scaffold_141-1510915933:534890..535057Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1575043694:534890..535057TCONS_00048180-exon-scaffold_141-1575043694:534890..535057Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1491911889:535370..535578TCONS_00048180-exon-scaffold_141-1491911889:535370..535578Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1510915933:535370..535578TCONS_00048180-exon-scaffold_141-1510915933:535370..535578Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1575043694:535370..535578TCONS_00048180-exon-scaffold_141-1575043694:535370..535578Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1491911889:536073..536911TCONS_00048180-exon-scaffold_141-1491911889:536073..536911Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1510915933:536073..536911TCONS_00048180-exon-scaffold_141-1510915933:536073..536911Clytia hemisphaericaexon
TCONS_00048180-exon-scaffold_141-1575043694:536073..536911TCONS_00048180-exon-scaffold_141-1575043694:536073..536911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:523248..536911 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.05499e-09	0	0.395314	0	0	0	0.839515	0	1.97215	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top