|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048221 ID=TCONS_00048221|Name=TCONS_00048221|organism=Clytia hemisphaerica|type=transcript|length=5343bpRun BLAST on NCBI protein sequence of TCONS_00048221-protein >TCONS_00048221-protein ID=TCONS_00048221-protein|Name=TCONS_00048221-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1410bp FSKNSKKTIPKIRPDVPFKSVSYELNKQADPFSGINNLQDVWETNDGECNRun BLAST on NCBI transcript from alignment at scaffold_141:541374..559101- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048221 ID=TCONS_00048221|Name=TCONS_00048221|organism=Clytia hemisphaerica|type=transcript|length=17728bp|location=Sequence derived from alignment at scaffold_141:541374..559101- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_141:541374..559101- >TCONS_00048221 ID=TCONS_00048221|Name=TCONS_00048221|organism=Clytia hemisphaerica|type=CDS|length=84660bp|location=Sequence derived from alignment at scaffold_141:541374..559101- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048221 vs. Swiss-Prot (Human)
Match: PRP8 (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2) HSP 1 Score: 2649 bits (6865), Expect = 0.000e+0 Identity = 1263/1378 (91.65%), Postives = 1329/1378 (96.44%), Query Frame = 3
Query: 102 GINNLQDVWETNDGECNVMIESKYDKIYEKIDXXXXXXXXXXIVDHNIADYMTAKNNIVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVIDLLVLGLRRASEMAGPPQMPNDFLTFQSTEVETAHPIRLYSRYVDRIHVFFRFSADGAKDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRIPRSVSTLRWEDSFVSVYSKDNPNLLFNMCGFECRLLPKIRMTSEEFTHRDGVWNLQNEVTKERTAQCFLRVDNDSMSKFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDAGITHFRSGMSHDEDQVIPNLYRYVQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKWNVSKPSLLADSKDTMDNTTTQKYWVDVQLRWGDYDSHDVERYARAKYLDYTTDNMSIYPSPTGCLVGIDLAYNLHSAFGNWVPGMKPLIQQAMGKIMKANPALYVLRERVRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKLGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNTDRTKVVLKPDKTTITEPHHIWPTLTDEEWVRVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQSKDQSQLXXXXXXXXNIHGDEIIVSTTSNYERSTFSSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGFTYILPKNVLKKFIVISDLRTQIAGYMYGVSPADNPQVKEIRCIVLVPQWGTHQTVHLPSHLPQHEFLKEMEPLGWIHTQPNELPQLSPQDVTTHAKIMSDNPSWDGEKTIVITCSFTPGSCSLTAYKLTPSGFEWGRNNKDTGNNPRGYLPSHYEKVQMLLSDRFLGFFMVPAQGPWNFNFMGVRHSTNMRYELQLANPKEFYHEVHRPSHFLNFSSIEDTE-QAADREDLFA 4232
GINNLQDVWET++GECNVM+ES+++K+YEKIDLTLLNRLLRLIVDHNIADYMTAKNN+VINYKDMNHTNSYGIIRGLQFASFIVQYYGLV+DLLVLGL RASEMAGPPQMPNDFL+FQ E AHPIRL+ RY+DRIH+FFRF+AD A+DLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNR+PRSV+T++WE+SFVSVYSKDNPNLLFNMCGFECR+LPK R + EEFTH+DGVWNLQNEVTKERTAQCFLRVD++SM +FHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFRE+VVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTD GITHFRSGMSH+EDQ+IPNLYRY+QPWESEFIDSQRVWAEYALKRQEA AQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHES+VMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFA+YKWNVS+PSLLADSKD MD+TTTQKYW+D+QLRWGDYDSHD+ERYARAK+LDYTTDNMSIYPSPTG L+ IDLAYNLHSA+GNW PG KPLIQQAM KIMKANPALYVLRER+RK LQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEK GDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVN DR KV+LKPDKTTITEPHHIWPTLTDEEW++VEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPS QRQQIAEIEKQ+K+QSQLTAT T+T N HGDEII STTSNYE TFSSKTEWRVRAISA NLHLRTNHIYVSSDDIKETG+TYILPKNVLKKFI ISDLR QIAGY+YGVSP DNPQVKEIRCIV+VPQWGTHQTVHLP LPQHE+LKEMEPLGWIHTQPNE PQLSPQDVTTHAKIM+DNPSWDGEKTI+ITCSFTPGSC+LTAYKLTPSG+EWGR N D GNNP+GYLPSHYE+VQMLLSDRFLGFFMVPAQ WN+NFMGVRH NM+YELQLANPKEFYHEVHRPSHFLNF+ +++ E +ADREDL+A
Sbjct: 958 GINNLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATEAAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335 The following BLAST results are available for this feature:
BLAST of TCONS_00048221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.