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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048181 ID=TCONS_00048181|Name=TCONS_00048181|organism=Clytia hemisphaerica|type=transcript|length=715bp
CTGAATTCAAATTCACTTTAGTCTGTTGTCCGAAATGAAGAACCTGTTTT
GCCTAGCATGGATCTGAGAATAAATGGAGACAAAATAATTGAATGAAGCC
GAAATTTATTTATAAAGTGAAATAACATAAAAATCGATGCATTGCTCTGG
GGTAACATTAGGGATGTGCTGTGTACCTTAATTCTAATCAAAGAAGTGCA
CCATAATATTCTGATCGGAACTCGGAAATTAAAGAGGCGATGATAAaaga
aaagttacaaaaaagCTTCACTGTGGACCGAGGCCGAGACCGACCACGTT
ATTAGGTTTGTTTATAATGGGTAAATTAAGTGATGAAACCACCGGCGGTG
CACAGCACATCCCAAATGATCAGTCCCTGGGTTAAAAAAACCTGCCATCA
GGGAAAAATCTAGGATTAACTAAAGGTTTGAGTTGCGATTGGTTGATGAC
ATCGACCCGTCGTGTTCACCTGAAAGAGATAGAAAAACACATGTTAGGTG
GGTAGcggtagactggagtcgtttataatgcatgtaattgcccccgcagg
agcgtagcgacgaggaggctctcatagtttcacgcatagatattggactg
gaatctcaaagttttgcgaattgttttgttgtcgcgtaagcatatccgta
gttagtctcttccgtaaatgttcggtttttttccgggacggtagtatttc
atattacgttatatg Run BLAST on NCBI transcript from alignment at scaffold_141:597204..598051+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048181 ID=TCONS_00048181|Name=TCONS_00048181|organism=Clytia hemisphaerica|type=transcript|length=848bp|location=Sequence derived from alignment at scaffold_141:597204..598051+ (Clytia hemisphaerica)
CTGAATTCAAATTCACTTTAGTCTGTTGTCCGAAATGAAGAACCTGTTTT
GCCTAGCATGGATCTGAGAATAAATGGAGACAAAATAATTGAATGAAGCC
GAAATTTATTTATAAAGTGAAATAACATAAAAATCGATGCATTGCTCTGG
GGTAACATTAGGGATGTGCTGTGTACCTTAATTCTAATCAAAGAAGTGCA
CCATAATATTCTGATCGGAACTCGGAAATTAAAGAGGCCCTAAGGTCATT
AGACAGTNACTGTATGGGCTGAGCAGTCAGGACAACGGCACTCGGAAATT
AAGGAGGCCCTAAGGTCATTAGACATGGGATAATTTTATGCCGAAGGTGA
ACCAACATCCCTCGAGGAGGCGATGATAAaagaaaagttacaaaaaagCT
TCACTGTGGACCGAGGCCGAGACCGACCACGTTATTAGGTTTGTTTATAA
TGGGTAAATTAAGTGATGAAACCACCGGCGGTGCACAGCACATCCCAAAT
GATCAGTCCCTGGGTTAAAAAAACCTGCCATCAGGGAAAAATCTAGGATT
AACTAAAGGTTTGAGTTGCGATTGGTTGATGACATCGACCCGTCGTGTTC
ACCTGAAAGAGATAGAAAAACACATGTTAGGTGGGTAGcggtagactgga
gtcgtttataatgcatgtaattgcccccgcaggagcgtagcgacgaggag
gctctcatagtttcacgcatagatattggactggaatctcaaagttttgc
gaattgttttgttgtcgcgtaagcatatccgtagttagtctcttccgtaa
atgttcggtttttttccgggacggtagtatttcatattacgttatatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048181-exon-scaffold_141-1491911889:597204..597439 | TCONS_00048181-exon-scaffold_141-1491911889:597204..597439 | Clytia hemisphaerica | exon |
| TCONS_00048181-exon-scaffold_141-1510915933:597204..597439 | TCONS_00048181-exon-scaffold_141-1510915933:597204..597439 | Clytia hemisphaerica | exon |
| TCONS_00048181-exon-scaffold_141-1575043694:597204..597439 | TCONS_00048181-exon-scaffold_141-1575043694:597204..597439 | Clytia hemisphaerica | exon |
| TCONS_00048181-exon-scaffold_141-1491911889:597573..598051 | TCONS_00048181-exon-scaffold_141-1491911889:597573..598051 | Clytia hemisphaerica | exon |
| TCONS_00048181-exon-scaffold_141-1510915933:597573..598051 | TCONS_00048181-exon-scaffold_141-1510915933:597573..598051 | Clytia hemisphaerica | exon |
| TCONS_00048181-exon-scaffold_141-1575043694:597573..598051 | TCONS_00048181-exon-scaffold_141-1575043694:597573..598051 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:597204..598051 + |
Blast
The following BLAST results are available for this feature:
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