TCONS_00048182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048182
Unique NameTCONS_00048182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048182 ID=TCONS_00048182|Name=TCONS_00048182|organism=Clytia hemisphaerica|type=transcript|length=1448bp
GGGAAGAGTGTCTAGTTTTAGAGCTATTGTTTTTGAAGTGAAAAATAAGT
TCTGAAGcaataaaaatacaaattcataTAAGCTATCAACGTTTCCTTTG
TAATCACATTCAGGATGTGTTGACAAGAACACAAGTTGTCCACGATGGGC
TCCATCATATTGCAAAACCAATGCATACGTGAAAGCNCAAGAACACAAGT
TGTCCACGATGGGCTCCATCATATTGCAAAACCAATGCATACGTGAAAGC
AAACTGCAAGAAAAGTTGTAACATGTGTGGCCCAAGTACCCCTGCTCCAC
CAACAAGTGCACCAGGAACCTACCCACCCCAAGGATCATGTGGACGTCCA
CAAGTTGCAATGTCCAGAGTTGTCGGAGGACAAAACGCAAAAGCTCATTC
ATGGCCATGGCAAATCGGACTTCACCGCAACGGTGGATTTATGTGTGGAG
GTTCAATCATCAACAGCCGATGGGTTGTTACTGCTGCTCATTGTGTACAT
CGAAGAAGTGCGAGTGACTTCAAAGTCAAATTAGGAGACCACGATAGACG
AAGAAACGAAGGTGAACAATTCATCcaagtttcaaaaattatcaCTCATC
AAGGTTACGGAAGCTTGAACAATGATATTGCTTTGTTACAATTGGCTACT
CCAgcaaaattcagcaaaaatgttCAACCTGTCTGTTTACCAAGCCAAGG
ACAATACCCAAAAGTTGGCAGCAAATGTTACATCACTGGATGGGGAAAAA
TTAGACATCCAGGAGGTTCACACACCATCCTTCAACAACTTGCTTTGACC
ATCCAAGATAAGAACACCTGTTCCAGAAAGAACAGTAAATATGCTCGCAT
CACTGACGCTATGCTTTGTGCTGCTAACACTGATGTATCTGCCAATCAAT
CTGGCTGCCATGGTGATTCAGGTGGTCCATTCGTTTGTCAAAATAGCGAT
GGTTCATGGGCATTACATGGAGCTGTCAGCTGGGGATCACCAAGATGTGA
CATCAAAGATGCTTTCACTGTTTTCGCCAGAGTCGGATATTTCAGAAACT
GGATCGAACAAAACATGAAATAaattcgaccaatcaaaattaACCATTAG
TTTTTACCCTTAAACTGTAGATCAATAAAATAtcgatgaaaaaaattgaa
ttttcttttgttatgaatttgccaaaaaattaaaCTCATCTCCTTTACTG
AGTTTAAAATCTAATTCAATCGTTTGCATAAGTTTAAAAAATTACCACCG
CAATCAGCGGCAACAGTTACCCCAGATTGATTCCTTAGCATTGTCCTCTT
CTCTTTCAAAAATGATTGAGGGTGTCAAGAAAGATTATtagctttgtaat
ttttttcaagacGAGGCAAAGGTCGTACatgatgaaaaatatgaaaatag
taTATAATACAACATTTTCAGCTGTAGCGACTGTTGCTTCAACAGTAA
Run BLAST on NCBI

protein sequence of TCONS_00048182-protein

>TCONS_00048182-protein ID=TCONS_00048182-protein|Name=TCONS_00048182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MCGPSTPAPPTSAPGTYPPQGSCGRPQVAMSRVVGGQNAKAHSWPWQIGL
HRNGGFMCGGSIINSRWVVTAAHCVHRRSASDFKVKLGDHDRRRNEGEQF
IQVSKIITHQGYGSLNNDIALLQLATPAKFSKNVQPVCLPSQGQYPKVGS
KCYITGWGKIRHPGGSHTILQQLALTIQDKNTCSRKNSKYARITDAMLCA
ANTDVSANQSGCHGDSGGPFVCQNSDGSWALHGAVSWGSPRCDIKDAFTV
FARVGYFRNWIEQNMK
Run BLAST on NCBI

transcript from alignment at scaffold_141:599027..601457+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048182 ID=TCONS_00048182|Name=TCONS_00048182|organism=Clytia hemisphaerica|type=transcript|length=2431bp|location=Sequence derived from alignment at scaffold_141:599027..601457+ (Clytia hemisphaerica)
GGGAAGAGTGTCTAGTTTTAGAGCTATTGTTTTTGAAGTGAAAAATAAGT
TCTGAAGcaataaaaatacaaattcataTAAGCTATCAACGTTTCCTTTG
TAATCACATTCAGGATGTGTTGACAAGAACACAAGTTGTCCACGATGGGC
TCCATCATATTGCAAAACCAATGCATACGTGAAAGCNCAAGAACACAAGT
TGTCCACGATGGGCTCCATCATATTGCAAAACCAATGCATACGTGAAAGC
AAACTGCAAGAAAAGTTGTAACATGTGTGGCCCAAGTACCCCTGCTCCAC
CAACAAGTGCACCAGGAACCTACCCACCCCAAGGATCATGTGGACGTCCA
CAAGTTGCAATGTCCAGAGTTGTCGGAGGACAAAACGCAAAAGCTCATTC
ATGGCCATGGCAAATCGGACTTCACCGCAACGGTGGATTTATGTGTGGAG
GTTCAATCATCAACAGCCGATGGGTTGTTACTGCTGCTCATTGTGTACAT
CGAAGAAGTGCGAGTGACTTCAAAGTCAAATTAGGTAAGTAATGGTTACG
TATTGGTGTTTCATAGGCCTCCTAAGTTCTAGGGTcacttgaaaaataaa
caagttaaagttcaatttctaaaatttcttttaagtGACCCACCCGAGAA
CtctcaacaaaattttttgtacATTTAATTAGTATATTTTAGAATAATGC
GcagaaaataataaataaagtgATGGGTAATAACTAAGTGTTCCTGTTTT
CAATTGCTATCTTTTCTCCTGTTTCTATAAAAATAGCTAATACTATTGCC
TTGATACTCGACTCAATGTAAAAGATTACAGAAAACTGTCTAAAGATCCT
AGATCGCTAGGCTATCAATGAAGAATTCGACTCGCCTCTCTAAACTAAAA
ATATACTTATTTCTTTTCTGCAGGAGACCACGATAGACGAAGAAACGAAG
GTGAACAATTCATCcaagtttcaaaaattatcaCTCATCAAGGTTACGGA
AGCTTGAACAATGATATTGCTTTGTTACAATTGGCTACTCCAgcaaaatt
cagcaaaaatgttCAACCTGTCTGTTTACCAAGCCAAGGACAATACCCAA
AAGTTGGCAGCAAATGTTACATCACTGGTAAGATACAGAGTTATTCTTTT
AAGTCTCTGGTCAGTTTGCGTGATGACGTGATTGGGAAATTCTTGTGTGA
ATGCATGGCTCCATAAACGTGAGCGTGATGAAGAAAAACGGATTATTTTA
TGCTTGATGGAaagtttttgcgattttttccTTATCGTGTTGAGAGCAGG
CATGGTGGTGTGGTAGTAACGATGGGTGTCACTGGGGGaccttaaatcaa
tttttttgaatcaATTTCTCTAGTCCAAAATGATCGCCCATATAAGGATG
GAAAATAGCATGTTTCAATTGGCTACCACTCCCGACCCCGTGCCTTCCAG
GCTAAAACTTCCGTTACTGATGGAAGCCTGAGAACTATCTGGTGCTCTCA
GTATAAGCATAAAGTATTAACAAACTGATAATACGCGGGAAACGAGGTTG
ATTGGCTAGTGCAATTTTCTGTTCTGAAATTCGTTGGCGATTCATActgg
attttttattatttgaaactttattgGGTATATTTTCACTGGGGATTTAT
TTTGTGTCTGTAACTAGTAAGTTCTATTATGATAGAGTTTTTTTGCTAAC
TGCTTACTGGTTTCTTTTTAGGATGGGGAAAAATTAGACATCCAGGAGGT
TCACACACCATCCTTCAACAACTTGCTTTGACCATCCAAGATAAGAACAC
CTGTTCCAGAAAGAACAGTAAATATGCTCGCATCACTGACGCTATGCTTT
GTGCTGCTAACACTGATGTATCTGCCAATCAATCTGGCTGCCATGGTGAT
TCAGGTGGTCCATTCGTTTGTCAAAATAGCGATGGTTCATGGGCATTACA
TGGAGCTGTCAGCTGGGGATCACCAAGATGTGACATCAAAGATGCTTTCA
CTGTTTTCGCCAGAGTCGGATATTTCAGAAACTGGATCGAACAAAACATG
AAATAaattcgaccaatcaaaattaACCATTAGTTTTTACCCTTAAACTG
TAGATCAATAAAATAtcgatgaaaaaaattgaattttcttttgttatgaa
tttgccaaaaaattaaaCTCATCTCCTTTACTGAGTTTAAAATCTAATTC
AATCGTTTGCATAAGTTTAAAAAATTACCACCGCAATCAGCGGCAACAGT
TACCCCAGATTGATTCCTTAGCATTGTCCTCTTCTCTTTCAAAAATGATT
GAGGGTGTCAAGAAAGATTATtagctttgtaatttttttcaagacGAGGC
AAAGGTCGTACatgatgaaaaatatgaaaatagtaTATAATACAACATTT
TCAGCTGTAGCGACTGTTGCTTCAACAGTAA

Coding sequence (CDS) from alignment at scaffold_141:599027..601457+

>TCONS_00048182 ID=TCONS_00048182|Name=TCONS_00048182|organism=Clytia hemisphaerica|type=CDS|length=2403bp|location=Sequence derived from alignment at scaffold_141:599027..601457+ (Clytia hemisphaerica)
ATGTGTGGCCCAAGTACCCCTGCTCCACCAACAAGTGCACCAGGAACCTA
CCCACCCCAAGGATCATGTGGACGTCCACAAGTTGCAATGTCCAGAGTTG
TCGGAGGACAAAACGCAAAAGCTCATTCATGGCCATGGCAAATCGGACTT
CACCGCAACGGTGGATTTATGTGTGGAGGTTCAATCATCAACAGCCGATG
GGTTGTTACTGCTGCTCATTGTGTACATCGAAGAAGTGCGAGTGACTTCA
AAGTCAAATTAGGAGACCACGATAGACGAAGAAACGAAGGTGAACAATTC
ATCcaagtttcaaaaattatcaCTCATCAAGGTTACGGAAGCTTGAACAA
TGATATTGCTTTGTTACAATTGGCTACTCCAgcaaaattcagcaaaaatg
ttCAACCTGTCTGTTTACCAAGCCAAGGACAATACCCAAAAGTTGGCAGC
AAATGTTACATCACTGGATGGGGAAAAATTAGACATCCAGGAGGTTCACA
CACCATCCTTCAACAACTTGCTTTGACCATCCAAGATAAGAACACCTGTT
CCAGAAAGAACAGTAAATATGCTCGCATCACTGACGCTATGCTTTGTGCT
GCTAACACTGATGTATCTGCCAATCAATCTGGCTGCCATGGTGATTCAGG
TGGTCCATTCGTTTGTCAAAATAGCGATGGTTCATGGGCATTACATGGAG
CTGTCAGCTGGGGATCACCAAGATGTGACATCAAAGATGCTTTCACTGTT
TTCGCCAGAGTCGGATATTTCAGAAACTGGATCGAACAAAACATGAAATA
aATGTGTGGCCCAAGTACCCCTGCTCCACCAACAAGTGCACCAGGAACCT
ACCCACCCCAAGGATCATGTGGACGTCCACAAGTTGCAATGTCCAGAGTT
GTCGGAGGACAAAACGCAAAAGCTCATTCATGGCCATGGCAAATCGGACT
TCACCGCAACGGTGGATTTATGTGTGGAGGTTCAATCATCAACAGCCGAT
GGGTTGTTACTGCTGCTCATTGTGTACATCGAAGAAGTGCGAGTGACTTC
AAAGTCAAATTAGGAGACCACGATAGACGAAGAAACGAAGGTGAACAATT
CATCcaagtttcaaaaattatcaCTCATCAAGGTTACGGAAGCTTGAACA
ATGATATTGCTTTGTTACAATTGGCTACTCCAgcaaaattcagcaaaaat
gttCAACCTGTCTGTTTACCAAGCCAAGGACAATACCCAAAAGTTGGCAG
CAAATGTTACATCACTGGATGGGGAAAAATTAGACATCCAGGAGGTTCAC
ACACCATCCTTCAACAACTTGCTTTGACCATCCAAGATAAGAACACCTGT
TCCAGAAAGAACAGTAAATATGCTCGCATCACTGACGCTATGCTTTGTGC
TGCTAACACTGATGTATCTGCCAATCAATCTGGCTGCCATGGTGATTCAG
GTGGTCCATTCGTTTGTCAAAATAGCGATGGTTCATGGGCATTACATGGA
GCTGTCAGCTGGGGATCACCAAGATGTGACATCAAAGATGCTTTCACTGT
TTTCGCCAGAGTCGGATATTTCAGAAACTGGATCGAACAAAACATGAAAT
AaATGTGTGGCCCAAGTACCCCTGCTCCACCAACAAGTGCACCAGGAACC
TACCCACCCCAAGGATCATGTGGACGTCCACAAGTTGCAATGTCCAGAGT
TGTCGGAGGACAAAACGCAAAAGCTCATTCATGGCCATGGCAAATCGGAC
TTCACCGCAACGGTGGATTTATGTGTGGAGGTTCAATCATCAACAGCCGA
TGGGTTGTTACTGCTGCTCATTGTGTACATCGAAGAAGTGCGAGTGACTT
CAAAGTCAAATTAGGAGACCACGATAGACGAAGAAACGAAGGTGAACAAT
TCATCcaagtttcaaaaattatcaCTCATCAAGGTTACGGAAGCTTGAAC
AATGATATTGCTTTGTTACAATTGGCTACTCCAgcaaaattcagcaaaaa
tgttCAACCTGTCTGTTTACCAAGCCAAGGACAATACCCAAAAGTTGGCA
GCAAATGTTACATCACTGGATGGGGAAAAATTAGACATCCAGGAGGTTCA
CACACCATCCTTCAACAACTTGCTTTGACCATCCAAGATAAGAACACCTG
TTCCAGAAAGAACAGTAAATATGCTCGCATCACTGACGCTATGCTTTGTG
CTGCTAACACTGATGTATCTGCCAATCAATCTGGCTGCCATGGTGATTCA
GGTGGTCCATTCGTTTGTCAAAATAGCGATGGTTCATGGGCATTACATGG
AGCTGTCAGCTGGGGATCACCAAGATGTGACATCAAAGATGCTTTCACTG
TTTTCGCCAGAGTCGGATATTTCAGAAACTGGATCGAACAAAACATGAAA
TAa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030664XLOC_030664Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048182-proteinTCONS_00048182-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048182-exon-scaffold_141-1491911889:599027..599560TCONS_00048182-exon-scaffold_141-1491911889:599027..599560Clytia hemisphaericaexon
TCONS_00048182-exon-scaffold_141-1510915933:599027..599560TCONS_00048182-exon-scaffold_141-1510915933:599027..599560Clytia hemisphaericaexon
TCONS_00048182-exon-scaffold_141-1575043694:599027..599560TCONS_00048182-exon-scaffold_141-1575043694:599027..599560Clytia hemisphaericaexon
TCONS_00048182-exon-scaffold_141-1491911889:599950..600153TCONS_00048182-exon-scaffold_141-1491911889:599950..600153Clytia hemisphaericaexon
TCONS_00048182-exon-scaffold_141-1510915933:599950..600153TCONS_00048182-exon-scaffold_141-1510915933:599950..600153Clytia hemisphaericaexon
TCONS_00048182-exon-scaffold_141-1575043694:599950..600153TCONS_00048182-exon-scaffold_141-1575043694:599950..600153Clytia hemisphaericaexon
TCONS_00048182-exon-scaffold_141-1491911889:600748..601457TCONS_00048182-exon-scaffold_141-1491911889:600748..601457Clytia hemisphaericaexon
TCONS_00048182-exon-scaffold_141-1510915933:600748..601457TCONS_00048182-exon-scaffold_141-1510915933:600748..601457Clytia hemisphaericaexon
TCONS_00048182-exon-scaffold_141-1575043694:600748..601457TCONS_00048182-exon-scaffold_141-1575043694:600748..601457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:599027..601457 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.154459	0.0610278	0.177566	0.191774	0.691309	0.62606	0.0927051	1.02951	475.257	509.299	344.232	989.698	341.233	426.96	2714.58	2401.76	1602.99	1856.16	1496.38	1777.28	2126.47	2259.08	0.157053	0.0838054	0.338297	1.24557
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR033116TRYPSIN_SER
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
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BLAST of TCONS_00048182 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 7.189e-52
Identity = 108/251 (43.03%), Postives = 146/251 (58.17%), Query Frame = 3 
Query:  339 CGRPQV--AMS---RVVGGQNAKAHSWPWQIGLHRNGGF-MCGGSIINSRWVVTAAHCVHRRSASDFKVKLGDHDRRRN-EGEQFIQVSKIITHQGYGS--LNNDIALLQLATPAKFSKNVQPVCLPSQGQYPKVGSKCYITGWGKIRHPGG-SHTILQQLALTIQDKNTCSRKNSKYARITDAMLCAANTDVSANQSGCHGDSGGPFVCQNSDGSWALHGAVSWGSPRCDIKDAFTVFARVGYFRNWIEQ 1061
            CG P +  A+S   R+V G+NA   SWPWQ+ L  + GF  CGGS+I+  WVVTAAHC    S     V LG++DR  N E  Q + VS+ ITH  + S  +NND+ LL+LA+PA+++  + PVCL S  +    G  C  TGWG++   G  +   LQQ+AL +   N C  +    + ITD+M+CA      A  S C GDSGGP VCQ  + +W L G VSWG+  C+++ A  V+ RV  F  WI Q
Sbjct:   19 CGIPAIKPALSFSQRIVNGENAVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHC--NVSPGRHFVVLGEYDRSSNAEPLQVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQC--RQYWGSSITDSMICAGG----AGASSCQGDSGGPLVCQKGN-TWVLIGIVSWGTKNCNVR-APAVYTRVSKFSTWINQ 259
The following BLAST results are available for this feature:
BLAST of TCONS_00048182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRL7.189e-5243.03Chymotrypsin-like protease CTRL-1 OS=Homo sapiens ... [more]
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