TCONS_00048450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048450
Unique NameTCONS_00048450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048450 ID=TCONS_00048450|Name=TCONS_00048450|organism=Clytia hemisphaerica|type=transcript|length=466bp
TGCTTTGCTGAAATTATCCTACCAAACAGTACCAATATCATTGTTGGTAC
TATATATCGCCATCCAAAAATGGTTGGCTTCAATCAAGATTTTCTAAAAC
CCCTGCTTGGTAAAATTTCTTCTGAGAAAAAGCAACTCCTCCTTCTTGGA
GACTTCAATCTTAATCTTTTGAAATACAAGGATGATTCAGAAATAATGTC
CTTCATGGATATCCTCGATTCTAATCTTATACTTCCACAGATCCTTTTAC
CAACAAGAATAACTGAGGACTCAAGGACTCTCATTGATAATATTATTTCT
AGCCCATCTGATAATGGAACTGTATCTGGCAACATATGCTTTTCCATTTC
AGATCATCTCCCCCAGTTTTCTCTTTCCATCATTTGAAGGTAAGTTTCCC
GGTGAAGATAATACTTTTTTTCAGCAAGACTGGTCTCGTTTCAACCGAGA
AGAATTTATTCTGGAT
Run BLAST on NCBI

protein sequence of TCONS_00048450-protein

>TCONS_00048450-protein ID=TCONS_00048450-protein|Name=TCONS_00048450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
CFAEIILPNSTNIIVGTIYRHPKMVGFNQDFLKPLLGKISSEKKQLLLLG
DFNLNLLKYKDDSEIMSFMDILDSNLILPQILLPTRITEDSRTLIDNIIS
SPSDNGTVSGNICFSISDHLPQFSLSII
Run BLAST on NCBI

transcript from alignment at scaffold_142:14067..14532

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048450 ID=TCONS_00048450|Name=TCONS_00048450|organism=Clytia hemisphaerica|type=transcript|length=466bp|location=Sequence derived from alignment at scaffold_142:14067..14532 (Clytia hemisphaerica)
ATCCAGAATAAATTCTTCTCGGTTGAAACGAGACCAGTCTTGCTGAAAAA
AAGTATTATCTTCACCGGGAAACTTACCTTCAAATGATGGAAAGAGAAAA
CTGGGGGAGATGATCTGAAATGGAAAAGCATATGTTGCCAGATACAGTTC
CATTATCAGATGGGCTAGAAATAATATTATCAATGAGAGTCCTTGAGTCC
TCAGTTATTCTTGTTGGTAAAAGGATCTGTGGAAGTATAAGATTAGAATC
GAGGATATCCATGAAGGACATTATTTCTGAATCATCCTTGTATTTCAAAA
GATTAAGATTGAAGTCTCCAAGAAGGAGGAGTTGCTTTTTCTCAGAAGAA
ATTTTACCAAGCAGGGGTTTTAGAAAATCTTGATTGAAGCCAACCATTTT
TGGATGGCGATATATAGTACCAACAATGATATTGGTACTGTTTGGTAGGA
TAATTTCAGCAAAGCA

Coding sequence (CDS) from alignment at scaffold_142:14067..14532

>TCONS_00048450 ID=TCONS_00048450|Name=TCONS_00048450|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_142:14067..14532 (Clytia hemisphaerica)
TCAAATGATGGAAAGAGAAAACTGGGGGAGATGATCTGAAATGGAAAAGC
ATATGTTGCCAGATACAGTTCCATTATCAGATGGGCTAGAAATAATATTA
TCAATGAGAGTCCTTGAGTCCTCAGTTATTCTTGTTGGTAAAAGGATCTG
TGGAAGTATAAGATTAGAATCGAGGATATCCATGAAGGACATTATTTCTG
AATCATCCTTGTATTTCAAAAGATTAAGATTGAAGTCTCCAAGAAGGAGG
AGTTGCTTTTTCTCAGAAGAAATTTTACCAAGCAGGGGTTTTAGAAAATC
TTGATTGAAGCCAACCATTTTTGGATGGCGATATATAGTACCAACAATGA
TATTGGTACTGTTTGGTAGGATAATTTCAGCAAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030804XLOC_030804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048450-exon-scaffold_142-1491911889:14067..14532TCONS_00048450-exon-scaffold_142-1491911889:14067..14532Clytia hemisphaericaexon
TCONS_00048450-exon-scaffold_142-1510915933:14067..14532TCONS_00048450-exon-scaffold_142-1510915933:14067..14532Clytia hemisphaericaexon
TCONS_00048450-exon-scaffold_142-1575043694:14067..14532TCONS_00048450-exon-scaffold_142-1575043694:14067..14532Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048450-proteinTCONS_00048450-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:14067..14532 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.32711	5.88597	6.25526	8.64184	7.70855	5.83697	6.83536	10.2696	2.55923	4.59014	3.60289	2.9732	2.34494	3.62313	1.13452	1.84089	1.94253	2.00647	1.68193	2.26209	2.88765	4.37634	1.5828	2.54003	5.26566	6.57767	3.08682	3.21223	1.68542	1.56107
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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