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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048263 ID=TCONS_00048263|Name=TCONS_00048263|organism=Clytia hemisphaerica|type=transcript|length=2557bpRun BLAST on NCBI protein sequence of TCONS_00048263-protein >TCONS_00048263-protein ID=TCONS_00048263-protein|Name=TCONS_00048263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=765bp MYRCGIRSSRSLQSNSHARSLLSKNKNGQVLLKHANSTKTSGGSSGLYIGRun BLAST on NCBI transcript from alignment at scaffold_142:30510..35434+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048263 ID=TCONS_00048263|Name=TCONS_00048263|organism=Clytia hemisphaerica|type=transcript|length=4925bp|location=Sequence derived from alignment at scaffold_142:30510..35434+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:30510..35434+ >TCONS_00048263 ID=TCONS_00048263|Name=TCONS_00048263|organism=Clytia hemisphaerica|type=CDS|length=22980bp|location=Sequence derived from alignment at scaffold_142:30510..35434+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00048263 vs. Swiss-Prot (Human)
Match: MIC60 (MICOS complex subunit MIC60 OS=Homo sapiens GN=IMMT PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.207e-22 Identity = 115/449 (25.61%), Postives = 217/449 (48.33%), Query Frame = 1
Query: 1048 VDVAKDSELALLQEIESLKTLVEKVRENDTSQVADDAEKVALERK-DSLLVAL----SAIESVQKDFDFLLKYQEYVKDAPTELQKDLKSFASDMLTLIQDKEMVISELP-------YNQAILMLALKRQQLYSDVGEQAKGLAEEEVDRXXXXXXXXXXXXASQAMKVELKRVEDEKNXXXXXXXXXXXXNYEREILSQLKRQAMAHNEHLAEELAGQAKTLDEKHQTEQQAKLDEQKEIYYRELEKK------------VKSISAIQAKISDIVDVESRQRNAQELWIASQALNGTLGVTTLNGRTRTLMPEMIAILQLGERDTTLAEIVDSFPEQATLFGVVPEKDLINRFKHVKDACKRVAAVQDG-DSIVKYFMSYVKSMFVISRWYLTDVDQAVDMDKLTSYEVLAKAEHYIREGDLETATKLMSQLKGVARKLSSDWLNEAR 2319
VD A D+ L +E+E +K+++E ++ + + A E K +++V L +++ Q + + +Y E V A + +++L S ++L K M +S+L N I + QL ++ EQ K ++ + L++QK E ++ A+ L+ E E++ K++E+ + E E+ +QL+RQA AH +HL + L Q + L + + KL EQ E+ +R L ++ + I+ + E R A +LW++ +AL ++ ++ T L + AI + + + P ++ GV E+ L RF V+ +RVA + + +S+ +YF+SY++S+ + L + D + ++++L+ A + I GDLE A K ++QLKG +R+++ DWL EAR
Sbjct: 288 VDEAADALLKAKEELEKMKSVIENAKKKEVA--GAKPHITAAEGKLHNMIVDLDNVVKKVQAAQSEAKVVSQYHELVVQARDDFKRELDSITPEVLPGW--KGMSVSDLADKLSTDDLNSLIAHAHRRIDQLNRELAEQ-KATEKQHITLALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKIEEVRDAMENEMRTQLRRQAAAHTDHLRDVLRVQEQELKSEFEQNLSEKLSEQ-ELQFRRLSQEQVDNFTLDINTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTSSAETPTIPLGSAVEAIKANCSDNEFTQALTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYLQSLLLFPPQQLKPPPELCPED-INTFKLLSYASYCIEHGDLELAAKFVNQLKGESRRVAQDWLKEAR 729 The following BLAST results are available for this feature:
BLAST of TCONS_00048263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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