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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048267 ID=TCONS_00048267|Name=TCONS_00048267|organism=Clytia hemisphaerica|type=transcript|length=1486bp
AAAAGGCGGAACGATTGCCAAGTGGGTTCCCTTAAACATGACACAAGTGT
TTGTTAAAGgtttttgaaaagttacaaaatatttgaagattcACTAACAA
TGATGAACATCTACATCTTGAAATCTGTGTTGAGTTTTGCTGCTTCGTTA
CTGCATTGTGTCGGTTTCTGGGCGTTATGGAACGTCAAACAATCGAACCC
GTACATGATCACGCAACGGTTATACCTACTACACTTAAGCCTGGCCGAGA
ATTTTCATTCGTTCTTCCTTGGTATTTGGTATATCAATACTTTATTTGAA
AACCCAAGATGGGCGAATTATGCCTTCATCTGTGCGGGCGGTGGGGCGTT
TCTTTGGTATTTATCAATTATGATCATGCTGACAATTGACCGCTTCCTCA
TGGTTTATTTAGATGTCCGATATTTAGTTTACTGGAATGTCCGAAAAACG
AAGCTGGTTTTGGGGATTTGTCTGGGTGTTTCGGTAATCGCGAATGTCAT
TTTCTTGGTATCGCTACCAACGTTCAACCAATCGCTGAAAGTCTTTTCTG
TTTATCTTTGGTTTCCCGTCGATAATGGCTTCATTTTCATCGCCGTCGTT
ACATACGCGTATATTTTCAAACGCGTTTACCAACCGACCAATAAGAACGA
AACAAAAGCGCGCGCTTACACAATCGACTCAACAAACGCATCTTCCGATC
ACGTGATTCATCATGACGTCATCGCTGATGACCAACAACGACGTTTAGCC
TCGAGAACAATGACTCAAAAGTCATCACATAAATTCCCAATGAAAACTTT
TATGATTCCGCTTCTCTTGATCACGACTTTCATCCTTTTTATTGGATTCC
CTGATAATACATACTTTTGGTATTTCTGTCTAGACAAAGAGGTGCCACAA
GCCTTGGAGACTCTCTTCTATATTTTTTATCCATCCGGTATAATGTCGGA
TGCGATAATTTACGTCTTGTTTGCTAAAGACGTTCGAACGTACCTTTTCA
AGAAGTTGGGCCTTGTGAAACAGAGAGCCAGAGGTGATAGTCAAGCTACG
GTAACCACCTCAGATTACAACGTTTGACTTATCTGAATAACAAGAAGTTA
ATGTGTATATAGTAGTAGGGTACTAAGTATAGGGTCCCGAATAtacgtca
tttttgaaaatattttcagctattaCAAGCTGCATTGCTCCAAAAGCCTG
GTTTAAGCttataatgggctcttccagaaaaaatccgttcatggggagtg
gaggatatattatttttttcatgaattacccctggacattttgattttta
accccctggacacgggttatacccctggacaaacatcaaatcaaccccgt
ggacacaaaaaattaccactggacattggaatttaccccctggacatagc
aattttttggtattttttcaatacccctggacaattcatcctccaccccc
catgaacggattttttctggaagagcccaatcacCT Run BLAST on NCBI transcript from alignment at scaffold_142:48747..52311+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048267 ID=TCONS_00048267|Name=TCONS_00048267|organism=Clytia hemisphaerica|type=transcript|length=3565bp|location=Sequence derived from alignment at scaffold_142:48747..52311+ (Clytia hemisphaerica)
AAAAGGCGGAACGATTGCCAAGTGGGTTCCCTTAAACATGACACAAGTGT
TTGTTAAAGGTAAAtatgttctgtttttatatctttgctttctttatttt
attcaagaaaattgaatataatcgGGAGGTACTAAAATGCTACTTTTGGG
GGGCCTTCTGGGGAATAGGTCAACTTTATCAGCTTTTTAGTTTCACAATT
GAGTTCAAACTGAATAATCAATATAGCAATATTGGAGAAGtgctaaaata
atttttatttcgttGAACTCCTGAAAGTGCACGATTTACGTAAAAAGTGG
GTGTAAAAAATCCTCTTCTCTCTTTCCAAAGCTTCTTTAGCGCCTTATCT
ACCTTGCACTAATCTAATAACACTTTTCAAGTaaagtgttttttcatttc
gaaACTGAATATGAATTGAACAAAGGAAGAATATTCAGTGACAATCgtca
atttaaaaataatacatTAATCTGATTGGCCGAGAAAGATTGGGCGAGAG
GTTCAGAAGAGTGCGGGAATCGCGGGAATAAGAGATGTCAGTCTTTCACC
CATCTTTAACAGGCGTCATACtcaaaaagtttttgcaagAAAACGATACA
GTTTCGTGGGTGAAAGATTCAACCCCTTTAAAAGAAGACCTTGTTTTCAG
ATTTCGTGTGGAAAGGGAATGTAAAATTGTAACATGATGACTTGTTTGCA
ACAAactatcaaattttttaaacattggtTCTCAAATTTTGTTTGATGAG
TTTTCCACATATTATTTCCTGGGAAAGTTGTtagctattttttcaaaaaa
tatgttttctgaGAGAGATATTCTACTAATAGTTGCATGTGTTGAGAAGT
GGAAAACTAATGGGGACTTTTCCCCTTGCAGGATTCTGCATGGTTTGCTT
TCAATTACAGTGTTTCAATTACATTTGTGTCGGTACATGCAGGGttgaag
caaagaaaaacatttgcAATGCTATTATGAATTCagtttttgttataaga
attATCGGTGGTTGGTAACTTATCAGTAGAAAACTCGTAGGTGAAAATAT
TCGTCGTTAAAAACCTTCGCTGCTTGCAAATAATTTCGTCATTTATCGTC
GGAGAATTCTCTCAAGATAAGGTATAATAGTGAAAACTATACTGTTAATG
TTGGGGTTTCGGTTGCTGTCGAATTATAGTCTCTGTTTTCTAAAATATCT
TAAATTCTCTAAAAGTAAAGTTTGAATGTTATtgataaaacaaacaatct
TTCTCAGACTTTTTTGGGCTGTCGccacttgaaaatttttcaatttctca
cgACAGATAACCTACGCCTGCTGAAAGTTTACATTTAAGTAGGCGAAAGT
GCCTCGTAAAGcatgttttaaaatttcttagaaaaaaaattagaatacaA
ATGGCATAATGACGAAGGAAAGTTAAATTTATGGTATCAGCATTATTAGC
AAGTCTATGTCAATTTGTAGCTTTTGAAGTACACACATAAACGTAATTTA
TAATCAGTTCTCAGTTAGCAAAGACCACAAAGACATTGGATATGATATTT
TgagtaagaaaaataaatgttatgTTGACATTAGCTTAGCAGCTGTATGT
GGTTAGCACTTTATACTTTGTTCATGTAAAACTAGCAAATATCAATATTC
AACTGCAGATAAGATTCGCTAAaagttttattaatttttgcatGTTTCTG
CTAAAATTAGCAGGCTTTGCGTGAGAGCTTAATATCACTCaatttcaata
caccttttcgaccgtagtcgcgtggtcaggcgcgtgccactttatttaat
ttaccaccctaaactcgatccaatccttttttttttacacttttttctat
tgtcttaaggtgcgaaaaaaagactgggacggttttagagtggtaaaacg
gacaaaaaatgtccgctcggcaattggcggctacggtcgaaaaggtgtat
agcgAAACAATAGTAAGGCCGAGTGAACGTTTGACGAGGATACTGTATAA
TTTGAATTTAGCGCATTAGGAACACGTGGTTACAAAACAATCATGTTTCT
TGGTTAGACAAGAAAATCCCACCCTATATTTTACATCTCATCTCTGCTTC
AAATAAATACTCAACAACTATCTTGctttatttttcaggtttttgaaaag
ttacaaaatatttgaagattcACTAACAATGATGAACATCTACATCTTGA
AATCTGTGTTGAGTTTTGCTGCTTCGTTACTGCATTGTGTCGGTTTCTGG
GCGTTATGGAACGTCAAACAATCGAACCCGTACATGATCACGCAACGGTT
ATACCTACTACACTTAAGCCTGGCCGAGAATTTTCATTCGTTCTTCCTTG
GTATTTGGTATATCAATACTTTATTTGAAAACCCAAGATGGGCGAATTAT
GCCTTCATCTGTGCGGGCGGTGGGGCGTTTCTTTGGTATTTATCAATTAT
GATCATGCTGACAATTGACCGCTTCCTCATGGTTTATTTAGATGTCCGAT
ATTTAGTTTACTGGAATGTCCGAAAAACGAAGCTGGTTTTGGGGATTTGT
CTGGGTGTTTCGGTAATCGCGAATGTCATTTTCTTGGTATCGCTACCAAC
GTTCAACCAATCGCTGAAAGTCTTTTCTGTTTATCTTTGGTTTCCCGTCG
ATAATGGCTTCATTTTCATCGCCGTCGTTACATACGCGTATATTTTCAAA
CGCGTTTACCAACCGACCAATAAGAACGAAACAAAAGCGCGCGCTTACAC
AATCGACTCAACAAACGCATCTTCCGATCACGTGATTCATCATGACGTCA
TCGCTGATGACCAACAACGACGTTTAGCCTCGAGAACAATGACTCAAAAG
TCATCACATAAATTCCCAATGAAAACTTTTATGATTCCGCTTCTCTTGAT
CACGACTTTCATCCTTTTTATTGGATTCCCTGATAATACATACTTTTGGT
ATTTCTGTCTAGACAAAGAGGTGCCACAAGCCTTGGAGACTCTCTTCTAT
ATTTTTTATCCATCCGGTATAATGTCGGATGCGATAATTTACGTCTTGTT
TGCTAAAGACGTTCGAACGTACCTTTTCAAGAAGTTGGGCCTTGTGAAAC
AGAGAGCCAGAGGTGATAGTCAAGCTACGGTAACCACCTCAGATTACAAC
GTTTGACTTATCTGAATAACAAGAAGTTAATGTGTATATAGTAGTAGGGT
ACTAAGTATAGGGTCCCGAATAtacgtcatttttgaaaatattttcagct
attaCAAGCTGCATTGCTCCAAAAGCCTGGTTTAAGCttataatgggctc
ttccagaaaaaatccgttcatggggagtggaggatatattatttttttca
tgaattacccctggacattttgatttttaaccccctggacacgggttata
cccctggacaaacatcaaatcaaccccgtggacacaaaaaattaccactg
gacattggaatttaccccctggacatagcaattttttggtattttttcaa
tacccctggacaattcatcctccaccccccatgaacggattttttctgga
agagcccaatcacCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048267-exon-scaffold_142-1491911889:48747..48805 | TCONS_00048267-exon-scaffold_142-1491911889:48747..48805 | Clytia hemisphaerica | exon |
| TCONS_00048267-exon-scaffold_142-1510915933:48747..48805 | TCONS_00048267-exon-scaffold_142-1510915933:48747..48805 | Clytia hemisphaerica | exon |
| TCONS_00048267-exon-scaffold_142-1575043694:48747..48805 | TCONS_00048267-exon-scaffold_142-1575043694:48747..48805 | Clytia hemisphaerica | exon |
| TCONS_00048267-exon-scaffold_142-1491911889:50885..52311 | TCONS_00048267-exon-scaffold_142-1491911889:50885..52311 | Clytia hemisphaerica | exon |
| TCONS_00048267-exon-scaffold_142-1510915933:50885..52311 | TCONS_00048267-exon-scaffold_142-1510915933:50885..52311 | Clytia hemisphaerica | exon |
| TCONS_00048267-exon-scaffold_142-1575043694:50885..52311 | TCONS_00048267-exon-scaffold_142-1575043694:50885..52311 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:48747..52311 + |
Blast
The following BLAST results are available for this feature:
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