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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050923 ID=TCONS_00050923|Name=TCONS_00050923|organism=Clytia hemisphaerica|type=transcript|length=254bp
AAGCAAAGGAAGCTTTGAATAAATTATTGAAACAAGGGCCATTAGGACAC
CTAATAGGCGACGGGTCGCAAACTTGTTTGATATGCGAGTTCATTGTAGG
AGAATTGATGTACCAACTAGAATCAAATACTGTCAAAACAGAAGTTCTAC
CAGCTATCGAAGAGAAGATTTGCCAACTGTTATTTCCTTCAAATGGTCTA
AAGAAACGGGTCGTGACTTCTGGGtGCGAAGATGTTGCTGACTTACTATT
AAAA Run BLAST on NCBI transcript from alignment at scaffold_19:601496..604404- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050923 ID=TCONS_00050923|Name=TCONS_00050923|organism=Clytia hemisphaerica|type=transcript|length=2909bp|location=Sequence derived from alignment at scaffold_19:601496..604404- (Clytia hemisphaerica)
AAGCAAAGGAAGCTTTGAATAAATTATTGAAACAAGGTATTTGCTTGGAT
ATTGATGTTATAAAGAAAGATAGGCTTTTCTATGGGAATCATTTCACATG
TATATTGCCAAATATTACTTTGGTTGATTTGATTTCGAGCTTTGTGAAAT
AATTATTAAGCTTCTGACCTGAAACGTTAAGTGAAATTTTCTTAAATGAA
AACGTTGACTTATATATTTTAGATTTTGAAATTGAATTTATATCGGATTT
TGAATTTCAAAGTCTTTGAAATTAATTCATCGAGAACGTCACTTTGATTT
AGGGGTATCTACTGTAGAGGTGGTACCAATGTATTAAAGGGTTAAGATAT
ATATTAATACCTAGGAACATGGAGTCTAGCCTATTTCATGTGGTTATATC
CCCTGTACCCTGTTTCATTGAATGAGAATGATTAATTATGAATTAAGTAT
GAATTGTTTGCATATTTAATTCTTTCAGGGCCATTAGGACACCTAATAGG
CGACGGGTCGCAAACTTGTTTGATATGCGAGTTCATTGTAGGAGAATTGA
TGTACCAACTAGAATCAAATACTGTCAAAGTGAGTACAATTTTACAAAAA
TGTACGGTAGAAACCTTTTTTTCTGTCTTGAAGGGCTTGAAAAATGTTAC
TTAAATTTAGCTAACTAGTGCTCAGCAATCGACCAGAATATTTATTTTCG
CACTATTTTACTCACTTTTCCGCCGAGCCACTTGGCCTGTTAATCTTAAA
CATTTTTTGATCGATCAGTGAAATGTCCATTTGGAGCTAAGCCCAATCGG
GAAAACGCCTGGTCGGGGAAAACGTTCGGCAGCATATTTGAAACTTTATC
AATATTAATTTTCTCCATTCATGCGAAAAGTATTACAAATAACGTAATCA
GGAATCATCTTTCGAGTGATTATTTCGGTCACAGGCCTTTTTCAAAATTT
ATTCATATAGAAGTTTGTAAATGTTTCGATATATAGGGAGCCTCATTATA
TAACAATTAAGAAGAAAACAGTAGAATAATTTCATGTCTTCAGACGATCA
TCAACTGCAATATGTGAAAACTTGATTTATACGAATCTAATTTTTATCAA
ATTATAGACAGAAGTTCTACCAGCTATCGAAGAGAAGATTTGCCAACTGT
TATTTCCTTCAAATGGTCTAAAGAAACGGGTCGTGACTTCTGGGGTAAGT
TTAATAAATCCGTCTGCTACTTAATTTAAGGCTAACCAAAACTTCTTCTT
TGCTACAATGTGGAAACCATCCTCAAGGCCATTGGTCTAATAACCTAACA
TGGTTTACAGATTGCAGCAAAAGAAAGTAAATTCGCTTTAAAGCGAATGG
ACTTGAGCTTGTGAGAATTCCCTTTTGGAAAAAAGTGCAAGAACTAATGT
TGCGGAAAGGTATGCTATTCGGTAGCTTTGATTATTTTTTGCATAAAATA
GATAAGTAAATTAGGTTTAAATTTTAAATATAATTATTTTAGAATGTAAT
GAAAAATAATAAAAAAATGAAATTTATAGCTAACAGTAACCTGCAGTCGA
ATAACTGTAGTAGATTATCAAGGATAGGAGAACTTTATGTTATTTTTTAA
TGTATGTCATAAGATTAAAATTAATTTTTTTTCAATTAATTCTTCTTGGG
CCAATCAAGAAGAGAATGCTCAACATTTAAAAAGACTCAAGATTTTAATG
AAAACCATCATTTAGGAAATATATACCCTTACTGCTTAGAAATTTCTTTT
ATGGAAGCTGTTAACAAAAGAAGAGAAAAGGGTCAATTAACCTCGTGACA
TACCTTAATGTGAACTGCATTACAGCTTCTCACAAAAATAGAAAATCTTT
ACCATTGGAAACCCACCAGTATTTTGAAAACGTGGTTTTAGTGACTCTAA
CCAACTTTATAAACATTATGTTTTTTTTTAACTTTTTTGTGGCAATGTTA
GCGGATTTCGAGAAATAAATTTTGAAATTAGATTAATATTCTCACAAGTC
AGGACTATGAGAAAAATATTTTCTCTTTTAAAATAAACTTATAACCTGAG
AACCTAGAGACTTCGATCTAAATTTGACAATGCATTAGACAAAAACACGG
AAAATCGACTACGCAAAAATCACAACCTCTTTACTCAGCAGTAACTTTCC
CCACTTTTTCACCAATGAGTTTATTTATGTTGGCTTGTACCATCCCGTTT
TGATTCTGTTGAATATATCTATTAGAATATTTAATAGGATTCGTAGAAAG
GGGGGGGGACAAAATTTGTGTAGGAGAGCATATTTTATGACACTGTTATC
ATCTATTCATAATATAATTACAGTGTCATAGAATAAGTCTGCCCTCCTAC
ACAGATTTTTCACCCCTCCTGTCTACGGTACTGGATTCGGGCATCTTTTT
GCATCTTTTTCGTAAAATGCACAGATCTGTGCAGATTTCCCGCGACAAGA
ATTTTTGTCATTTGTTCAATTGACTTGGAAATTCATGAGCTCTTTTCTAT
TCCCATTTCCTTTGTAAATTTTAACCCAAATGCGCAAGAGAGTGTTCAAC
CATAAATAAGATGAACACATAGGAATCACACCCTTCAGAAATTCTGCACT
TAGTGAACATTATTTCTACACCTGTGTCGGGTTGAATCTGTAATTTGAGT
GGTCAATAGAGCATCCCAAGTCAATAGAGCAATCCTACTGTACATAATTA
ATAAGAAATCAATATTTTAGGGAATTTCCATCAGCCCCGCAAAAACCCCG
CCCGATTCTTTTTTGATATTTTTAATCCTTTTAATGACCTCTGTCACCCG
CTTTTTATTTGAAATTGATATCTCATGCAATAATTTTTCATTGAAAAATT
AAACAAAAAGAGTTATTTTTTTCTATTAGTGCGAAGATGTTGCTGACTTA
CTATTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050923-exon-scaffold_19-1575043694:604369..604404 | TCONS_00050923-exon-scaffold_19-1575043694:604369..604404 | Clytia hemisphaerica | exon |
| TCONS_00050923-exon-scaffold_19-1575043694:603826..603926 | TCONS_00050923-exon-scaffold_19-1575043694:603826..603926 | Clytia hemisphaerica | exon |
| TCONS_00050923-exon-scaffold_19-1575043694:603211..603297 | TCONS_00050923-exon-scaffold_19-1575043694:603211..603297 | Clytia hemisphaerica | exon |
| TCONS_00050923-exon-scaffold_19-1575043694:601496..601525 | TCONS_00050923-exon-scaffold_19-1575043694:601496..601525 | Clytia hemisphaerica | exon |
| TCONS_00050923-exon-scaffold_19-1510915933:604369..604404 | TCONS_00050923-exon-scaffold_19-1510915933:604369..604404 | Clytia hemisphaerica | exon |
| TCONS_00050923-exon-scaffold_19-1510915933:603826..603926 | TCONS_00050923-exon-scaffold_19-1510915933:603826..603926 | Clytia hemisphaerica | exon |
| TCONS_00050923-exon-scaffold_19-1510915933:603211..603297 | TCONS_00050923-exon-scaffold_19-1510915933:603211..603297 | Clytia hemisphaerica | exon |
| TCONS_00050923-exon-scaffold_19-1510915933:601496..601525 | TCONS_00050923-exon-scaffold_19-1510915933:601496..601525 | Clytia hemisphaerica | exon |
| TCONS_00050923-exon-scaffold_19-1491911889:604369..604404 | TCONS_00050923-exon-scaffold_19-1491911889:604369..604404 | Clytia hemisphaerica | exon |
| TCONS_00050923-exon-scaffold_19-1491911889:603826..603926 | TCONS_00050923-exon-scaffold_19-1491911889:603826..603926 | Clytia hemisphaerica | exon |
| TCONS_00050923-exon-scaffold_19-1491911889:603211..603297 | TCONS_00050923-exon-scaffold_19-1491911889:603211..603297 | Clytia hemisphaerica | exon |
| TCONS_00050923-exon-scaffold_19-1491911889:601496..601525 | TCONS_00050923-exon-scaffold_19-1491911889:601496..601525 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:601496..604404 - |
Blast
The following BLAST results are available for this feature:
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