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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048270 ID=TCONS_00048270|Name=TCONS_00048270|organism=Clytia hemisphaerica|type=transcript|length=582bp
GTCGCGTTTCTCTCTTCTTCCATCATATTACGACTTTGTATGGGCCATAC
AAAACGAATAAATAGCTTTGCCCTATACCAAATCTTCAGCAAGAACTTGA
AATCTAGTGATAAAAGTTATAAGCAGGACAGATACAGATATTTTCAAGAG
TCACTAATATGTCTTCAAAGTGGACAGAAATCTTTGTATTGATGGCTATT
TGCTTATCTTTCATGATTCAAAATTCAGATGGATATACATTTTCCCGACC
ACAAGAAAAATGTTCCGATGAAGAAAATTGGATTTGTGGAAGTGATTTCA
AAAGTTACAGAAATATTTGTGAATTCAAGAACGCCGCAGACGAATCACCT
TTACCTCTGACCATCATTTTATTGGGTAAATGTTGAATGATAAAATGTGA
ATTTTATTACTTAGCTTATATTTAGCTTTATTCTCAAATATGGAATTTTG
TAATCTATTTTCCGTTGATTGTTTAGTAAATAACAGTGTNAGCTTATATT
TAGCTTTATTCTCAAATATGGAATTTTGTAATCTATTTTCCGTTGATTGT
TTAGTAAATAACAGtgtactgtgtaaaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_142:85980..87010+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048270 ID=TCONS_00048270|Name=TCONS_00048270|organism=Clytia hemisphaerica|type=transcript|length=1031bp|location=Sequence derived from alignment at scaffold_142:85980..87010+ (Clytia hemisphaerica)
GTCGCGTTTCTCTCTTCTTCCATCATATTACGACTTTGTATGGGCCATAC
AAAACGAATAAATAGCTTTGCCCTATACCAAATCTTCAGCAAGAACTTGA
AATCTAGTGATAAAAGTTATAAGCAGGACAGATACAGATATTTTCAAGAG
TCACTAATATGTCTTCAAAGTGGACAGAAATCTTTGTATTGATGGCTATT
TGCTTATCTTTCATGATTCAAAATTCAGGTAATCAAATTCAATTAAAAGC
TTCTCATATAGATGATTACTTTAAGGCTAGAAAGAGCAGAATCCGGAAAA
AACAATAGACCAAGATGAGGCGATTGGCAGAAGATAAGTAAAAAAATCTG
GTATTTTAAATTTagtgatatttttcaatttaagtAAGTAGAGTAAGTAA
GTATGCAACCAAAGTCGGAGGCGAACCGAAAACTTCTATTTCGTTAGCTG
TCTACCTGGCAGGAGAAGAGGGGAAGAGCAGGGCCCTACGCTCTCCTTAC
GCTTGATCCTCTCTTAATTGTCGAGCATCAAACGTAGAGGCATCGAGTAC
CAGGGGACAAAGATTTTTGGTTGCGCTtccttagactctatattcATTGG
CCCtgcactttcaatttcatgtcGTGGGCCCTGAGTACGAATTTGATATC
GTTAAAATCTTTTCAATTTATTTACAGATGGATATACATTTTCCCGACCA
CAAGAAAAATGTTCCGATGAAGAAAATTGGATTTGTGGAAGTGATTTCAA
AAGTTACAGAAATATTTGTGAATTCAAGAACGCCGCAGACGAATCACCTT
TACCTCTGACCATCATTTTATTGGGTAAATGTTGAATGATAAAATGTGAA
TTTTATTACTTAGCTTATATTTAGCTTTATTCTCAAATATGGAATTTTGT
AATCTATTTTCCGTTGATTGTTTAGTAAATAACAGTGTNAGCTTATATTT
AGCTTTATTCTCAAATATGGAATTTTGTAATCTATTTTCCGTTGATTGTT
TAGTAAATAACAGtgtactgtgtaaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048270-exon-scaffold_142-1491911889:85980..86207 | TCONS_00048270-exon-scaffold_142-1491911889:85980..86207 | Clytia hemisphaerica | exon |
| TCONS_00048270-exon-scaffold_142-1510915933:85980..86207 | TCONS_00048270-exon-scaffold_142-1510915933:85980..86207 | Clytia hemisphaerica | exon |
| TCONS_00048270-exon-scaffold_142-1575043694:85980..86207 | TCONS_00048270-exon-scaffold_142-1575043694:85980..86207 | Clytia hemisphaerica | exon |
| TCONS_00048270-exon-scaffold_142-1491911889:86657..87010 | TCONS_00048270-exon-scaffold_142-1491911889:86657..87010 | Clytia hemisphaerica | exon |
| TCONS_00048270-exon-scaffold_142-1510915933:86657..87010 | TCONS_00048270-exon-scaffold_142-1510915933:86657..87010 | Clytia hemisphaerica | exon |
| TCONS_00048270-exon-scaffold_142-1575043694:86657..87010 | TCONS_00048270-exon-scaffold_142-1575043694:86657..87010 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:85980..87010 + |
Blast
The following BLAST results are available for this feature:
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