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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048271 ID=TCONS_00048271|Name=TCONS_00048271|organism=Clytia hemisphaerica|type=transcript|length=922bp
GTCGCGTTTCTCTCTTCTTCCATCATATTACGACTTTGTATGGGCCATAC
AAAACGAATAAATAGCTTTGCCCTATACCAAATCTTCAGCAAGAACTTGA
AATCTAGTGATAAAAGTTATAAGCAGGACAGATACAGATATTTTCAAGAG
TCACTAATATGTCTTCAAAGTGGACAGAAATCTTTGTATTGATGGCTATT
TGCTTATCTTTCATGATTCAAAATTCAGATGGATATACATTTTCCCGACC
ACAAGAAAAATGTTCCGATGAAGAAAATTGGATTTGTGGAAGTGATTTCA
AAAGTTACAGAAATATTTGTGAATTCAAGAACGCCGCAGACGAATCACCT
TTACCTCTGACCATCATTTTATTGGGTAAAACCATAATATACCGACGGAA
TACGGACACACAATTGAAGGATGATTAAAATCACGATATACCAAACAAAA
GACGAAGACGCCatcttattttcaaatttttaaatttttttttaaatttt
taatcttttattagaattttcgttgtaaattttaactttaattttGTTTA
TTCTACTAAATAAAATATTCCATTTGCAAGTCAAACGATTAGACTTGTAT
CCTGTATCTCAAAACGCAGTTAATCTGAGTGAATATTAACCAATAACCCA
TCGAGTACAGCTCAACAATGTATACCCCTTACAAGCATCGATAAACCTcg
gaaaataattaaaaaatgccCCGATAAAATCCCTATAAAGGACCCGAATA
CTGGTAGTGGTATtcttacaaagaaaagaaaaataatgcattacAAATTC
TcgattcttatgaaaaatctttcttatAAGAAATATTTCGGATATtgaaa
aggcattttaaatttggattttcaattcatttgaaaTCTTGTCCGCTATT
TAAAGTGCATTTTAATTTTGAC Run BLAST on NCBI transcript from alignment at scaffold_142:85980..90859+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048271 ID=TCONS_00048271|Name=TCONS_00048271|organism=Clytia hemisphaerica|type=transcript|length=4880bp|location=Sequence derived from alignment at scaffold_142:85980..90859+ (Clytia hemisphaerica)
GTCGCGTTTCTCTCTTCTTCCATCATATTACGACTTTGTATGGGCCATAC
AAAACGAATAAATAGCTTTGCCCTATACCAAATCTTCAGCAAGAACTTGA
AATCTAGTGATAAAAGTTATAAGCAGGACAGATACAGATATTTTCAAGAG
TCACTAATATGTCTTCAAAGTGGACAGAAATCTTTGTATTGATGGCTATT
TGCTTATCTTTCATGATTCAAAATTCAGGTAATCAAATTCAATTAAAAGC
TTCTCATATAGATGATTACTTTAAGGCTAGAAAGAGCAGAATCCGGAAAA
AACAATAGACCAAGATGAGGCGATTGGCAGAAGATAAGTAAAAAAATCTG
GTATTTTAAATTTagtgatatttttcaatttaagtAAGTAGAGTAAGTAA
GTATGCAACCAAAGTCGGAGGCGAACCGAAAACTTCTATTTCGTTAGCTG
TCTACCTGGCAGGAGAAGAGGGGAAGAGCAGGGCCCTACGCTCTCCTTAC
GCTTGATCCTCTCTTAATTGTCGAGCATCAAACGTAGAGGCATCGAGTAC
CAGGGGACAAAGATTTTTGGTTGCGCTtccttagactctatattcATTGG
CCCtgcactttcaatttcatgtcGTGGGCCCTGAGTACGAATTTGATATC
GTTAAAATCTTTTCAATTTATTTACAGATGGATATACATTTTCCCGACCA
CAAGAAAAATGTTCCGATGAAGAAAATTGGATTTGTGGAAGTGATTTCAA
AAGTTACAGAAATATTTGTGAATTCAAGAACGCCGCAGACGAATCACCTT
TACCTCTGACCATCATTTTATTGGGTAAATGTTGAATGATAAAATGTGAA
TTTTATTACTTAGCTTATATTTAGCTTTATTCTCAAATATGGAATTTTGT
AATCTATTTTCCGTTGATTGTTTAGTAAATAACAGTGTNAGCTTATATTT
AGCTTTATTCTCAAATATGGAATTTTGTAATCTATTTTCCGTTGATTGTT
TAGTAAATAACAGtgtactgtgtaaaaaaaacTCCTTTATATTTTACAAT
TATGAGTCCTTCATGCCTCGtgtcaaattgaaatattatgCGTTATTGTA
CGACAAACATTCTTGTGACTAGGGTATGTAATTTAAACATTTACATTTAT
CGTCCACCTCTAAGCAAAACGCactgtcgaatatttttagatatccgata
GCAAAATATCTCTTCTGTAGCAGCGAGTATCAAGAAAATAGTTTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGGTGAAC
GATAAACCATATATTCGAcgtgaaaaatcggatatcgaaattaTTCAGTC
TCGCTTTAATGATATTCGACTCAGCTTCGCTTCgtcgaatatcatcaagc
tcgACTGAATAATTTTCGATATCCGATTTTTCTTGTCGAATATCTGCTTA
ATATTCTGAAAAATATGTTatctaaatttaagatttccaCACAATATGTT
GCGACGAAAATGTGatatgtactagttatcgcatgacttcgagtgcaaaa
AGGGATATAGTATTTGTGAATTAGAAAACCTGCAGAAGAATATTCGAAGC
AGCTGACTTGGGAAAATTTCGGGTTAAACTACAGTTGAAAGTCGCGTAAA
TATTCACAATGAATATCAAATTATCATTTCATCAAGTATAATAAAGTACA
GTTTCGTATAATTTTCATATGAGAAAGATGCAAATATTAGAAAAAATACG
TTGGGAAAATGATAAAGGATTTGCAtccttgaaaatttcagatGTTCAAG
TGTATTCTGGATTTTTATCGATAATCTAGAAACATGTTAAAATTCAAGCA
GAATGGTGCTGCCcacttaaaaaaaagaaataactaCCTATATATCTCAA
TAATTAAAATTCCCTGAAATTTCATCACTTTCTCTAACTTAAAATTAGTA
TCCCTTACGGAAACTAAATGCTcgtattccattgaaaacgaatATAGAAT
Gcattaaaatagaataaaattctaggttcaaaactttgatgaatttctaa
tTCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNaatacatttatttttttcgaataatttgG
GTAAATTGCTCTGCTCCATTGATAATTGTAGCAAATTAGTTAGCTAAATT
GTTTTGTGTATTGGCGGTTTAGTTTGATCAAATTACGAGCAATTAGAACA
CaaaagatttgagaaaattgatgtttaaaagttttattttaacaagCCAA
GTTTTCAGTTGTGTCAGTCACATGTCCGTCAGGCCATGAGCTATGTTAGG
AAGAGTCTCTCTTCTTGGCTTAAATTCTCCAatgttatttccaaaattta
tctattaatatttattttctttctaactTTCAGGTAAAACCATAATATAC
CGACGGAATACGGACACACAATTGAAGGATGATTAAAATCACGATATACC
AAACAAAAGACGAAGACGCCatcttattttcaaatttttaaatttttttt
taaatttttaatcttttattagaattttcgttgtaaattttaactttaat
tttGTTTATTCTACTAAATAAAATATTCCATTTGCAAGTCAAACGATTAG
ACTTGTATCCTGTATCTCAAAACGCAGTTAATCTGAGTGAATATTAACCA
ATAACCCATCGAGTACAGCTCAACAATGTATACCCCTTACAAGCATCGAT
AAACCTcggaaaataattaaaaaatgccCCGATAAAATCCCTATAAAGGA
CCCGAATACTGGTAGTGGTATtcttacaaagaaaagaaaaataatgcatt
acAAATTCTcgattcttatgaaaaatctttcttatAAGAAATATTTCGGA
TATtgaaaaggcattttaaatttggattttcaattcatttgaaaTCTTGT
CCGCTATTTAAAGTGCATTTTAATTTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048271-exon-scaffold_142-1491911889:85980..86207 | TCONS_00048271-exon-scaffold_142-1491911889:85980..86207 | Clytia hemisphaerica | exon |
| TCONS_00048271-exon-scaffold_142-1510915933:85980..86207 | TCONS_00048271-exon-scaffold_142-1510915933:85980..86207 | Clytia hemisphaerica | exon |
| TCONS_00048271-exon-scaffold_142-1575043694:85980..86207 | TCONS_00048271-exon-scaffold_142-1575043694:85980..86207 | Clytia hemisphaerica | exon |
| TCONS_00048271-exon-scaffold_142-1491911889:86657..86803 | TCONS_00048271-exon-scaffold_142-1491911889:86657..86803 | Clytia hemisphaerica | exon |
| TCONS_00048271-exon-scaffold_142-1510915933:86657..86803 | TCONS_00048271-exon-scaffold_142-1510915933:86657..86803 | Clytia hemisphaerica | exon |
| TCONS_00048271-exon-scaffold_142-1575043694:86657..86803 | TCONS_00048271-exon-scaffold_142-1575043694:86657..86803 | Clytia hemisphaerica | exon |
| TCONS_00048271-exon-scaffold_142-1491911889:90313..90859 | TCONS_00048271-exon-scaffold_142-1491911889:90313..90859 | Clytia hemisphaerica | exon |
| TCONS_00048271-exon-scaffold_142-1510915933:90313..90859 | TCONS_00048271-exon-scaffold_142-1510915933:90313..90859 | Clytia hemisphaerica | exon |
| TCONS_00048271-exon-scaffold_142-1575043694:90313..90859 | TCONS_00048271-exon-scaffold_142-1575043694:90313..90859 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:85980..90859 + |
Blast
The following BLAST results are available for this feature:
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