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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048347 ID=TCONS_00048347|Name=TCONS_00048347|organism=Clytia hemisphaerica|type=transcript|length=1605bp
TTTCACTTTAATCAAAACACTGTTTCTGCTTATTAGAGTGTCAATAAACT
GTGAGATAGTGTTTTTGTGTGTCACGCTTTTCaagaaattcatttttata
CTTGTAGCTGACCTGAGTTGAGTGGGGAAACACGATACTGAAACACGATG
GTTGCTGAGCAAaagtccaaaacaccaaaacGGGTATGCGTTATTGGAGC
AGGTCCGTGTGGTCTTGCTGTACTAAACGCATTCGAAAGCGCCCGTGCGA
AAGGAGAAGACATTCCCGAAATTGTGCTTTTCGATAAACAGGATGAAGTC
GCAGGATTGTGGAATTATACTTGGAGAACTGGAGTTGATCGTTTCGGCGA
ACAACTTCATAACAGTCAATATCGTTATCTATGGTCCAACGGACCCAAAG
AATGTTTAGAGCTTGCAGATTACTCTTTTGAAGAACATTTCGGAAAACCT
ATTCCTTCGTTCCCTCCTCGAGTGGTTTTGAGAGATTACCTTCTGGGCCG
TGTGAAAAAGAACAAACTTTTAGAGAAATTTGACGTTCGCATGAACCATA
TTGTTCGTAATGTCAAAGATCTTGAAGATGAAAGCTTTGAAGTTACTTAC
GAGGATCTCAACCAACGTAAGANCTTGAAGACGAAAGCTTTGAAGTTACT
TACGAGGATCTCAACCAACGTAAGATTTCtactgaaattttttcacaagt
caTCGTGGCTATAGGTCATTTCTCAGTTCCACATTTCCCCTCCTACGCTG
GCTTGGAATCATATCCAGGACATCTTTTGCACGCTCACGATTTCCGAGAC
GCAGCTTCATATAAAGATCAGAAAGTTGTTTTGGTGGGTGCGAGTTACTC
TGCAGAAGATATCGCTCTCCAACTTCATAAATACGGCGTTGGTGAAGTTA
TTGCATCCTACCGTACGCAGGCAATGGGCTTCAAATGGCCTACAAATATC
ACTGAGCGACCATGCCTGACCCATATTGACGGAAAAACAGTACATTTCTC
AGACAACTCAACCTACGAAGCAGACGCCATCATCTTTTGTACAGGCTATC
AGTACTATTTCCCTTTCCTGCCTCAGCACTTACGATTTGAGAGCCCAAAC
ATTGAATACCCCAATGGTCTTTACAAAGGGACAGTTCTCAATGAGAACAC
TAACTTGATGTTTATGGGAATGCAAGATCAATGGTATACTTTCACGATGT
TTGATGCTGAAGCTTTCTACGTTCGAGACGTCATCTTAGGGAAAATTGAG
CTACCAGATAAATCGAAGCGTGATGTTGATATTAAGAAATGGTACGACCG
TTGTATCGCCAAAACTACTGCAGTCGAAGCCATTGAATTTCAGAGAGACT
TTGTTGGGGACCTTTTGACAGTAAGTGGAttgatttttaatgattttcat
tgttttgaccCTTCgttatcacaggaaaaaattttcgatttccaaggttg
gaaatttcaagttttcttagttggaaaaaagataaaatccaatggaaaat
ccaacctgaaaatgtgggacgttctccaaggttgaaaattttgcattttc
catggcttggaattttcgtaaatccaggttgaaaaaagccaaaatccaaa
tttaa Run BLAST on NCBI transcript from alignment at scaffold_142:123371..124975- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048347 ID=TCONS_00048347|Name=TCONS_00048347|organism=Clytia hemisphaerica|type=transcript|length=1605bp|location=Sequence derived from alignment at scaffold_142:123371..124975- (Clytia hemisphaerica)
TTTCACTTTAATCAAAACACTGTTTCTGCTTATTAGAGTGTCAATAAACT
GTGAGATAGTGTTTTTGTGTGTCACGCTTTTCAAGAAATTCATTTTTATA
CTTGTAGCTGACCTGAGTTGAGTGGGGAAACACGATACTGAAACACGATG
GTTGCTGAGCAAAAGTCCAAAACACCAAAACGGGTATGCGTTATTGGAGC
AGGTCCGTGTGGTCTTGCTGTACTAAACGCATTCGAAAGCGCCCGTGCGA
AAGGAGAAGACATTCCCGAAATTGTGCTTTTCGATAAACAGGATGAAGTC
GCAGGATTGTGGAATTATACTTGGAGAACTGGAGTTGATCGTTTCGGCGA
ACAACTTCATAACAGTCAATATCGTTATCTATGGTCCAACGGACCCAAAG
AATGTTTAGAGCTTGCAGATTACTCTTTTGAAGAACATTTCGGAAAACCT
ATTCCTTCGTTCCCTCCTCGAGTGGTTTTGAGAGATTACCTTCTGGGCCG
TGTGAAAAAGAACAAACTTTTAGAGAAATTTGACGTTCGCATGAACCATA
TTGTTCGTAATGTCAAAGATCTTGAAGATGAAAGCTTTGAAGTTACTTAC
GAGGATCTCAACCAACGTAAGANCTTGAAGACGAAAGCTTTGAAGTTACT
TACGAGGATCTCAACCAACGTAAGATTTCTACTGAAATTTTTTCACAAGT
CATCGTGGCTATAGGTCATTTCTCAGTTCCACATTTCCCCTCCTACGCTG
GCTTGGAATCATATCCAGGACATCTTTTGCACGCTCACGATTTCCGAGAC
GCAGCTTCATATAAAGATCAGAAAGTTGTTTTGGTGGGTGCGAGTTACTC
TGCAGAAGATATCGCTCTCCAACTTCATAAATACGGCGTTGGTGAAGTTA
TTGCATCCTACCGTACGCAGGCAATGGGCTTCAAATGGCCTACAAATATC
ACTGAGCGACCATGCCTGACCCATATTGACGGAAAAACAGTACATTTCTC
AGACAACTCAACCTACGAAGCAGACGCCATCATCTTTTGTACAGGCTATC
AGTACTATTTCCCTTTCCTGCCTCAGCACTTACGATTTGAGAGCCCAAAC
ATTGAATACCCCAATGGTCTTTACAAAGGGACAGTTCTCAATGAGAACAC
TAACTTGATGTTTATGGGAATGCAAGATCAATGGTATACTTTCACGATGT
TTGATGCTGAAGCTTTCTACGTTCGAGACGTCATCTTAGGGAAAATTGAG
CTACCAGATAAATCGAAGCGTGATGTTGATATTAAGAAATGGTACGACCG
TTGTATCGCCAAAACTACTGCAGTCGAAGCCATTGAATTTCAGAGAGACT
TTGTTGGGGACCTTTTGACAGTAAGTGGATTGATTTTTAATGATTTTCAT
TGTTTTGACCCTTCGTTATCACAGGAAAAAATTTTCGATTTCCAAGGTTG
GAAATTTCAAGTTTTCTTAGTTGGAAAAAAGATAAAATCCAATGGAAAAT
CCAACCTGAAAATGTGGGACGTTCTCCAAGGTTGAAAATTTTGCATTTTC
CATGGCTTGGAATTTTCGTAAATCCAGGTTGAAAAAAGCCAAAATCCAAA
TTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048347-exon-scaffold_142-1575043694:123371..124975 | TCONS_00048347-exon-scaffold_142-1575043694:123371..124975 | Clytia hemisphaerica | exon |
| TCONS_00048347-exon-scaffold_142-1510915933:123371..124975 | TCONS_00048347-exon-scaffold_142-1510915933:123371..124975 | Clytia hemisphaerica | exon |
| TCONS_00048347-exon-scaffold_142-1491911889:123371..124975 | TCONS_00048347-exon-scaffold_142-1491911889:123371..124975 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:123371..124975 - |
Blast
The following BLAST results are available for this feature:
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