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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048457 ID=TCONS_00048457|Name=TCONS_00048457|organism=Clytia hemisphaerica|type=transcript|length=1268bp
ctcatatatgtctgaaattttactaccgacccccccccctgaatcaGGTA
GCATGATAACTTGTCGCACATTGATCTACGTTAGTCGGGACGTTAAGACT
ATGTATTTGTCATACGAAACAATGCTCTCTCTTGGCATAGTTAATCATGA
GTTTCCATCAGTTGGTCAGTTCATGAATCCCAGTACTCAACCGTCGAAAC
CAGATGTTGACCAACCAATGTTAAGTGGCATATTCGAGACGAACGTTGAA
GTGATGTGTGATTGTATAAGAAGAACACCTTTCCCACCTCCCCCGACGAA
ACTTCCTTTTGAATGTACCGAGGAAAACATTCCTGAGATGCGTGACTGGT
TGCTCAAGACATTCGCTGGTTCAACCTTCAATACCTGTCCACATCAGCCA
CTCCCTACCATGACCGGACCTCCAGTCGAAATTCATCTCAAAGAAGACGC
CAAACCTGTTGCTCGACACAAAGCGATCCCGGTACCCATTCATTGGCAAG
AGCAAGTACGTCAAGACCTCTTCCGTGATGAATCACTCGGTGTTATCGAA
CGTGTCCCTTATGGTGAACCCTCGCAATGGTGTCATCGCATGGTGGTCAC
CCGTAAACATGATGGATCACCACGTTGAACTGTTGATCTCTCCCCCTTAA
ATAAACACTGCAAAAGGGAGACTCATAATGCTGAATCGCCATTCCACCTT
GCAAGACGGATCCCACGACACACATGGAAGACGGTTACTGACGCATGGAA
CGGTTTTCATAGTGTCCCGTTGCGTGAATCCGATCGTCACCTCACAACAT
TCATCACAACATATGGTAGATGGAGATACAAACGTGCTCCTCAAGGTTTC
TTGTCATCTGGGGATGGTTACAACCGTCGCTTTGACGCTATACTCGCTGA
TTTTGATCGAAAAGAGCGCATTGTGGACGACACGTTGTTTTATGATAATG
AACTCCAAGAACATTGGTGGAGAACTATTGACTTTCTTATAACTGTCGGT
AATGCTGGTATCGTTCTTAACCCAAATAAGTTTCAGTTTGCCTCTCGCGA
GGTAGACTTTGCTGGTTTCCGCATTACTAGTGAACGCATTGACCCACTTC
CCAAATATTACAATGCGATCAAGAACTTTCCTACACCTAAATCAACCACA
GACATTAGAAGTTGGTTTGGGCTAGTGAACCAGGTTGCGAACTATGCTCA
GCTTCGCCAGTACATGGAACCATTTCGTCCTTTTCTGTCACCCCGCCATC
CCTTCAAATGGACAGCTG Run BLAST on NCBI protein sequence of TCONS_00048457-protein >TCONS_00048457-protein ID=TCONS_00048457-protein|Name=TCONS_00048457-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
SYMSEILLPTPPPESGSMITCRTLIYVSRDVKTMYLSYETMLSLGIVNHE
FPSVGQFMNPSTQPSKPDVDQPMLSGIFETNVEVMCDCIRRTPFPPPPTK
LPFECTEENIPEMRDWLLKTFAGSTFNTCPHQPLPTMTGPPVEIHLKEDA
KPVARHKAIPVPIHWQEQVRQDLFRDESLGVIERVPYGEPSQWCHRMVVT
RKHDGSPR Run BLAST on NCBI transcript from alignment at scaffold_142:141949..143216 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048457 ID=TCONS_00048457|Name=TCONS_00048457|organism=Clytia hemisphaerica|type=transcript|length=1268bp|location=Sequence derived from alignment at scaffold_142:141949..143216 (Clytia hemisphaerica)
CAGCTGTCCATTTGAAGGGATGGCGGGGTGACAGAAAAGGACGAAATGGT
TCCATGTACTGGCGAAGCTGAGCATAGTTCGCAACCTGGTTCACTAGCCC
AAACCAACTTCTAATGTCTGTGGTTGATTTAGGTGTAGGAAAGTTCTTGA
TCGCATTGTAATATTTGGGAAGTGGGTCAATGCGTTCACTAGTAATGCGG
AAACCAGCAAAGTCTACCTCGCGAGAGGCAAACTGAAACTTATTTGGGTT
AAGAACGATACCAGCATTACCGACAGTTATAAGAAAGTCAATAGTTCTCC
ACCAATGTTCTTGGAGTTCATTATCATAAAACAACGTGTCGTCCACAATG
CGCTCTTTTCGATCAAAATCAGCGAGTATAGCGTCAAAGCGACGGTTGTA
ACCATCCCCAGATGACAAGAAACCTTGAGGAGCACGTTTGTATCTCCATC
TACCATATGTTGTGATGAATGTTGTGAGGTGACGATCGGATTCACGCAAC
GGGACACTATGAAAACCGTTCCATGCGTCAGTAACCGTCTTCCATGTGTG
TCGTGGGATCCGTCTTGCAAGGTGGAATGGCGATTCAGCATTATGAGTCT
CCCTTTTGCAGTGTTTATTTAAGGGGGAGAGATCAACAGTTCAACGTGGT
GATCCATCATGTTTACGGGTGACCACCATGCGATGACACCATTGCGAGGG
TTCACCATAAGGGACACGTTCGATAACACCGAGTGATTCATCACGGAAGA
GGTCTTGACGTACTTGCTCTTGCCAATGAATGGGTACCGGGATCGCTTTG
TGTCGAGCAACAGGTTTGGCGTCTTCTTTGAGATGAATTTCGACTGGAGG
TCCGGTCATGGTAGGGAGTGGCTGATGTGGACAGGTATTGAAGGTTGAAC
CAGCGAATGTCTTGAGCAACCAGTCACGCATCTCAGGAATGTTTTCCTCG
GTACATTCAAAAGGAAGTTTCGTCGGGGGAGGTGGGAAAGGTGTTCTTCT
TATACAATCACACATCACTTCAACGTTCGTCTCGAATATGCCACTTAACA
TTGGTTGGTCAACATCTGGTTTCGACGGTTGAGTACTGGGATTCATGAAC
TGACCAACTGATGGAAACTCATGATTAACTATGCCAAGAGAGAGCATTGT
TTCGTATGACAAATACATAGTCTTAACGTCCCGACTAACGTAGATCAATG
TGCGACAAGTTATCATGCTACCtgattcaggggggggggtcggtagtaaa
atttcagacatatatgag Coding sequence (CDS) from alignment at scaffold_142:141949..143216 >TCONS_00048457 ID=TCONS_00048457|Name=TCONS_00048457|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_142:141949..143216 (Clytia hemisphaerica)
TCAACGTGGTGATCCATCATGTTTACGGGTGACCACCATGCGATGACACC
ATTGCGAGGGTTCACCATAAGGGACACGTTCGATAACACCGAGTGATTCA
TCACGGAAGAGGTCTTGACGTACTTGCTCTTGCCAATGAATGGGTACCGG
GATCGCTTTGTGTCGAGCAACAGGTTTGGCGTCTTCTTTGAGATGAATTT
CGACTGGAGGTCCGGTCATGGTAGGGAGTGGCTGATGTGGACAGGTATTG
AAGGTTGAACCAGCGAATGTCTTGAGCAACCAGTCACGCATCTCAGGAAT
GTTTTCCTCGGTACATTCAAAAGGAAGTTTCGTCGGGGGAGGTGGGAAAG
GTGTTCTTCTTATACAATCACACATCACTTCAACGTTCGTCTCGAATATG
CCACTTAACATTGGTTGGTCAACATCTGGTTTCGACGGTTGAGTACTGGG
ATTCATGAACTGACCAACTGATGGAAACTCATGATTAACTATGCCAAGAG
AGAGCATTGTTTCGTATGACAAATACATAGTCTTAACGTCCCGACTAACG
TAGATCAATGTGCGACAAGTTATCATGCTACCtgattcaggggggggggt
cggtagtaaaatttcagacatatatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048457-exon-scaffold_142-1491911889:141949..143216 | TCONS_00048457-exon-scaffold_142-1491911889:141949..143216 | Clytia hemisphaerica | exon |
| TCONS_00048457-exon-scaffold_142-1510915933:141949..143216 | TCONS_00048457-exon-scaffold_142-1510915933:141949..143216 | Clytia hemisphaerica | exon |
| TCONS_00048457-exon-scaffold_142-1575043694:141949..143216 | TCONS_00048457-exon-scaffold_142-1575043694:141949..143216 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:141949..143216 . |
Blast
The following BLAST results are available for this feature:
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