TCONS_00048458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048458
Unique NameTCONS_00048458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048458 ID=TCONS_00048458|Name=TCONS_00048458|organism=Clytia hemisphaerica|type=transcript|length=549bp
NNAGCCTCTGGTAGAATCGGGCTGTCTCTCTACTCATGCCGCCATTCGAG
GAAAATATCAACGGAGTGAATGTGGCATTTTGACGAAGCACGTCCTTGTT
GtattttctcttcttttcttaCTCCATTGCACGGAATGAGGCTTGAAGAG
ACTGGTTTCGATAGCTAGGGGCGAATGGGTAAAATACCCTAACATCAACA
AATGCCCTTTGCATTCTCTGCCAGAATCCTCTAGCACTCACATCTGCGCG
CAGGTCATTATCAGCTGTTTCGTCAATTGGTGGTTCTTTACGCACATCTT
TGCATACGGTGGATAAAAGCTCGGCAGTGACATCACGTATCTCGTTGTGA
CGTAGAGTAATCAGACCACCTACTTTACAGCATAAAGCATGATCAACATG
GAAGGCTGCTCCGCAGATGCATTCAGTTGGTAGACGATTTGGTGGCCGCC
CATACCTGATGAAGATTGCATCCACAAACTCTCGCTTTGATAGGTTAAAT
CCCTCACTCTTGAGCGGTAATGCGGAAAGCCATATGGAGGCGTCTGTCT
Run BLAST on NCBI

protein sequence of TCONS_00048458-protein

>TCONS_00048458-protein ID=TCONS_00048458-protein|Name=TCONS_00048458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
TDASIWLSALPLKSEGFNLSKREFVDAIFIRYGRPPNRLPTECICGAAFH
VDHALCCKVGGLITLRHNEIRDVTAELLSTVCKDVRKEPPIDETADNDLR
ADVSARGFWQRMQRAFVDVRVFYPFAPSYRNQSLQASFRAME
Run BLAST on NCBI

transcript from alignment at scaffold_142:147223..147771

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048458 ID=TCONS_00048458|Name=TCONS_00048458|organism=Clytia hemisphaerica|type=transcript|length=549bp|location=Sequence derived from alignment at scaffold_142:147223..147771 (Clytia hemisphaerica)
AGACAGACGCCTCCATATGGCTTTCCGCATTACCGCTCAAGAGTGAGGGA
TTTAACCTATCAAAGCGAGAGTTTGTGGATGCAATCTTCATCAGGTATGG
GCGGCCACCAAATCGTCTACCAACTGAATGCATCTGCGGAGCAGCCTTCC
ATGTTGATCATGCTTTATGCTGTAAAGTAGGTGGTCTGATTACTCTACGT
CACAACGAGATACGTGATGTCACTGCCGAGCTTTTATCCACCGTATGCAA
AGATGTGCGTAAAGAACCACCAATTGACGAAACAGCTGATAATGACCTGC
GCGCAGATGTGAGTGCTAGAGGATTCTGGCAGAGAATGCAAAGGGCATTT
GTTGATGTTAGGGTATTTTACCCATTCGCCCCTAGCTATCGAAACCAGTC
TCTTCAAGCCTCATTCCGTGCAATGGAGtaagaaaagaagagaaaataCA
ACAAGGACGTGCTTCGTCAAAATGCCACATTCACTCCGTTGATATTTTCC
TCGAATGGCGGCATGAGTAGAGAGACAGCCCGATTCTACCAGAGGCTNN

Coding sequence (CDS) from alignment at scaffold_142:147223..147771

>TCONS_00048458 ID=TCONS_00048458|Name=TCONS_00048458|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_142:147223..147771 (Clytia hemisphaerica)
ACAGACGCCTCCATATGGCTTTCCGCATTACCGCTCAAGAGTGAGGGATT
TAACCTATCAAAGCGAGAGTTTGTGGATGCAATCTTCATCAGGTATGGGC
GGCCACCAAATCGTCTACCAACTGAATGCATCTGCGGAGCAGCCTTCCAT
GTTGATCATGCTTTATGCTGTAAAGTAGGTGGTCTGATTACTCTACGTCA
CAACGAGATACGTGATGTCACTGCCGAGCTTTTATCCACCGTATGCAAAG
ATGTGCGTAAAGAACCACCAATTGACGAAACAGCTGATAATGACCTGCGC
GCAGATGTGAGTGCTAGAGGATTCTGGCAGAGAATGCAAAGGGCATTTGT
TGATGTTAGGGTATTTTACCCATTCGCCCCTAGCTATCGAAACCAGTCTC
TTCAAGCCTCATTCCGTGCAATGGAGtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030812XLOC_030812Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048458-proteinTCONS_00048458-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048458-exon-scaffold_142-1491911889:147223..147771TCONS_00048458-exon-scaffold_142-1491911889:147223..147771Clytia hemisphaericaexon
TCONS_00048458-exon-scaffold_142-1510915933:147223..147771TCONS_00048458-exon-scaffold_142-1510915933:147223..147771Clytia hemisphaericaexon
TCONS_00048458-exon-scaffold_142-1575043694:147223..147771TCONS_00048458-exon-scaffold_142-1575043694:147223..147771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:147223..147771 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.299517	0.234194	0.236292	0.450385	2.39904	1.79877	2.57855	2.41014	2.80898	2.68762	5.00742	2.96523	1.24432	2.71149	1.36099	1.14325	1.15053	1.68244	1.20269	1.04465	1.81154	1.49446	0.355869	0.937931	0.815685	0.65774	1.14903	1.26075	0.623963	0.261853
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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