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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048274 ID=TCONS_00048274|Name=TCONS_00048274|organism=Clytia hemisphaerica|type=transcript|length=2214bp
CATCAAAACACACGAAAATTATGAAAGCTACTGAACTTTAAGTTTGTGGT
CGAAATTCGTGTGCATGAAATGTGAAGTGTCTCATCCTGGAACTTAATTT
GAAAAGATGCTCGTTTTGATGCGGTCAAtcgaaaatatagaaaaaatttc
ttttttgaatctTAACCTCAGTGAAATCTTTATTGGATACTGAGACGTAT
TTATTGGAAGATAGTGCTGGCTGGAATGTCATATAAGAGTTGATGCTATT
TCATATAGTTTCAATTCCAGTACCACAGACATTTTcgtatttgaaagaaa
aaagtgtCCACTGTTTTGGTATTTGAGCGaatattaaaaactttttaccg
AATTTATTggaaacattttaagaatatttttcataaaCCGTCACGTTTTT
ACTCGAAAGAATGAATCCCATTACGTCATCAACAGCATTAATGGCTTCGT
ACGATTATTCACGTGACCCTTATGTAGGCGCGAGGATGGATGAGGAGCGG
CGTTTGGTGGACGGAGGATCAAAGAACAAAAGCTATAATGATGATACCAG
AATCAAAATTGACGGAGACGATAAAAAGCCGAACGAACTGGTCACTTTTA
ACGTCAGCGGTCGTAAATTCATAACAACCAGCCATACGTTATATAATTTC
CCCGATTCCCTTATCGGAACAAGTGAAAACCGCGCTAAATTGAAACGAAC
CAAAGATGGGGAGATCTTCTTAGATAGACATGCTATCGTCTTCGAAAGCG
TGCTCACGTTTTATCAGACGGGTATTTTCGAACCACCCTCTCAAgtcaat
caaaatattttcgttgGTGATATCAAATATTATGAACTAGTTGAAGAAGC
AATGCAGTCTGGATTAAAAGGATTTGATAATAAGGTTATACCGATGCCAG
AAAGATTAGTACAGCGTAAAATATGGACATTATTGGAGTACCCTGATTCA
TCATTCATGGCAAGAATAGTATCCATGTTTTCTCTGCTGGTTATTATAAC
TTCAATCGTAACATTCTGTTGGGAAACTGTACCGGAGTATAATACCAATA
AAGTCAATTATGATGACCTATCACCTGGTAAACAGTTGACTATAAAGATT
CTTGACGATATTGAGTTATTCTGTATCGTCTATTTCACATTTGAGATTAT
ACTGCGATTCGTATGTTCACCCAAGAAATGGTCATTTatgaaagatattt
tgaatATCATTGATATCGTGTCGATTCTACCGTTTTATGTGACACTCATA
TTCAGCATGGAAGGTAGTGTTTCCATATACTTTCTGCGTgccgttcgatt
ggttcgagtATTTCGGGTCTTTAAATTATCACGACATtcgaatgaaatga
aaatattgggTATAGCTGTTAGAGAAAGTGGACGCGAGCTTGGAGTACTT
GTATTCTTTATTTTGTTGGCAGTACTTTTATTCTCAAGTGCTGTTTATTA
TGCGGAAGATGGTGTACCAGGCACGAAGTTAGTCTCGATTCCAGGAGCTT
TTTGGTGGTCTATTGTTACTATGACAACAGTGGGATACGGAGACGAAGTT
CCACAATCAATTCcTGGTCGTTTGGTCGGTGCAGTGTGCGCCATGACAGG
TATCCTCGTGATTGCAATGCCGATTCCTATCATTGTCAATAATTTCACAC
GACAATATCAACGATTGAAACCAGCATCAAAATACTGGGAAGATTTTCAA
GACACGCGGAAATTATCCGGTGAGGGTACGGACGAAAACGGAAAAACAGA
CCGGAAAACTAGTCACGTGATTGGATTATATGAAGTAGACATTAATAAAA
ATGAAGCCAAAAATGCAACGGTGGTTAGTAGTAACCATAGCAATCATGTA
AATGGTAGCACAACCAAAAATAATGGTGACGTCACTGAAATCGGTTTACC
GAATGGGAAGGTTGAAATCGCCCATACAGCGCTTTGAGAAAAAGTTTTCG
GGCTAAAGAGAGCAAAAGAGGGGCCAAAATACTTTTTATGGACAATAAGG
GTAAAAGACATAGTATTATGGGTACTATTTACCAAAATTTggggaaaagt
gaaaaatattcaaacTCACGTTCGATATaaagaatatatttattttgata
actttttttataaacatttgaATTGATATATATTcgtaatctttaaaaaa
cttttttttcgtttagattttttttggagGAATTGACGATGTCAAAACTT
TCGACCTCTGCCTG Run BLAST on NCBI transcript from alignment at scaffold_142:172084..190720+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048274 ID=TCONS_00048274|Name=TCONS_00048274|organism=Clytia hemisphaerica|type=transcript|length=18637bp|location=Sequence derived from alignment at scaffold_142:172084..190720+ (Clytia hemisphaerica)
CATCAAAACACACGAAAATTATGAAAGCTACTGAACTTTAAGTTTGTGGT
CGAAATTCGTGTGCATGAAATGTGAAGTGTCTCATCCTGGAACTTAATTT
GAAAAGATGCTCGTTTTGATGCGGTCAAtcgaaaatatagaaaaaatttc
ttttttgaatctTAACCTCAGTGAAATCTTTATTGGATACTGAGACGTAT
TTATTGGAAGATAGTGCTGGCTGGAATGTCATATAAGAGTTGATGCTATT
TCATATAGTTTCAATTCCAGTACCACAGACATTTTcgtatttgaaagaaa
aaagtgtCCACTGTTTTGGTATTTGAGCGaatattaaaaactttttaccg
AATTTATTggaaacattttaagaatatttttcataaaCCGTCACGTTTTT
ACTCGAAAGAATGAATCCCATTACGTCATCAACAGCATTAATGGCTTCGT
ACGATTATTCACGTGACCCTTATGGTATGTTATTTCTTTTACTTACAGTT
TGTCCGGggaaaaaatacagaaaatatCGTTAAGCTTACCGTTGCTTGTA
AATTTattaaatcttttgtttttaaataagagtgatatcgtttgcttact
catcatcAAAGTAAATGAATTACCAGACGTGCGGCATTTAAGGGTCAGTT
GTTTTCAAGTTTCAGTTAGTGCTGCGCTGTAAGGGTACGTGTTTACATAT
ACCTTGTTcctatgaaaattttcaaatgaaatgaatttttccTTCGTAAG
GAAGGAAATTAAGCTAAATTATACAATAGGGTGCTGCTCGCGCTCTTGTA
CATGTGTATATTTCCCAACCTTTTTGAAAGGGAGGtgttccaaaaagaaa
aagataacgATGCAAGGGTGTACTTTTTGTCggtttctgcactgtaaggg
tgtcaAATTTCGTAGCTtatctctgcactgtaagggtccgattttgaaag
tcgatttttgggccgaacgtatggtcgttttcagaacGAGCACCCCCCCC
ACCAGGCTCCCGGGATAGTTTTGCAGAAATTGTAAAGGATTTTTTCCAGA
TGCATGACATATTAGGAAACCGGGTAACTTTCAGAAGTTCATTTTTCGAA
CACCCTGAAATTCGGTCTATTTCCGCTAGAGAATTGCAGTGAAATCTTTG
TCTGGGGTAGTGAAATCTTATCCCGAACGACGGTACTGAGCTCagaaatt
tcaaaacgaggcgaACCTCTTTGtttaatcaaaagatattaaattctCGA
AGCATTTAAAAAGGACACTCCAGACACTCCATccatataagaatataagg
cttcggttaccgtgaaaagcacagggtAGGGTAGGCTTAGGCGGTTAAAA
TGtgaagaacaatttaagaacatttcaagactttgtggaatctaaaacac
ctgttttcttagaaaaatggaaagAATACTCAAAAGATtccgaaaataag
aacacattaagaacatttttagccttgaaagccgaaaagttaagaacatc
tgaaggcttcaaaaattttggatgttcttataaaaaacaaaacgtgTAGA
TGTCATTCTTACGATCACTGATTTACagtatattaaattaaaaattttat
catGCAACCTCACGCGAAAGATAATGTCTCCTCAACTACTCACATATAAT
GGATAAGAAGGAAACCTCTACAAAACTAAAACGAGATTCTTATCATCAAA
TGAATTTTCATGACATAATGGGACGAGATgtagtttttacaagcttttat
ttgatttggttgatcgttaaccagtaatgaaacaattttgttactttttc
taaagaacgcgtcatttcaaatgaccaattaataAAGTATCTTAAAAAAA
CTCCATTTAATCTGGACATAATTCCATCCCTTGTCGGTCCCTGCGAATAT
CATTCGTCTGATCAGAGTCGTTTACCACTGTCAACAAAACTAGTCTacaa
caagtttttttataagaataaccaaaaatttttgatgtttttaacttttc
aatCTTTAGGACTAAacatgtttttaacatgttcttattttcactatttt
ttgagtaattttgttcatttcctaagaaatcaggtgttttagattTCACA
AAggcttaagatgttcttaatatttttggccatcaaagccttttgttctt
atatagtttgttcttatacaaaacgtgtaTTTGATATTTATCGAAAAATT
GACACACCTGATTTAAGGTATgagaaaaagtaaattaaaggcTTAACCTT
TTTACATTAGTCTGATGCAGAGTATTTATATTAAATTTTTGATGCATTTA
GCAGCATTTGGAAGTATTGCAACATTTTTGGAGGGAGCACAAAAGGAAGA
TACTACAGGTAATTTTCATcctgaaaccttttgaaaaaatttccgatAAG
GGGACCAAATTTCCTTAATTTCTTTGCTTTTCctccatttttacaaaaaa
tttccgATTTCTAAgaactttgtttacatttacATAGCATTGCATTGCcc
tgatgaaaatcgaggtaaAAGTTCTCATCCTAGTGAGGTTTTGAGACCTC
AAAATCAGACCTGATGAAATTGAGACAGGGGCGCGCTACTAGGTCATAAA
AACTGGACTCAGGCTTGTCTAAGCCTGAGTTCAAAGTTACTATGGGATGG
GTTTGATATAACAAAATTCAGAACTTTGAATCTTATACAGCTAAATTCGC
ATAAATTGAAAACTGAAATTTCAAATGGAtgaattctaaaaaatttatcA
TGTTGCAGGCGTCAAGGAGGGGGTCCAATGAAAAATTGGACaaataaatt
tattcaaaatacggcgagacaaaatcataaaaatcaatatttcgagaagt
aataaagtaataaaggaagagtttttcaaaaagtgagtaaaaatatatat
tatctGATAAGGAAATATTAAAAGATGTGTTTGATCTAggaattaaaatc
taaattgaCTTTACTTTCGGCAAATTTTAAAATCGTTATTATGTGTTAAA
AAAAGGATTATTTTCCGATTCTCTATTTGGCGAAAAATTCTTCGAAATTC
CAGGTAAGTGgctttttatgaattttaatttATAGAAAAGGGGAATTCTG
TATAAAGAGcctaaaaaaagttcaaatttaaattcaaatttgaaagaCGA
AACAAATTAGTACTTTTTGTGGATATCTTCTGCATTTTTGGACAGGATAA
AGTTGTTAGATAAAAGAAAGATCTGAAAAGTGCTCAAAATGACCGAGAGT
GTAATTTGTTGTATGACTATAAACAGTTTCTGTCATTAAGATATAATACA
CCTATCGCAACCCTTGGCGCGTGTGAGGACACTGGTAacgaaaatacaag
gaaaattcTCCCCGAGAACGGCATTGAAAAAACAAGTGTAGAAGAGCTCT
TGTGAAAAATGTAAGTTACATTTAAGCGAACGTAAATATCAAAGTTATTC
TCGAATGCTAAAAGTACTTTGCACTCTACCGCAGAGACTCGGGAAAATGC
CTCTAGGCGGgaatttgcttgttttttttattaagtTCTAGACTAAAAAT
GCCGTGCACCGAGAAAAAGTGTctccttgtaaattcattaccaaTCCCCA
AAGAAATCGGCTAAGGGTTGATAGGTGTTCAAATAACCGATAAGGATTGG
TCGcaaagaatacacgttttttttaagaacattcaagatttttgaagtct
tcggatgttcttaacttatttaGTATAAAGCTtacgaatgttcttaacat
gttctctattttcaccattttcttaagaaaacgggtgtttcagagtcggc
aaagccttaaaatgttcttaactttttcttaacatttcggccatcgaagc
ctgatgttcttttatagtttgttcttatatagtttgttcttataaaaaaa
acgtgtaatctaaCTAATGAAGAGTGCTAAAATAGGGCCTGAGTATAAAG
CTATTTGATCCTTTTCACTTTGTCCCCTAAAATCTGTCGTTATAAATTGG
GCGGGGTAGTTTGAAAAATTCCATGTTAATGAAATGGACagcttttgaag
gaaaaatataaaaaaaatcatggaaataTTTTTGACCTTATTCACTGAAA
AATGTAGTTTTTTAAGGGACCATTTTACTTGTAAAGGcaaattatttata
ttttatagtttagaggaaagaaagaaaattaggGTCTTTTTGGGCTTTTG
CCTAATTTATTCCTccttttaaaaagtgataggTTAAACGAAAGAACTAT
ATAACTGTTTAAATATTTATCCTggtgaaaaaaatctttttggttTAGAA
TTTTCATGatggtttttttttatttgttttttttgggggggcaATCAATA
AAAGCATTTAATTATTGTTAATCTCATTAAGGCCTAATCGCTATCTGTTA
TTTGCTCTTTTTCATGAGAATAAACCGATTCAGCATAAATTTATATGAAT
TGATATAGTTAAATCATTCAAAATCACCTGAGGGGAGTCTTCTAAGTTAT
TCATCCCCTTAAAGTAAGCAAGCCTATatgaactaactttttttgtttca
tctcAAATCAATGTGCAATGTAGTATTGGNTAAAAGCATTTAGTTATAGT
TAATCTCATTAAGGCCTAATCCCTATCTGTTATTTGCACTTTTTGATGAT
AATAAACTGATTCAGCATAAATTTGTATGAATTGATATAGTTAAATCATT
CAAATTCACCTGAGGGGGTCTTCTAAGTTATTCATCCCCTTAAAGTAAGC
AAGCCTATATGAACTAACTTCTTTTGTTTCATCTCAAATCAATGAGCAGT
GTCTATTATAGTAAACCTGATAGAGAAAATATAGCGTGAAAGTAGATGAA
AATGTTAGATAATTTTATTAGTATGGTCTTGCGGTCAATCGGTAAAGTCA
GTAAATCTTTTAATGTGGCATAAAATCTAGAAATTTTTAGTCACACATGA
GTAAGAATATAAGCGCAAACATTGTAGTTAGCTAGATAACGTCCAGAGAA
ATTGAGAAATTCAGCCATGAGTGTTATGAGAGTTTGAGAAAGCAGTGAAC
GAAGAGGATCCAGTTTCAAAGGGAATTATTCAGGTATcaggtaaaaaata
aataaaaaacttccACTCTGCAGGCTCTTTTTAATAACAAGAAAGTTTAC
AGCTATCCGTTTCAGTGACCAAGTGGTAATAAGGATAGAAAGGgtgaaaa
tttggtaaaatgtgAAGATGGTCAAGTGGACTAAAGTCTGtcacaaaata
atttgcagttgagacaaaaatggctttagcttttgatagaatttgaatca
agttgcgattttgtccttgttgaaaagatatttgtgagtgtaATATTATC
Aagccaaaaaaaaatgaaaaaagaaaagaaaatgaaaatgaaaaatgaag
aagaaaaaaatctactcattgtagaaatgtggtataattaccatttttac
AGGAGTGGTTCTTCAATCTTATATCATCATccctgtgaaaaaaattttca
aaaatattcattcaatcaaaagatatctaacaaagtttattgctggttga
ctctaagtagtaaaaaacgacaaaaatcagccttttgtcgatcaaccaat
tcaaattctatcaaaagttacagccattttcgTCTCagctgtaaattatt
ttgagacagactttagtgtaTAATATTTCACTGGGGACGACATTTTGGCT
TATTTTCCAGTGGGATGGACTTCTCACAAGGCCTTATCGTGACTCTTTTC
ACAAAACTTCCttagcattcaaataggtaaaataaTTTGCCACCTTAATG
TTGAATCTTGAGTTCAATTAATGAAGAAAATTGACCCTACCGGGCAGACT
TTTAAGCTCAACGTGTTAAATGTATAAACATATTTCCCAAGAGGTATTGA
AATTCACACGtgattgaaaattgatccagaagataaaatattttgtccgA
CCAATAATAAAGGTGTGATAAGAAAAACTTTTGATCGATAAAAACCCTCA
TCGGTGATCaatatttccttgttttttcGAAATCGATGATGAGCTACTgt
ttgtaaaatttgaaaaagagatcacttttttgaaaacatgaacaaacttt
aaaaaaataatttgagtaAGATGTAAATTTTTTTAGGGACTTTCAATCGC
AAGAGAATATAGGCTAGTAACCACTCAAGAACGAATATCATAATCAGTGA
TGGATCTGAGGGGGGGGCTCAAAATTCATGACATGGATTCTCCATTTCCT
TATAAGGAGTATGGGAAAGAGGAAGACTTCTcctttataaattttgaaac
ccCTTAGTTAATCGTAGAAATTCTAGCGAGAATAATTTCAGCGtcttagc
gagttttccctattttcgctaaaataaatcttgctaaaacacgccgaatc
gacagatcgctaaaatttatccacgcgaaatttctggttatatcgccttg
atacatttttatcaataggaagagtttcagtgcaaagaaatgctagaaaa
cgaattcagtcaataatgtaatacaagtattcgctaaaatttatccacgc
gaaattttttgaaatcgtgattcgctaaaataaatccaaaaaaaattacg
attttcctgactcgctaatatacgctaaactTAGtgtcgctaaaatttct
acgattaaagtaataaaaaagtgTTTCATAACCTGCAAGGCATTTATAAT
TTAAGTTTGTGTTTAACAGATAGATGATAGCTTTTAGCACTCGAAGAAGA
TTTGAAGATCTAAAAATTACTAAGTTAAAAAAAGGTTATCATTAGAAGCA
AAATTAAATTTGTTAATCTTTCAACCataaaaatggtatggttttcTTTA
AGTTAGTTTAGATTGAGAggataataaaataataaatcgCGCAGTGGTTA
TACGTGCTGTTTAATTTGTAAATGTTTTCAGTAATGAGTATTATGAACAG
TGAAAGTTCAAGGGAGACATGGCGAGATGATTGGTGGCCTGCCCTTCATA
ATATAATCAAAACTCTACAATCCCATATTTTAGAGATaattcaaatcttc
atttttacagatagtaatttttttggaaggttatataatgtataaaactt
gaaaaaaattaaagtttgtCGGAAAGAGTGCATCTTAAGTTTAAAAGTAA
AATCTCTCCTAATTCTTAATCAACACACTCAAATAGTCAAATATACTAAA
TAACTCAAATATCATTATTAGAATTTGAGAATCGCCACAAAATTAAtgaa
agatgatgatgaatacATCAGGATTCACAAGTATTCAACACGCAAACAGG
CTAGTCTTTTCAAGTGTACTGGCTAGACCTATGCCTAGTAAGTATATTAT
TTTGTTTATACAACTGCCTCTGTTTCGaacctctgtaattcgaatctttc
tgcaaTTCGAACGAAAACATTGGTCACCTCAGCTGGAAAGTAGCGATAAA
TTCTTTCTTGACCCCTCcaagctgacacacaacgttgtttcaacgtttat
ttaacgtccacaacgtccaaataacgttagatgaacgttgaaacaacgtt
gtgtgccagctgggcttgaagatcgaattattGAGAGTCAACTACCTTTG
TACCTGGAATAATTTTTCCCGTCTCTTCATAGAGTCTTAAGCTGTGTTGC
CTCTCTAATACATAGTATATGAATTTATTTGGAAATGACCATTTTGTCCT
TAAATGAACGATAAAGTGGACTTTCTGATGAGTTCTTACTTTGGAGTTGG
CTGCACTTGCTAGAACTAGTTTTGAACTGCCATCAGGTCATATACTGTAT
GCAAACTTCAATGTGactaaaaaaagagaaaaaaaaacatttaaaggctt
GTATAATGGTtacaaaatctttcttttttaaaagctaAGTTTCGCTGTGA
GGAGTGACTCCAGGGGTCGATCCAGCTTTAGGTTTACCAGCTCTGTGTCT
GCGTCTGTCTGTCTCTGTGTTTTTTAGGTCTCGTTTAAGTAAGTCTGTTC
TATGAAACGTCAGGGAGAAAATCTCTGGGAATAATTGTCCTCGAATTTGT
TGCGTGAGCATGTATGGTCAAACctataatttcattttctcttgTTGTTA
TAATATGACAATTAGTGGGCAATGGAATACAAGAAGCCATCCAAATGCCT
CTTGTCTTTTGGAAGTGGTTGCTATAGCAAATAAACTCTCCCATATATTG
ACATTCAAAATAAAGTCTTCAAAAATGATCTCAATTCTATGTATATGCGG
ATGGTTGGTTAAACATAAGGATATATGACCCAAAACACATATAGAACATT
TAAAGCAAACTTTGCGAGTCGTATCGGAGAAAAAACGAGCTCTCATCGGA
CGTTTTTGAACGTACTCAGAAAGATTTTTATTGCAAATTATGAGAGTCTG
TGTGAAGCAGATGCCATATTGATGGTCCAATGTAGAGAGAAATcttaatg
tttttttatgaattttacggtcaatttttttttgtgtagTTGATGTAAAG
AAATGGAAAGGAAATTTTATTATGAAGTTTAAATCGCGTATAAAAAGCAT
TATAAGGGTTTGATTGAAGAAGGATTTCTTTTGCCTGAtttataactttt
tttgggagaagaagaaaacgaatttAAGAAGAAAAGTTCAAGAAGGTGGA
TTTTGTGTAAGATGTTCAAGAGAAAGTGGAGAAGAGGTACTACtaactaa
aaaaaataattctgggGTCATTGAATTTGTTATTTGTTTTCTAAGATACA
TATCAATAATGCTTTTATAGATGGTAAGGTcaacaggcccggcggaagcg
gggagactggggagacttcagcctctccacttttgagcaaatgagatttt
tttctcaaattcttaGCGAGTTTTATCTCATTTTTTGAGCagtcagcctc
cccacttttacggttgctCCACCGGGCTTGAAAGACGTGGTGATTTGCCT
GTTAGTTAATATATTGGTTGTATGGTTGGATTTTTTAtctttatgttttc
tttatGTCTTGCAAAAATCAACAACATATTTTCATCTAAATAAGCTTTAG
TTTAACGAGCCAGTGATATTCGTTGAcaagtcattgcattgatgtTGGAC
AGTAGTGGTTCATGTAACGTTTATGAGAACATTTACATAGATATGTGGAA
TTCGTGTGCAACTAACAACGCCTTAAACAATCTCAGACGTCAATGtaatt
attttaaattattatCTCGATGAACTTTCCATAATACACTTTATCTGATg
atttcaattcatgatattgtGATAATTGTGTTTGCcacaaattttgaatt
caaacaatAAACCTGACCTACCTGACTCATCGAGGTAAAAAAAGGTatcc
tgaccagcggcacatccctGTACCCCTTTTTACCCAAGCACACCCTCCCC
GGATGTGATAGAAGTCTGGAAACACCTATTTACCCTTCCCACAAATCTTC
CAAAGGAAAGTTCTAAACTTGATCCAATTTTCCcacaaacttttttccaa
aaaggaaagaaagcgTCGAACAAACGGTGTAcatttaacatctttttaac
atCCAtgacgttagattaacgttgaaataacgCTTTGGTTTCTGATAAAG
AGTTTACGGGTAGTTGACAGCTAATCAGGATATATAAGAAAGTATCAATT
TCGTCTGATTAGGTTACATGATAGTATCAATAGTATCAATTTCCAAATCT
TTGGTGGGAGGGTCAAGGTATTaagtgaaaactttttaaaaagtataaat
GTCAATAGCTTTTGTGTCAAATTTCTGATAGAAAGATTTTCAATATTGAG
GAATGTtctcaacctcgttccctgcgtattattagcttttttatgcttac
tgatagcgctagataatagggttctctggcgtcaatcagtagcgtaaata
aagcctgggatacacggggacgaggttggaaTGTTCTTAGAGTCTGTCGT
GtaaaataaaaaggaattttgaaGAATTATTCAAAAGTTTGATTCGAGTT
GTTAGTTTGTGGTTTACAATGCGCTTAAAATACGGTAAATAACCATTTAA
AATCTATGATTGTGATTATCACGGAATATGTATTAGAATTCCTGCATGAA
ACTCTCCGCAAAAGCGAATTTTGGCTTTCAGCTCTTTACTTTggctttac
ttttttaattgtGTCAATATCTTATTCTTTTTAAATGCTTTAAGCGTAGT
AGTGAAGCGGTTATAAACCTTGATTCCCCTATGTgaggtcagggttcgat
tcTCACTCGGTGCtatgattcacttggcaagttaATGTACCTTCGCTCGG
GTCGACCCATGCCTTGCGAGGGGAACTGGGTACCGTCACTCTGATAAAAG
AGTATGGGGAGTATGTCAGGCATTTCATGAGGTGTGGTGACGATACTCAT
AGGTTCAACACATGCGAAGATGTATGTCCTCCCGTGTAGTTCGGGTATCG
TCGTCTATACACCAATAACTCTGCCTTGTCGCGAGCGTAGAGTTAGCAGT
GTGTGGTAAGCGTGATAATTTCCTAGGGTAGGTATCTATCCAGGGATAAG
GCCCATTTCGGATAATTTTGAGGATTCGattctctctttttctcttcttt
gaaTGCTTTGGAGAGTTAGACCTCAAACAGCTCCATAATAACTTTTTTAG
GGAACTTTTGATGAGCATTAAGCAGAGATATATATATTAACCCTTGACTT
TGCGCACTGTAGCCGAATGCTCTACCTTTAAACTACGGATTGCTGCACTG
ACAAGAACGTACTCTTTAAGCAAAAATAGGCCCTGGTGGGTTTCAATTTC
CAACATAATTTTGACCCTGACAGAACAAATTTGACAAATCAAgtcaaaaa
agtaaatattttcttccaaTTTATGACAAAAGTTGCTGCAAAGGGACGAT
GACAAGCGAAGTGTTCATGTATTCATATTTTACACTTTAGaatggcacgc
cagtcgggctggaacggtatcaggCGGGAAAAGTGaacgtaggagttagg
taagcgtaaaaagaaattttgttggcggcaagggctgaaagtaGTCTCTC
ACCAACTTTTTCTCGTTCTCCTACGTAGCTCCTATtgtagcaaacgcccg
ccgcccgTCGCCTTTATGTTTCCAccccctctgacatgattaattaacag
actagtttgctagtctaattTTACCTTGATGATCTTTTTACAAATATGTa
aaataatattgaaatttCGCCATAGTAATAGACGGCCAGGAGGTCATTAG
CATTTTCAACAATAACATTTAAATTACCTTCCATTAACGTTCATGATGAT
GCAAAGTAACTTTGATATAACTATCAATTAAAGGGGAATTCTGTGGTTCA
AAAACGAAATCGATTTTAAACCCGCAAGAATCGTGTCTAACTTTTCGACC
GGAATTGGTCacttttctaccatttttgcAACGGACGTGACTCacaaata
gatcttatcggagtttttgatttttcttaaaaagcgATGCATATTGTGGG
ATtatttcgggagtattacaaaaGAATTccagagatttctattgtaatac
tcccgaaacaatcacACAATACatcgtttttttagaaaaatcaaaaactc
cgataagatctattgtgAGCTATTTTGCATTAGAAGTATGAACCGCAAAA
actgtttttgaaaattaataaatacctctacaaaaaaagtcaaataataA
TAGATAGCTTGCGACGGCAACATGGTTTCTGCAGCCTACGGCGATTTTTG
CAAGACATTTGCGTAGTTTTCAATAGTAAAAAGAAGATCGCAAAATAATA
TTTAATTAGCTTGAAAGCAACGTTTCAATGAATAAGGTTCAATCATAATA
ACACCCAGAAAATACCtccaagaaaaattatttcacatTGATGAGTTCAG
TTTTTACAGCTAATTCTCAAAGTTAAATATCCCGACGGGGGAGAAACTGG
GGGCGGAATATGTGTGCAAAGCATGTAGCTACTTCAATGTGACTTTTTTC
TGTGGGATTGATGATGAATTTTGAGAAGTAGAACAGTCGAAAATATAATT
AAACAGTCAAATACACTGGTCTAGTGGAAGGCACTTTTCGTTTTGTTCTC
GTTTAGCATGTATAAATGTGCCGTAACGCGAGGGGTAGCTGCCAAAAATT
CGTCTGTCGTCAAAAAATATCTACCAATACCTTGCTATTAGTTTTTGACG
AAGAACACACCAAGGCTTTGTTAGTCCAACGACGGCTCACGgtccttaac
cctttaagtaccacggccacttttttctaagttttttaaagaaaatcgct
gcACGGActtgcctgaatgatagaaaggtgcccagtggtaaaactccAAA
TTAATTCGgtagaggacagaatcaagtaaaccAGTAGGGCCAattttgga
ggttcttgaatcactcattgaccaaaaatggtcaaaaaacggtcaaaatc
ttaaaaaagtcgatttttgtcaaatctttgcattttttcgactttttggc
ttaaaatctcgctggaaagattcactttaaattttttttcttgaccaTGA
AACCCAACCCAATTCCTACgaattagaccaaaaatgatgatttctaactc
aaactggccATTACAGGAGGATAGCCCATGTCTAGTATACTCATCATTGG
TACTTAATGGGTTAATTGGTTAGTTTATCcggaaataaaaatttaggGGA
TTTCCGCTGGAAATATTGGACCAAACAGTCATCATTATGaatgaattaaa
ttttaaattgcCTCGCAACCAGTGTTCATATGACtttgatacaatttttt
ttaagaaactagttttccCAAGCAGactcaatgtttcttaaaaaatcggc
cttttgagccttaaatgtttctcacatgtttctaaactttttgacataat
cagcctcgtGGAAgtctggattggaaggttcttaaaaaaaaactgaatta
aaaaatttaggcattctgagcctcatgtttcttaaaagtgtttcttgaaa
aaaaaaaacgtgtagttttttttcttaattaatttcttaataataaaatt
ttgcCACAAAACTTTAATCAGTTGTCATCATCTCTATTTGAAGGTTTGGT
AGGGAGAAAGAATTtttcatttgaatattttgaaagattttttgtgACAC
GCGTGGTTTTAACAAACGTAGCGTATAGGGGAGGTTttggatttgttttt
ttttatttgattttcaagaTGCATGCGGGCCAAGCAGCAGGTCAAATTAA
TGTGGGAGAAGTACATATACATCCTGCCGGTAAGACAATAATTTGGATAT
TAGAGATTAAACGTTGTTCAACTATAAATTACTTTGGTTCGATATAACGA
AATGATAAATACAACATCCAAGTTTAAACTTCCTTTGCAATGGCCACTAT
TTTTCTCTCTTACGCGGGAAATGGTGTTATTTCGAGTTTTCTTAGCTGGT
GAGCAAGCGGAACCTACTACATGTTAAGAGAATCATATTTTTAAGCTAAA
CTTAACAGATGCTTGGATCTTAGACAAAATATGATTACGTCAGTTGTATC
ATTTCTATAGAGCTCAATAGATAATAGCAAAAAGAAGACTTACTTGTCAT
TTTCTTTATCCCAACATGCGATTTTTGATCACACGGGGTCAAGGAAATAT
CCGTGGTCGTCTGGTAGAGGCAAAGACCCTCCAAGGAAGATAACGCTCTT
AAACTACATCACATTTTGTTGTCTGGTACAGGAAAGCTTGTTTTATGCAA
GGATAAAATGAATTCTATGTATGCAAATCGTCTAACGCATGTGATATGTA
CCTGAAAAACAAGCAATgataacaaaattgaaaataaattctagAAATAT
TTGTCGGTAGGGGTTGGTAtttatccttccaagaagttttaaAGAGggaa
ataacttttatagatcCTTTATCTTGAACAAATTAAACTTTGCGCTCGCC
AATTCAGAATGATGATATTGCAACACAACCCATCCGACACCAATCAATCC
AGAATTGATCGTtatccaaaaaaaatattttcagtaattaaagCAATCTT
CTTCAGTTAGTTAAAAGAAGAAGGACAAATTCAATTGTTGGATATCAGTT
TGTGTCAGCTCTAAATTGTGTCTTGACATAGTAAACAGGGGTTATTCATC
TGtgtaaaaagcaacaaaaatctACTTAACAGACGTTTCATCTATCTAAC
ATCATACTAACATCCAAATTTATTTCAGGTTAAAAGCTGGTCTGAAAACC
TTATCTACCGGTCAATTAAAAggtaaaaatttatcatttcaTAATGTTAC
AACCTagaaactaactttttttctttctctttcaaTTTTAGTAGGCGCGA
GGATGGATGAGGAGCGGCGTTTGGTGGACGGAGGATCAAAGAACAAAAGC
TATAATGATGATACCAGAATCAAAATTGACGGAGACGATAAAAAGCCGAA
CGAACTGGTCACTTTTAACGTCAGCGGTCGTAAATTCATAACAACCAGCC
ATACGTTATATAATTTCCCCGATTCCCTTATCGGAACAAGTGAAAACCGC
GCTAAATTGAAACGAACCAAAGATGGGGAGATCTTCTTAGATAGACATGC
TATCGTCTTCGAAAGCGTGCTCACGTTTTATCAGACGGGTATTTTCGAAC
CACCCTCTCAAgtcaatcaaaatattttcgttgGTGATATCAAATATTAT
GAACTAGTTGAAGAAGCAATGCAGTCTGGATTAAAAGGATTTGATAATAA
GGTTATACCGATGCCAGAAAGATTAGTACAGCGTAAAATATGGACATTAT
TGGAGTACCCTGATTCATCATTCATGGCAAGAATAGTATCCATGTTTTCT
CTGCTGGTTATTATAACTTCAATCGTAACATTCTGTTGGGAAACTGTACC
GGAGTATAATACCAATAAAGTCAATTATGATGACCTATCACCTGGTAAAC
AGTTGACTATAAAGATTCTTGACGATATTGAGTTATTCTGTATCGTCTAT
TTCACATTTGAGATTATACTGCGATTCGTATGTTCACCCAAGAAATGGTC
ATTTatgaaagatattttgaatATCATTGATATCGTGTCGATTCTACCGT
TTTATGTGACACTCATATTCAGCATGGAAGGTAGTGTTTCCATATACTTT
CTGCGTgccgttcgattggttcgagtATTTCGGGTCTTTAAATTATCACG
ACATtcgaatgaaatgaaaatattgggTATAGCTGTTAGAGAAAGTGGAC
GCGAGCTTGGAGTACTTGTATTCTTTATTTTGTTGGCAGTACTTTTATTC
TCAAGTGCTGTTTATTATGCGGAAGATGGTGTACCAGGCACGAAGTTAGT
CTCGATTCCAGGAGCTTTTTGGTGGTCTATTGTTACTATGACAACAGTGG
GATACGGAGACGAAGTTCCACAATCAATTCGTAAGTAGAATTCCTTTACT
TATCGCcaggaggggggggggcactcatatggttcGACCTacagtatgtg
ccgcccttaagggtaggtttttcgaaatgcactgtaagggtgtacttttg
atagagtgcactacaaAGGTCTTCTTTATGCTGGATACACTGTTagggtg
tgtttggggactACTGAATTGTAAGTCCGGTTAGtaagattttgatttat
atCTTTATAGTTGTAACtcgcacccattttgatttgttttgcacattgtg
ccgacatctcaggctcattttcaggtggcttcagcaaaataagatatgaa
atcaaactacactgtatgtaagggtcaaaaacattcagtaaaatgcactg
taagggtaccttttcattGCTCAAtggctgcactgtaagggctcgatttt
gaaaaccatttttttgACAGCACACGCCGTTGTTTAAAAATCGAGTGAAT
AAATAATCTAAAATGGAGTCCAGGATGTTGTTTGTTGTCAAAATTCTCAT
ATATGTTTAAAATATCACCGGAGTTTGACCTATTTTCCCTTgaattttgc
tttatttttctgTCGGGTAATGAAGTTGATGTTTTCAGAGCTTTTTACGC
AATTTTAAAAAGGAAAGCGGTTACACTAGAGACTCAGAGAGTAGATTATG
CTGGAGGATAAAAAGAATATATACTTCTGAACTAGATGAGCTAGTAAATT
GCATGAAAACATTTCATAGACAAATTAGACCTCATTTGATAGTGGTGCCA
AAAATTTCTGGTCCAAACACAATTAAAGCACACTTCTCACTTTAAGAAAA
ATTCCAGTCACTCTATGAAaccacaaatatcttttttggaatttttccaa
ACTATCTACAATATCTATTGCTTACCGCACTATCGCTCTTATTAAGAACA
AATGATAACAGTCTTTTGTATTCACTTTACCAATTTTCAGATCGTCGCCA
GCGAAAAAGAAAtgaacttaagggctctgaccatagtccaaaaattgatt
ttggtatttgaacataaaagttacatttcaggttccttaacacttttaac
aaagaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNgtgcgcagagtcatttacagatttttc
ttgtaacaatgagaagacaatggatctctcttgggagcaacgagagaagt
taatccacctattctaatccgttggtcaaaagttatgagtttttttaagc
aaaatccagatgaaaaattgatgaaaaaccactattttgaagatttcgag
acaaacaagcatttacaaaaattttccgcaaaaatttttattgttcggta
aaagatacaccatctattgggaaaagattttcaaaatgttttttcttcgc
cgaaactaagctcttcaaagttgaaatactcttcctcgcaaaagtcttca
ttttcttcttcatcaaattttttcaatgcaattcttgaattttcagattc
aggaatagtttgtctaacagaaaatgtatgacatgccatagttttattgg
ttacatcagtcagaaaacacattttaaacacggcaattatgaaaaattca
ctatggtcagagcccttaataggggtggaaaataaaattgatgctctcta
attcgacgttctactattgaGACGCACCatcattcgataatattgaaagg
cACCGTCAACAAGATACTCTCACTAACGACGCTCTGCTACCCTTATTCTG
TGAACATCcaatttctcttgaaaatctACTTAGAGAAAGTCGACTGTAAC
TTCAAACAAATAAAAGCGAAATATCGAACGATTACAAATTTTCTACTTAA
ATAAAGTCTTAAAATTGAGGAAATATAAACTTAAAATTCCTGAATTGTTT
AATATTTGTCTCAATTTAATCGAGAGTCCTGATGTTTTGTTAAATTAGAA
AGTTTCTAAGGTggaattctttttgtttttttacagcTGGTCGTTTGGTC
GGTGCAGTGTGCGCCATGACAGGTATCCTCGTGATTGCAATGCCGATTCC
TATCATTGTCAATAATTTCACACGACAATATCAACGATTGAAACCAGCAT
CAAAATACTGGGAAGATTTTCAAGACACGCGGAAATTATCCGGTGAGGGT
ACGGACGAAAACGGAAAAACAGACCGGAAAACTAGTCACGTGATTGGATT
ATATGAAGTAGACATTAATAAAAATGAAGCCAAAAATGCAACGGTGGTTA
GTAGTAACCATAGCAATCATGTAAATGGTAGCACAACCAAAAATAATGGT
GACGTCACTGAAATCGGTTTACCGAATGGGAAGGTTGAAATCGCCCATAC
AGCGCTTTGAGAAAAAGTTTTCGGGCTAAAGAGAGCAAAAGAGGGGCCAA
AATACTTTTTATGGACAATAAGGGTAAAAGACATAGTATTATGGGTACTA
TTTACCAAAATTTggggaaaagtgaaaaatattcaaacTCACGTTCGATA
TaaagaatatatttattttgataactttttttataaacatttgaATTGAT
ATATATTcgtaatctttaaaaaacttttttttcgtttagattttttttgg
agGAATTGACGATGTCAAAACTTTCGACCTCTGCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048274-exon-scaffold_142-1491911889:172084..172557 | TCONS_00048274-exon-scaffold_142-1491911889:172084..172557 | Clytia hemisphaerica | exon |
| TCONS_00048274-exon-scaffold_142-1510915933:172084..172557 | TCONS_00048274-exon-scaffold_142-1510915933:172084..172557 | Clytia hemisphaerica | exon |
| TCONS_00048274-exon-scaffold_142-1575043694:172084..172557 | TCONS_00048274-exon-scaffold_142-1575043694:172084..172557 | Clytia hemisphaerica | exon |
| TCONS_00048274-exon-scaffold_142-1491911889:186425..187513 | TCONS_00048274-exon-scaffold_142-1491911889:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048274-exon-scaffold_142-1510915933:186425..187513 | TCONS_00048274-exon-scaffold_142-1510915933:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048274-exon-scaffold_142-1575043694:186425..187513 | TCONS_00048274-exon-scaffold_142-1575043694:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048274-exon-scaffold_142-1491911889:190070..190720 | TCONS_00048274-exon-scaffold_142-1491911889:190070..190720 | Clytia hemisphaerica | exon |
| TCONS_00048274-exon-scaffold_142-1510915933:190070..190720 | TCONS_00048274-exon-scaffold_142-1510915933:190070..190720 | Clytia hemisphaerica | exon |
| TCONS_00048274-exon-scaffold_142-1575043694:190070..190720 | TCONS_00048274-exon-scaffold_142-1575043694:190070..190720 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:172084..190720 + |
Blast
BLAST of TCONS_00048274 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 259.996 bits (663), Expect = 3.415e-77 Identity = 168/391 (42.97%), Postives = 249/391 (63.68%), Query Frame = 3
Query: 555 KIDGDDKKPNELVTFNVSGRKFITTSHTLYNFPDSLIGTSENRAKLKRTKDGEIFLDRHAIVFESVLTFYQTG-IFEPPSQVNQNIFVGDIKYYELVEEAMQSGLK--GF-DNKVIPMPERLVQRKIWTLLEYPDSSFMARIVSMFSLLVIITSIVTFCWETVPEYNTNKVNYDDLSPGKQLTI----KILDD----IELFCIVYFTFEIILRFVCSPKKWSFMKDILNIIDIVSILPFYVTL---IFSMEG------SVSIYXXXXXXXXXXXXXXXXSRHSNEMKILGIAVRESGREXXXXXXXXXXXXXXXSSAVYYAEDGVPGTKLVSIPGAFWWSIVTMTTVGYGDEVPQSIPGRLVGAVCAMTGILVIAMPIPIIVNNFTRQYQR 1664
+ D DD + E V N+SG +F T TL FP++L+G + R + E F DR+ F+++L +YQ+G P V ++F +IK+YEL EEAM+ + GF + P+PE+ QR++W L EYP+SS AR++++ S++VI+ SIV FC ET+PE +K + T+ I D +E CI++F+FE+++RF P K F K+I+N IDIV+I+P+++TL I EG + S+ LR +RLVRVFR+FKLSRHS ++ILG ++ S RELG+L+FF+ + V+LFSSAVY+AE + SIP AFWW++V+MTTVGYGD P +I G++VG++CA+ G+L IA+P+P+IV+NF Y R
Sbjct: 27 QADHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 417
The following BLAST results are available for this feature:
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