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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048275 ID=TCONS_00048275|Name=TCONS_00048275|organism=Clytia hemisphaerica|type=transcript|length=1916bp
GATATTTATCGAAAAATTGACACACCTGATTTAAGGTATgagaaaaagta
aattaaaggcTTAACCTTTTTACATTAGTCTGATGCAGAGTATTTATATT
AAATTTTTGATGCATTTAGCAGCATTTGGAAGTATTGCAACATTTTTGGA
GGGAGCACAAAAGGAAGATACTACAGTAGGCGCGAGGATGGATGAGGAGC
GGCGTTTGGTGGACGGAGGATCAAAGAACAAAAGCTATAATGATGATACC
AGAATCAAAATTGACGGAGACGATAAAAAGCCGAACGAACTGGTCACTTT
TAACGTCAGCGGTCGTAAATTCATAACAACCAGCCATACGTTATATAATT
TCCCCGATTCCCTTATCGGAACAAGTGAAAACCGCGCTAAATTGAAACGA
ACCAAAGATGGGGAGATCTTCTTAGATAGACATGCTATCGTCTTCGAAAG
CGTGCTCACGTTTTATCAGACGGGTATTTTCGAACCACCCTCTCAAgtca
atcaaaatattttcgttgGTGATATCAAATATTATGAACTAGTTGAAGAA
GCAATGCAGTCTGGATTAAAAGGATTTGATAATAAGGTTATACCGATGCC
AGAAAGATTAGTACAGCGTAAAATATGGACATTATTGGAGTACCCTGATT
CATCATTCATGGCAAGAATAGTATCCATGTTTTCTCTGCTGGTTATTATA
ACTTCAATCGTAACATTCTGTTGGGAAACTGTACCGGAGTATAATACCAA
TAAAGTCAATTATGATGACCTATCACCTGGTAAACAGTTGACTATAAAGA
TTCTTGACGATATTGAGTTATTCTGTATCGTCTATTTCACATTTGAGATT
ATACTGCGATTCGTATGTTCACCCAAGAAATGGTCATTTatgaaagatat
tttgaatATCATTGATATCGTGTCGATTCTACCGTTTTATGTGACACTCA
TATTCAGCATGGAAGGTAGTGTTTCCATATACTTTCTGCGTgccgttcga
ttggttcgagtATTTCGGGTCTTTAAATTATCACGACATtcgaatgaaat
gaaaatattgggTATAGCTGTTAGAGAAAGTGGACGCGAGCTTGGAGTAC
TTGTATTCTTTATTTTGTTGGCAGTACTTTTATTCTCAAGTGCTGTTTAT
TATGCGGAAGATGGTGTACCAGGCACGAAGTTAGTCTCGATTCCAGGAGC
TTTTTGGTGGTCTATTGTTACTATGACAACAGTGGGATACGGAGACGAAG
TTCCACAATCAATTCcTGGTCGTTTGGTCGGTGCAGTGTGCGCCATGACA
GGTATCCTCGTGATTGCAATGCCGATTCCTATCATTGTCAATAATTTCAC
ACGACAATATCAACGATTGAAACCAGCATCAAAATACTGGGAAGATTTTC
AAGACACGCGGAAATTATCCGGTGAGGGTACGGACGAAAACGGAAAAACA
GACCGGAAAACTAGTCACGTGATTGGATTATATGAAGTAGACATTAATAA
AAATGAAGCCAAAAATGCAACGGTGGTTAGTAGTAACCATAGCAATCATG
TAAATGGTAGCACAACCAAAAATAATGGTGACGTCACTGAAATCGGTTTA
CCGAATGGGAAGGTTGAAATCGCCCATACAGCGCTTTGAGAAAAAGTTTT
CGGGCTAAAGAGAGCAAAAGAGGGGCCAAAATACTTTTTATGGACAATAA
GGGTAAAAGACATAGTATTATGGGTACTATTTACCAAAATTTggggaaaa
gtgaaaaatattcaaacTCACGTTCGATATaaagaatatatttattttga
taactttttttataaacatttgaATTGATATATATTcgtaatctttaaaa
aacttttttttcgtttagattttttttggagGAATTGACGATGTCAAAAC
TTTCGACCTCTGCCTG Run BLAST on NCBI transcript from alignment at scaffold_142:174266..190720+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048275 ID=TCONS_00048275|Name=TCONS_00048275|organism=Clytia hemisphaerica|type=transcript|length=16455bp|location=Sequence derived from alignment at scaffold_142:174266..190720+ (Clytia hemisphaerica)
GATATTTATCGAAAAATTGACACACCTGATTTAAGGTATgagaaaaagta
aattaaaggcTTAACCTTTTTACATTAGTCTGATGCAGAGTATTTATATT
AAATTTTTGATGCATTTAGCAGCATTTGGAAGTATTGCAACATTTTTGGA
GGGAGCACAAAAGGAAGATACTACAGGTAATTTTCATcctgaaacctttt
gaaaaaatttccgatAAGGGGACCAAATTTCCTTAATTTCTTTGCTTTTC
ctccatttttacaaaaaatttccgATTTCTAAgaactttgtttacattta
cATAGCATTGCATTGCcctgatgaaaatcgaggtaaAAGTTCTCATCCTA
GTGAGGTTTTGAGACCTCAAAATCAGACCTGATGAAATTGAGACAGGGGC
GCGCTACTAGGTCATAAAAACTGGACTCAGGCTTGTCTAAGCCTGAGTTC
AAAGTTACTATGGGATGGGTTTGATATAACAAAATTCAGAACTTTGAATC
TTATACAGCTAAATTCGCATAAATTGAAAACTGAAATTTCAAATGGAtga
attctaaaaaatttatcATGTTGCAGGCGTCAAGGAGGGGGTCCAATGAA
AAATTGGACaaataaatttattcaaaatacggcgagacaaaatcataaaa
atcaatatttcgagaagtaataaagtaataaaggaagagtttttcaaaaa
gtgagtaaaaatatatattatctGATAAGGAAATATTAAAAGATGTGTTT
GATCTAggaattaaaatctaaattgaCTTTACTTTCGGCAAATTTTAAAA
TCGTTATTATGTGTTAAAAAAAGGATTATTTTCCGATTCTCTATTTGGCG
AAAAATTCTTCGAAATTCCAGGTAAGTGgctttttatgaattttaatttA
TAGAAAAGGGGAATTCTGTATAAAGAGcctaaaaaaagttcaaatttaaa
ttcaaatttgaaagaCGAAACAAATTAGTACTTTTTGTGGATATCTTCTG
CATTTTTGGACAGGATAAAGTTGTTAGATAAAAGAAAGATCTGAAAAGTG
CTCAAAATGACCGAGAGTGTAATTTGTTGTATGACTATAAACAGTTTCTG
TCATTAAGATATAATACACCTATCGCAACCCTTGGCGCGTGTGAGGACAC
TGGTAacgaaaatacaaggaaaattcTCCCCGAGAACGGCATTGAAAAAA
CAAGTGTAGAAGAGCTCTTGTGAAAAATGTAAGTTACATTTAAGCGAACG
TAAATATCAAAGTTATTCTCGAATGCTAAAAGTACTTTGCACTCTACCGC
AGAGACTCGGGAAAATGCCTCTAGGCGGgaatttgcttgttttttttatt
aagtTCTAGACTAAAAATGCCGTGCACCGAGAAAAAGTGTctccttgtaa
attcattaccaaTCCCCAAAGAAATCGGCTAAGGGTTGATAGGTGTTCAA
ATAACCGATAAGGATTGGTCGcaaagaatacacgttttttttaagaacat
tcaagatttttgaagtcttcggatgttcttaacttatttaGTATAAAGCT
tacgaatgttcttaacatgttctctattttcaccattttcttaagaaaac
gggtgtttcagagtcggcaaagccttaaaatgttcttaactttttcttaa
catttcggccatcgaagcctgatgttcttttatagtttgttcttatatag
tttgttcttataaaaaaaacgtgtaatctaaCTAATGAAGAGTGCTAAAA
TAGGGCCTGAGTATAAAGCTATTTGATCCTTTTCACTTTGTCCCCTAAAA
TCTGTCGTTATAAATTGGGCGGGGTAGTTTGAAAAATTCCATGTTAATGA
AATGGACagcttttgaaggaaaaatataaaaaaaatcatggaaataTTTT
TGACCTTATTCACTGAAAAATGTAGTTTTTTAAGGGACCATTTTACTTGT
AAAGGcaaattatttatattttatagtttagaggaaagaaagaaaattag
gGTCTTTTTGGGCTTTTGCCTAATTTATTCCTccttttaaaaagtgatag
gTTAAACGAAAGAACTATATAACTGTTTAAATATTTATCCTggtgaaaaa
aatctttttggttTAGAATTTTCATGatggtttttttttatttgtttttt
ttgggggggcaATCAATAAAAGCATTTAATTATTGTTAATCTCATTAAGG
CCTAATCGCTATCTGTTATTTGCTCTTTTTCATGAGAATAAACCGATTCA
GCATAAATTTATATGAATTGATATAGTTAAATCATTCAAAATCACCTGAG
GGGAGTCTTCTAAGTTATTCATCCCCTTAAAGTAAGCAAGCCTATatgaa
ctaactttttttgtttcatctcAAATCAATGTGCAATGTAGTATTGGNTA
AAAGCATTTAGTTATAGTTAATCTCATTAAGGCCTAATCCCTATCTGTTA
TTTGCACTTTTTGATGATAATAAACTGATTCAGCATAAATTTGTATGAAT
TGATATAGTTAAATCATTCAAATTCACCTGAGGGGGTCTTCTAAGTTATT
CATCCCCTTAAAGTAAGCAAGCCTATATGAACTAACTTCTTTTGTTTCAT
CTCAAATCAATGAGCAGTGTCTATTATAGTAAACCTGATAGAGAAAATAT
AGCGTGAAAGTAGATGAAAATGTTAGATAATTTTATTAGTATGGTCTTGC
GGTCAATCGGTAAAGTCAGTAAATCTTTTAATGTGGCATAAAATCTAGAA
ATTTTTAGTCACACATGAGTAAGAATATAAGCGCAAACATTGTAGTTAGC
TAGATAACGTCCAGAGAAATTGAGAAATTCAGCCATGAGTGTTATGAGAG
TTTGAGAAAGCAGTGAACGAAGAGGATCCAGTTTCAAAGGGAATTATTCA
GGTATcaggtaaaaaataaataaaaaacttccACTCTGCAGGCTCTTTTT
AATAACAAGAAAGTTTACAGCTATCCGTTTCAGTGACCAAGTGGTAATAA
GGATAGAAAGGgtgaaaatttggtaaaatgtgAAGATGGTCAAGTGGACT
AAAGTCTGtcacaaaataatttgcagttgagacaaaaatggctttagctt
ttgatagaatttgaatcaagttgcgattttgtccttgttgaaaagatatt
tgtgagtgtaATATTATCAagccaaaaaaaaatgaaaaaagaaaagaaaa
tgaaaatgaaaaatgaagaagaaaaaaatctactcattgtagaaatgtgg
tataattaccatttttacAGGAGTGGTTCTTCAATCTTATATCATCATcc
ctgtgaaaaaaattttcaaaaatattcattcaatcaaaagatatctaaca
aagtttattgctggttgactctaagtagtaaaaaacgacaaaaatcagcc
ttttgtcgatcaaccaattcaaattctatcaaaagttacagccattttcg
TCTCagctgtaaattattttgagacagactttagtgtaTAATATTTCACT
GGGGACGACATTTTGGCTTATTTTCCAGTGGGATGGACTTCTCACAAGGC
CTTATCGTGACTCTTTTCACAAAACTTCCttagcattcaaataggtaaaa
taaTTTGCCACCTTAATGTTGAATCTTGAGTTCAATTAATGAAGAAAATT
GACCCTACCGGGCAGACTTTTAAGCTCAACGTGTTAAATGTATAAACATA
TTTCCCAAGAGGTATTGAAATTCACACGtgattgaaaattgatccagaag
ataaaatattttgtccgACCAATAATAAAGGTGTGATAAGAAAAACTTTT
GATCGATAAAAACCCTCATCGGTGATCaatatttccttgttttttcGAAA
TCGATGATGAGCTACTgtttgtaaaatttgaaaaagagatcacttttttg
aaaacatgaacaaactttaaaaaaataatttgagtaAGATGTAAATTTTT
TTAGGGACTTTCAATCGCAAGAGAATATAGGCTAGTAACCACTCAAGAAC
GAATATCATAATCAGTGATGGATCTGAGGGGGGGGCTCAAAATTCATGAC
ATGGATTCTCCATTTCCTTATAAGGAGTATGGGAAAGAGGAAGACTTCTc
ctttataaattttgaaacccCTTAGTTAATCGTAGAAATTCTAGCGAGAA
TAATTTCAGCGtcttagcgagttttccctattttcgctaaaataaatctt
gctaaaacacgccgaatcgacagatcgctaaaatttatccacgcgaaatt
tctggttatatcgccttgatacatttttatcaataggaagagtttcagtg
caaagaaatgctagaaaacgaattcagtcaataatgtaatacaagtattc
gctaaaatttatccacgcgaaattttttgaaatcgtgattcgctaaaata
aatccaaaaaaaattacgattttcctgactcgctaatatacgctaaactT
AGtgtcgctaaaatttctacgattaaagtaataaaaaagtgTTTCATAAC
CTGCAAGGCATTTATAATTTAAGTTTGTGTTTAACAGATAGATGATAGCT
TTTAGCACTCGAAGAAGATTTGAAGATCTAAAAATTACTAAGTTAAAAAA
AGGTTATCATTAGAAGCAAAATTAAATTTGTTAATCTTTCAACCataaaa
atggtatggttttcTTTAAGTTAGTTTAGATTGAGAggataataaaataa
taaatcgCGCAGTGGTTATACGTGCTGTTTAATTTGTAAATGTTTTCAGT
AATGAGTATTATGAACAGTGAAAGTTCAAGGGAGACATGGCGAGATGATT
GGTGGCCTGCCCTTCATAATATAATCAAAACTCTACAATCCCATATTTTA
GAGATaattcaaatcttcatttttacagatagtaatttttttggaaggtt
atataatgtataaaacttgaaaaaaattaaagtttgtCGGAAAGAGTGCA
TCTTAAGTTTAAAAGTAAAATCTCTCCTAATTCTTAATCAACACACTCAA
ATAGTCAAATATACTAAATAACTCAAATATCATTATTAGAATTTGAGAAT
CGCCACAAAATTAAtgaaagatgatgatgaatacATCAGGATTCACAAGT
ATTCAACACGCAAACAGGCTAGTCTTTTCAAGTGTACTGGCTAGACCTAT
GCCTAGTAAGTATATTATTTTGTTTATACAACTGCCTCTGTTTCGaacct
ctgtaattcgaatctttctgcaaTTCGAACGAAAACATTGGTCACCTCAG
CTGGAAAGTAGCGATAAATTCTTTCTTGACCCCTCcaagctgacacacaa
cgttgtttcaacgtttatttaacgtccacaacgtccaaataacgttagat
gaacgttgaaacaacgttgtgtgccagctgggcttgaagatcgaattatt
GAGAGTCAACTACCTTTGTACCTGGAATAATTTTTCCCGTCTCTTCATAG
AGTCTTAAGCTGTGTTGCCTCTCTAATACATAGTATATGAATTTATTTGG
AAATGACCATTTTGTCCTTAAATGAACGATAAAGTGGACTTTCTGATGAG
TTCTTACTTTGGAGTTGGCTGCACTTGCTAGAACTAGTTTTGAACTGCCA
TCAGGTCATATACTGTATGCAAACTTCAATGTGactaaaaaaagagaaaa
aaaaacatttaaaggcttGTATAATGGTtacaaaatctttcttttttaaa
agctaAGTTTCGCTGTGAGGAGTGACTCCAGGGGTCGATCCAGCTTTAGG
TTTACCAGCTCTGTGTCTGCGTCTGTCTGTCTCTGTGTTTTTTAGGTCTC
GTTTAAGTAAGTCTGTTCTATGAAACGTCAGGGAGAAAATCTCTGGGAAT
AATTGTCCTCGAATTTGTTGCGTGAGCATGTATGGTCAAACctataattt
cattttctcttgTTGTTATAATATGACAATTAGTGGGCAATGGAATACAA
GAAGCCATCCAAATGCCTCTTGTCTTTTGGAAGTGGTTGCTATAGCAAAT
AAACTCTCCCATATATTGACATTCAAAATAAAGTCTTCAAAAATGATCTC
AATTCTATGTATATGCGGATGGTTGGTTAAACATAAGGATATATGACCCA
AAACACATATAGAACATTTAAAGCAAACTTTGCGAGTCGTATCGGAGAAA
AAACGAGCTCTCATCGGACGTTTTTGAACGTACTCAGAAAGATTTTTATT
GCAAATTATGAGAGTCTGTGTGAAGCAGATGCCATATTGATGGTCCAATG
TAGAGAGAAATcttaatgtttttttatgaattttacggtcaatttttttt
tgtgtagTTGATGTAAAGAAATGGAAAGGAAATTTTATTATGAAGTTTAA
ATCGCGTATAAAAAGCATTATAAGGGTTTGATTGAAGAAGGATTTCTTTT
GCCTGAtttataactttttttgggagaagaagaaaacgaatttAAGAAGA
AAAGTTCAAGAAGGTGGATTTTGTGTAAGATGTTCAAGAGAAAGTGGAGA
AGAGGTACTACtaactaaaaaaaataattctgggGTCATTGAATTTGTTA
TTTGTTTTCTAAGATACATATCAATAATGCTTTTATAGATGGTAAGGTca
acaggcccggcggaagcggggagactggggagacttcagcctctccactt
ttgagcaaatgagatttttttctcaaattcttaGCGAGTTTTATCTCATT
TTTTGAGCagtcagcctccccacttttacggttgctCCACCGGGCTTGAA
AGACGTGGTGATTTGCCTGTTAGTTAATATATTGGTTGTATGGTTGGATT
TTTTAtctttatgttttctttatGTCTTGCAAAAATCAACAACATATTTT
CATCTAAATAAGCTTTAGTTTAACGAGCCAGTGATATTCGTTGAcaagtc
attgcattgatgtTGGACAGTAGTGGTTCATGTAACGTTTATGAGAACAT
TTACATAGATATGTGGAATTCGTGTGCAACTAACAACGCCTTAAACAATC
TCAGACGTCAATGtaattattttaaattattatCTCGATGAACTTTCCAT
AATACACTTTATCTGATgatttcaattcatgatattgtGATAATTGTGTT
TGCcacaaattttgaattcaaacaatAAACCTGACCTACCTGACTCATCG
AGGTAAAAAAAGGTatcctgaccagcggcacatccctGTACCCCTTTTTA
CCCAAGCACACCCTCCCCGGATGTGATAGAAGTCTGGAAACACCTATTTA
CCCTTCCCACAAATCTTCCAAAGGAAAGTTCTAAACTTGATCCAATTTTC
CcacaaacttttttccaaaaaggaaagaaagcgTCGAACAAACGGTGTAc
atttaacatctttttaacatCCAtgacgttagattaacgttgaaataacg
CTTTGGTTTCTGATAAAGAGTTTACGGGTAGTTGACAGCTAATCAGGATA
TATAAGAAAGTATCAATTTCGTCTGATTAGGTTACATGATAGTATCAATA
GTATCAATTTCCAAATCTTTGGTGGGAGGGTCAAGGTATTaagtgaaaac
tttttaaaaagtataaatGTCAATAGCTTTTGTGTCAAATTTCTGATAGA
AAGATTTTCAATATTGAGGAATGTtctcaacctcgttccctgcgtattat
tagcttttttatgcttactgatagcgctagataatagggttctctggcgt
caatcagtagcgtaaataaagcctgggatacacggggacgaggttggaaT
GTTCTTAGAGTCTGTCGTGtaaaataaaaaggaattttgaaGAATTATTC
AAAAGTTTGATTCGAGTTGTTAGTTTGTGGTTTACAATGCGCTTAAAATA
CGGTAAATAACCATTTAAAATCTATGATTGTGATTATCACGGAATATGTA
TTAGAATTCCTGCATGAAACTCTCCGCAAAAGCGAATTTTGGCTTTCAGC
TCTTTACTTTggctttacttttttaattgtGTCAATATCTTATTCTTTTT
AAATGCTTTAAGCGTAGTAGTGAAGCGGTTATAAACCTTGATTCCCCTAT
GTgaggtcagggttcgattcTCACTCGGTGCtatgattcacttggcaagt
taATGTACCTTCGCTCGGGTCGACCCATGCCTTGCGAGGGGAACTGGGTA
CCGTCACTCTGATAAAAGAGTATGGGGAGTATGTCAGGCATTTCATGAGG
TGTGGTGACGATACTCATAGGTTCAACACATGCGAAGATGTATGTCCTCC
CGTGTAGTTCGGGTATCGTCGTCTATACACCAATAACTCTGCCTTGTCGC
GAGCGTAGAGTTAGCAGTGTGTGGTAAGCGTGATAATTTCCTAGGGTAGG
TATCTATCCAGGGATAAGGCCCATTTCGGATAATTTTGAGGATTCGattc
tctctttttctcttctttgaaTGCTTTGGAGAGTTAGACCTCAAACAGCT
CCATAATAACTTTTTTAGGGAACTTTTGATGAGCATTAAGCAGAGATATA
TATATTAACCCTTGACTTTGCGCACTGTAGCCGAATGCTCTACCTTTAAA
CTACGGATTGCTGCACTGACAAGAACGTACTCTTTAAGCAAAAATAGGCC
CTGGTGGGTTTCAATTTCCAACATAATTTTGACCCTGACAGAACAAATTT
GACAAATCAAgtcaaaaaagtaaatattttcttccaaTTTATGACAAAAG
TTGCTGCAAAGGGACGATGACAAGCGAAGTGTTCATGTATTCATATTTTA
CACTTTAGaatggcacgccagtcgggctggaacggtatcaggCGGGAAAA
GTGaacgtaggagttaggtaagcgtaaaaagaaattttgttggcggcaag
ggctgaaagtaGTCTCTCACCAACTTTTTCTCGTTCTCCTACGTAGCTCC
TATtgtagcaaacgcccgccgcccgTCGCCTTTATGTTTCCAccccctct
gacatgattaattaacagactagtttgctagtctaattTTACCTTGATGA
TCTTTTTACAAATATGTaaaataatattgaaatttCGCCATAGTAATAGA
CGGCCAGGAGGTCATTAGCATTTTCAACAATAACATTTAAATTACCTTCC
ATTAACGTTCATGATGATGCAAAGTAACTTTGATATAACTATCAATTAAA
GGGGAATTCTGTGGTTCAAAAACGAAATCGATTTTAAACCCGCAAGAATC
GTGTCTAACTTTTCGACCGGAATTGGTCacttttctaccatttttgcAAC
GGACGTGACTCacaaatagatcttatcggagtttttgatttttcttaaaa
agcgATGCATATTGTGGGATtatttcgggagtattacaaaaGAATTccag
agatttctattgtaatactcccgaaacaatcacACAATACatcgtttttt
tagaaaaatcaaaaactccgataagatctattgtgAGCTATTTTGCATTA
GAAGTATGAACCGCAAAAactgtttttgaaaattaataaatacctctaca
aaaaaagtcaaataataATAGATAGCTTGCGACGGCAACATGGTTTCTGC
AGCCTACGGCGATTTTTGCAAGACATTTGCGTAGTTTTCAATAGTAAAAA
GAAGATCGCAAAATAATATTTAATTAGCTTGAAAGCAACGTTTCAATGAA
TAAGGTTCAATCATAATAACACCCAGAAAATACCtccaagaaaaattatt
tcacatTGATGAGTTCAGTTTTTACAGCTAATTCTCAAAGTTAAATATCC
CGACGGGGGAGAAACTGGGGGCGGAATATGTGTGCAAAGCATGTAGCTAC
TTCAATGTGACTTTTTTCTGTGGGATTGATGATGAATTTTGAGAAGTAGA
ACAGTCGAAAATATAATTAAACAGTCAAATACACTGGTCTAGTGGAAGGC
ACTTTTCGTTTTGTTCTCGTTTAGCATGTATAAATGTGCCGTAACGCGAG
GGGTAGCTGCCAAAAATTCGTCTGTCGTCAAAAAATATCTACCAATACCT
TGCTATTAGTTTTTGACGAAGAACACACCAAGGCTTTGTTAGTCCAACGA
CGGCTCACGgtccttaaccctttaagtaccacggccacttttttctaagt
tttttaaagaaaatcgctgcACGGActtgcctgaatgatagaaaggtgcc
cagtggtaaaactccAAATTAATTCGgtagaggacagaatcaagtaaacc
AGTAGGGCCAattttggaggttcttgaatcactcattgaccaaaaatggt
caaaaaacggtcaaaatcttaaaaaagtcgatttttgtcaaatctttgca
ttttttcgactttttggcttaaaatctcgctggaaagattcactttaaat
tttttttcttgaccaTGAAACCCAACCCAATTCCTACgaattagaccaaa
aatgatgatttctaactcaaactggccATTACAGGAGGATAGCCCATGTC
TAGTATACTCATCATTGGTACTTAATGGGTTAATTGGTTAGTTTATCcgg
aaataaaaatttaggGGATTTCCGCTGGAAATATTGGACCAAACAGTCAT
CATTATGaatgaattaaattttaaattgcCTCGCAACCAGTGTTCATATG
ACtttgatacaattttttttaagaaactagttttccCAAGCAGactcaat
gtttcttaaaaaatcggccttttgagccttaaatgtttctcacatgtttc
taaactttttgacataatcagcctcgtGGAAgtctggattggaaggttct
taaaaaaaaactgaattaaaaaatttaggcattctgagcctcatgtttct
taaaagtgtttcttgaaaaaaaaaaacgtgtagttttttttcttaattaa
tttcttaataataaaattttgcCACAAAACTTTAATCAGTTGTCATCATC
TCTATTTGAAGGTTTGGTAGGGAGAAAGAATTtttcatttgaatattttg
aaagattttttgtgACACGCGTGGTTTTAACAAACGTAGCGTATAGGGGA
GGTTttggatttgtttttttttatttgattttcaagaTGCATGCGGGCCA
AGCAGCAGGTCAAATTAATGTGGGAGAAGTACATATACATCCTGCCGGTA
AGACAATAATTTGGATATTAGAGATTAAACGTTGTTCAACTATAAATTAC
TTTGGTTCGATATAACGAAATGATAAATACAACATCCAAGTTTAAACTTC
CTTTGCAATGGCCACTATTTTTCTCTCTTACGCGGGAAATGGTGTTATTT
CGAGTTTTCTTAGCTGGTGAGCAAGCGGAACCTACTACATGTTAAGAGAA
TCATATTTTTAAGCTAAACTTAACAGATGCTTGGATCTTAGACAAAATAT
GATTACGTCAGTTGTATCATTTCTATAGAGCTCAATAGATAATAGCAAAA
AGAAGACTTACTTGTCATTTTCTTTATCCCAACATGCGATTTTTGATCAC
ACGGGGTCAAGGAAATATCCGTGGTCGTCTGGTAGAGGCAAAGACCCTCC
AAGGAAGATAACGCTCTTAAACTACATCACATTTTGTTGTCTGGTACAGG
AAAGCTTGTTTTATGCAAGGATAAAATGAATTCTATGTATGCAAATCGTC
TAACGCATGTGATATGTACCTGAAAAACAAGCAATgataacaaaattgaa
aataaattctagAAATATTTGTCGGTAGGGGTTGGTAtttatccttccaa
gaagttttaaAGAGggaaataacttttatagatcCTTTATCTTGAACAAA
TTAAACTTTGCGCTCGCCAATTCAGAATGATGATATTGCAACACAACCCA
TCCGACACCAATCAATCCAGAATTGATCGTtatccaaaaaaaatattttc
agtaattaaagCAATCTTCTTCAGTTAGTTAAAAGAAGAAGGACAAATTC
AATTGTTGGATATCAGTTTGTGTCAGCTCTAAATTGTGTCTTGACATAGT
AAACAGGGGTTATTCATCTGtgtaaaaagcaacaaaaatctACTTAACAG
ACGTTTCATCTATCTAACATCATACTAACATCCAAATTTATTTCAGGTTA
AAAGCTGGTCTGAAAACCTTATCTACCGGTCAATTAAAAggtaaaaattt
atcatttcaTAATGTTACAACCTagaaactaactttttttctttctcttt
caaTTTTAGTAGGCGCGAGGATGGATGAGGAGCGGCGTTTGGTGGACGGA
GGATCAAAGAACAAAAGCTATAATGATGATACCAGAATCAAAATTGACGG
AGACGATAAAAAGCCGAACGAACTGGTCACTTTTAACGTCAGCGGTCGTA
AATTCATAACAACCAGCCATACGTTATATAATTTCCCCGATTCCCTTATC
GGAACAAGTGAAAACCGCGCTAAATTGAAACGAACCAAAGATGGGGAGAT
CTTCTTAGATAGACATGCTATCGTCTTCGAAAGCGTGCTCACGTTTTATC
AGACGGGTATTTTCGAACCACCCTCTCAAgtcaatcaaaatattttcgtt
gGTGATATCAAATATTATGAACTAGTTGAAGAAGCAATGCAGTCTGGATT
AAAAGGATTTGATAATAAGGTTATACCGATGCCAGAAAGATTAGTACAGC
GTAAAATATGGACATTATTGGAGTACCCTGATTCATCATTCATGGCAAGA
ATAGTATCCATGTTTTCTCTGCTGGTTATTATAACTTCAATCGTAACATT
CTGTTGGGAAACTGTACCGGAGTATAATACCAATAAAGTCAATTATGATG
ACCTATCACCTGGTAAACAGTTGACTATAAAGATTCTTGACGATATTGAG
TTATTCTGTATCGTCTATTTCACATTTGAGATTATACTGCGATTCGTATG
TTCACCCAAGAAATGGTCATTTatgaaagatattttgaatATCATTGATA
TCGTGTCGATTCTACCGTTTTATGTGACACTCATATTCAGCATGGAAGGT
AGTGTTTCCATATACTTTCTGCGTgccgttcgattggttcgagtATTTCG
GGTCTTTAAATTATCACGACATtcgaatgaaatgaaaatattgggTATAG
CTGTTAGAGAAAGTGGACGCGAGCTTGGAGTACTTGTATTCTTTATTTTG
TTGGCAGTACTTTTATTCTCAAGTGCTGTTTATTATGCGGAAGATGGTGT
ACCAGGCACGAAGTTAGTCTCGATTCCAGGAGCTTTTTGGTGGTCTATTG
TTACTATGACAACAGTGGGATACGGAGACGAAGTTCCACAATCAATTCGT
AAGTAGAATTCCTTTACTTATCGCcaggaggggggggggcactcatatgg
ttcGACCTacagtatgtgccgcccttaagggtaggtttttcgaaatgcac
tgtaagggtgtacttttgatagagtgcactacaaAGGTCTTCTTTATGCT
GGATACACTGTTagggtgtgtttggggactACTGAATTGTAAGTCCGGTT
AGtaagattttgatttatatCTTTATAGTTGTAACtcgcacccattttga
tttgttttgcacattgtgccgacatctcaggctcattttcaggtggcttc
agcaaaataagatatgaaatcaaactacactgtatgtaagggtcaaaaac
attcagtaaaatgcactgtaagggtaccttttcattGCTCAAtggctgca
ctgtaagggctcgattttgaaaaccatttttttgACAGCACACGCCGTTG
TTTAAAAATCGAGTGAATAAATAATCTAAAATGGAGTCCAGGATGTTGTT
TGTTGTCAAAATTCTCATATATGTTTAAAATATCACCGGAGTTTGACCTA
TTTTCCCTTgaattttgctttatttttctgTCGGGTAATGAAGTTGATGT
TTTCAGAGCTTTTTACGCAATTTTAAAAAGGAAAGCGGTTACACTAGAGA
CTCAGAGAGTAGATTATGCTGGAGGATAAAAAGAATATATACTTCTGAAC
TAGATGAGCTAGTAAATTGCATGAAAACATTTCATAGACAAATTAGACCT
CATTTGATAGTGGTGCCAAAAATTTCTGGTCCAAACACAATTAAAGCACA
CTTCTCACTTTAAGAAAAATTCCAGTCACTCTATGAAaccacaaatatct
tttttggaatttttccaaACTATCTACAATATCTATTGCTTACCGCACTA
TCGCTCTTATTAAGAACAAATGATAACAGTCTTTTGTATTCACTTTACCA
ATTTTCAGATCGTCGCCAGCGAAAAAGAAAtgaacttaagggctctgacc
atagtccaaaaattgattttggtatttgaacataaaagttacatttcagg
ttccttaacacttttaacaaagaaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtgcgcaga
gtcatttacagatttttcttgtaacaatgagaagacaatggatctctctt
gggagcaacgagagaagttaatccacctattctaatccgttggtcaaaag
ttatgagtttttttaagcaaaatccagatgaaaaattgatgaaaaaccac
tattttgaagatttcgagacaaacaagcatttacaaaaattttccgcaaa
aatttttattgttcggtaaaagatacaccatctattgggaaaagattttc
aaaatgttttttcttcgccgaaactaagctcttcaaagttgaaatactct
tcctcgcaaaagtcttcattttcttcttcatcaaattttttcaatgcaat
tcttgaattttcagattcaggaatagtttgtctaacagaaaatgtatgac
atgccatagttttattggttacatcagtcagaaaacacattttaaacacg
gcaattatgaaaaattcactatggtcagagcccttaataggggtggaaaa
taaaattgatgctctctaattcgacgttctactattgaGACGCACCatca
ttcgataatattgaaaggcACCGTCAACAAGATACTCTCACTAACGACGC
TCTGCTACCCTTATTCTGTGAACATCcaatttctcttgaaaatctACTTA
GAGAAAGTCGACTGTAACTTCAAACAAATAAAAGCGAAATATCGAACGAT
TACAAATTTTCTACTTAAATAAAGTCTTAAAATTGAGGAAATATAAACTT
AAAATTCCTGAATTGTTTAATATTTGTCTCAATTTAATCGAGAGTCCTGA
TGTTTTGTTAAATTAGAAAGTTTCTAAGGTggaattctttttgttttttt
acagcTGGTCGTTTGGTCGGTGCAGTGTGCGCCATGACAGGTATCCTCGT
GATTGCAATGCCGATTCCTATCATTGTCAATAATTTCACACGACAATATC
AACGATTGAAACCAGCATCAAAATACTGGGAAGATTTTCAAGACACGCGG
AAATTATCCGGTGAGGGTACGGACGAAAACGGAAAAACAGACCGGAAAAC
TAGTCACGTGATTGGATTATATGAAGTAGACATTAATAAAAATGAAGCCA
AAAATGCAACGGTGGTTAGTAGTAACCATAGCAATCATGTAAATGGTAGC
ACAACCAAAAATAATGGTGACGTCACTGAAATCGGTTTACCGAATGGGAA
GGTTGAAATCGCCCATACAGCGCTTTGAGAAAAAGTTTTCGGGCTAAAGA
GAGCAAAAGAGGGGCCAAAATACTTTTTATGGACAATAAGGGTAAAAGAC
ATAGTATTATGGGTACTATTTACCAAAATTTggggaaaagtgaaaaatat
tcaaacTCACGTTCGATATaaagaatatatttattttgataacttttttt
ataaacatttgaATTGATATATATTcgtaatctttaaaaaactttttttt
cgtttagattttttttggagGAATTGACGATGTCAAAACTTTCGACCTCT
GCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048275-exon-scaffold_142-1491911889:174266..174441 | TCONS_00048275-exon-scaffold_142-1491911889:174266..174441 | Clytia hemisphaerica | exon |
| TCONS_00048275-exon-scaffold_142-1510915933:174266..174441 | TCONS_00048275-exon-scaffold_142-1510915933:174266..174441 | Clytia hemisphaerica | exon |
| TCONS_00048275-exon-scaffold_142-1575043694:174266..174441 | TCONS_00048275-exon-scaffold_142-1575043694:174266..174441 | Clytia hemisphaerica | exon |
| TCONS_00048275-exon-scaffold_142-1491911889:186425..187513 | TCONS_00048275-exon-scaffold_142-1491911889:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048275-exon-scaffold_142-1510915933:186425..187513 | TCONS_00048275-exon-scaffold_142-1510915933:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048275-exon-scaffold_142-1575043694:186425..187513 | TCONS_00048275-exon-scaffold_142-1575043694:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048275-exon-scaffold_142-1491911889:190070..190720 | TCONS_00048275-exon-scaffold_142-1491911889:190070..190720 | Clytia hemisphaerica | exon |
| TCONS_00048275-exon-scaffold_142-1510915933:190070..190720 | TCONS_00048275-exon-scaffold_142-1510915933:190070..190720 | Clytia hemisphaerica | exon |
| TCONS_00048275-exon-scaffold_142-1575043694:190070..190720 | TCONS_00048275-exon-scaffold_142-1575043694:190070..190720 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:174266..190720 + |
Blast
BLAST of TCONS_00048275 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 259.996 bits (663), Expect = 4.258e-78 Identity = 168/391 (42.97%), Postives = 249/391 (63.68%), Query Frame = 2
Query: 257 KIDGDDKKPNELVTFNVSGRKFITTSHTLYNFPDSLIGTSENRAKLKRTKDGEIFLDRHAIVFESVLTFYQTG-IFEPPSQVNQNIFVGDIKYYELVEEAMQSGLK--GF-DNKVIPMPERLVQRKIWTLLEYPDSSFMARIVSMFSLLVIITSIVTFCWETVPEYNTNKVNYDDLSPGKQLTI----KILDD----IELFCIVYFTFEIILRFVCSPKKWSFMKDILNIIDIVSILPFYVTL---IFSMEG------SVSIYXXXXXXXXXXXXXXXXSRHSNEMKILGIAVRESGREXXXXXXXXXXXXXXXSSAVYYAEDGVPGTKLVSIPGAFWWSIVTMTTVGYGDEVPQSIPGRLVGAVCAMTGILVIAMPIPIIVNNFTRQYQR 1366
+ D DD + E V N+SG +F T TL FP++L+G + R + E F DR+ F+++L +YQ+G P V ++F +IK+YEL EEAM+ + GF + P+PE+ QR++W L EYP+SS AR++++ S++VI+ SIV FC ET+PE +K + T+ I D +E CI++F+FE+++RF P K F K+I+N IDIV+I+P+++TL I EG + S+ LR +RLVRVFR+FKLSRHS ++ILG ++ S RELG+L+FF+ + V+LFSSAVY+AE + SIP AFWW++V+MTTVGYGD P +I G++VG++CA+ G+L IA+P+P+IV+NF Y R
Sbjct: 27 QADHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 417
The following BLAST results are available for this feature:
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