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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048280 ID=TCONS_00048280|Name=TCONS_00048280|organism=Clytia hemisphaerica|type=transcript|length=3589bp
GAAAGGCATCAAGCTTTAATTCTTAATTCATCAAGAAGATTGATCAAGAA
AGAAATTCAAGATGAAGCTGTTTTTCCTCGTGCTTTCCTTATTGGTGGTC
GAACAAAGATGTCAAGTATCCGAACAACAATTCCAATCCGTCAAATCAAC
ATTGGCTGCACTGTCACGTCAAGTTATGCTCCaacaatttttcactgaaa
caCGTGTCCGTACTGAAGGTCAATCAGGTTTAAAAGTCAACCGACAACGA
AGCAATGGTTTAAAAAACTACCATATCAACACCCATACTGGTAGATCCGC
AGCTGCAATTCACGAGCATGCTAATAATGACCGTACTGTAGGAATGGGAG
AACTTACAGCTGTCCTTAATGGGATTGAATTTAAGACAAGACACAACGAT
TACCGATTGTACATGCCTCACCGAACATCTCAAAACTTCAATGCGTACGA
GAAAGTACCATTCCCTGATGTACCACCACAAGTCGAAGCTAAAGAAACCA
TCGATGAACAAATCGCCGAAATGAGAGAATACTTCAAAGCTTGGAGAAAT
CAAGATCCAAAACACCGCGACTATAAACCATACTTCAAAGCTACGTTGTG
CTACTTAGAAGGTGCCTGGACTGCATCAGCACAAAAAATTGACGAGCCTT
TTGCATCTGATCGTCATTTTGTAGATGCAAAATCATGGATGGAACTTCAC
GAGAAATCAAGATATATTGCTTACTCTGGAACCAAATCGCGACAAGAGAA
TCTCTCGTTCTTACCAACCAAAATTATGGGTTTAGTCAACGATACAATCC
CTAACTTTGCCCAATGGAATTATCGTATCATGTGTCATCCACTGAAACGT
CACTTGCCAACCAAACGATTGAGAGTTATAGAAGATTTATCAGCTCGCAT
GAGGAACAACAAAGACATCCTGAGACACGCTCTCTCACGATCTGCGCGTT
ACCAACTCAACACTCAAGATCAAGATACTTTCAGAGAAAGACCAGAAAGC
TGGAAAACTCTCCTTGATGAACTCATGGAAGAAATCCCTGGCAAAGATAA
TTATCAAGttgatTTGGAGGATGAAGGTTTAGATGGTAAAGCAATGCAAT
TGGATGGAAGTAAACTCAATGCTGGTTATTATCACAGATGGTTCACTATT
GGTGCAGATGCTATGGGATCGGTCAAACAACATCGTGGTTACAATGATGA
CTACATGTTTGCTGCTCTCAATACACAAGAGAAGATTGCCGGCGTTGAAT
TCaacaaatgtgtcaaaaataagGGAAATAAGGGAAAAAAGGAATGCCAA
ATGTTCAGACAAAAATGGTCATATGCAATCCCATTGGAGATCATCTACAT
GACACCGTTGTATAAATGGAATCCTTACAAATTGAAGCACCATGGTGACC
AAACAACTGCTAATCTGAAAATCATCAATGGCAACGGCAAACGAAATGGT
AATTGCGCAGCAGGCGCTGCCAAGGCTTATACTGGCATCAACAGCCGTAA
TTTCTACATGACACCTGCAGCATTCTACTCTGGTGCTTCTGTGGAGAGCA
GTGCAGCTGATACAGCACGTGGTGTTACGTGTGTATTGGATCAAGATGGC
GTCGAAAGACAAGTCAGAGCCGCTGGAACACACATTTTCCTACCACAAAT
CAAAGATGTTGGTGTTTTGAGAACCAGATATCCAATCTTTCCAGTTCACG
GTGAAGGATCATCTGTATGGAAAGAATTGAACGCTGTCAGAGAAGTCACC
ATGAATGAAGAACAATGGCAAAAGATGTACTGGAAAAATGCTGACCTCGA
CTCCGGTAATGAAGACACAACACTGTTGATGGGAGAATCAACCTGCGCAT
GCGCACCACGACACACCCATGAAATCAAATTGGACGCAGCTGAAGTACAA
ATGTTGAAAGGTGGCCATACTTTGACCAAGGAGTCTACCACAACTAATGC
TCATTTCCATTCAGTACAAATTCGATATGAGCCggacaagaaatttttct
atttcacTTCCTGTGACGCCAAATATCAATGCTGGGATAAACACGTCAAA
CAATTTGTTATCTCAGATAGttaaatacaatttttaatACTTGTGAAGTA
GAATGTGTTAGAACACACCCATATTTTATTAATACACCCTTCACTAGATT
CATTTATAACGTAAATATATAATACGCATGAGCATACatgaaaatgattt
gaaattcTTTAACTAAAAATACCCCTCTGAAATCTTTGTTAGTCATTCTG
ACATGTATAATTGTTAGGTACAGTAAACTCACGCTTATATGAGCTTCTTT
TTACGAATCTTTCTTATAATTTGAACTTTTTCTCATTTCCTTTCTGTGAG
AAACCTTCTCTTAAAAtaatactctctataattcgaatgtctTTGTAATT
GTAACAAATTAGATTCCcagttcgagttcgaattagcgaaagtCAACTGT
ATCACAAGTATAAATTGCCAACAACAACCAAAGAGCTCTCTGAAAATTAC
CGTCAGCTTCTATATCTCTATGTTTTCATCATGGTAATTATAGGAAATGT
CTAAATGCAGTGTTTCTCAACCAACCATGTTCTCCGAACGGGTTTTCTTC
TTCTAATAAAGATCACGTGTATGATCACGTGTTTTTCATATccttaaaat
tcatgaaaatgacTCTTCTCAATGTCCCACGGGCTATCAGTTATTCTCGC
CATTCTACTAGACATTCGAACAAGAAATCTTTACAGGTACCTTTATAGGT
TCAAATGGAGCGCTTCaattctattttttctttttcaacaaaatggcagc
tttttcaggattttcttcAAGTTCATGCATCGTTTTCATGTCACGTTTAG
CGATCAGATTTCGACTTCGTTTTATTCTTCTTTGTAGAAGTTCATTATAT
AAATCCCACCAAGACGCCTTATCAGTATGATTTGTCACTGATTTGATAGC
CTTTCCAGTTGTAGCACCATGAGGCACTAAAGTCTTTTTAGTTAAAGGTA
CGCGTACCGTAAAACGAACCAGCTTCGGTTTATCAGCACAATAATCACGA
ACATAAATGACTTCATTTTCGTCTAATTGCCAATTATAAATCACAAACTC
ATCTAAAAATCCTCGGAAAGTCTCGTCACCCACACTTGCTTCGTTATCCC
AATTTGTCGGTAAATCTTCTCGTTTGTCGGGACTTGCTATTTTCTCGAGT
TTCAAAATACCGTTAACGAAGATTTTGCCGACtccattttcattattata
GGTGGCCGTCAAGTGTGTCCATAAGCCCTCTGgcactaaaattttatttt
gagacCACATGTCAATTATTTCAGGAACACTCTCAATATCGGTACCAATG
GCAAACCGTACACCGCCATCGATGACTTGTAATCGGTATCCAATATTTCC
TTTATCACTTTCAGTAGTGAAAATATTATGAACACCACGTGTGCTGTTTA
ACATCACCCAGACCGTGATTGAGATTTTGGATGTGGGTAAACCACGTACT
GGGACACGCTGAATATCGAGTTGAGGGTCCGGACCTTGAGTCAAATCCAA
ACAATAACCACATTTGCCGCAATCTTCTTTCTGTTTCGC Run BLAST on NCBI transcript from alignment at scaffold_142:194624..201562+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048280 ID=TCONS_00048280|Name=TCONS_00048280|organism=Clytia hemisphaerica|type=transcript|length=6939bp|location=Sequence derived from alignment at scaffold_142:194624..201562+ (Clytia hemisphaerica)
GAAAGGCATCAAGCTTTAATTCTTAATTCATCAAGAAGATTGATCAAGAA
AGAAATTCAAGGTAAATAAattatataatatatttttttgtctaAAGTTT
TACGGTAAGGTCTGTGggaaataactttttttaagtcATTTCGAAATATC
ATTAGCCGAGAAAGTTTATCGACTTCTCTTTCTGATAAGAGCCTGATTGA
TGGGAAAGTACTAATCCATATAATGAAATACTCAAAACTTTGCCTCTTAA
ATTACAGCTGATAGAATCATTGGGACACTCttccaaaagaaaaatcaaat
tatgtTTTCATATCGATGGGAACTCAGTAGCGTAGATAggaggaggggcg
caaaatttgtgtaggggAGCAGATTTGTGTGGTACTGTAATGATCTTTTT
ACATTATAAatagataattactgtgtcataaaaatctgctctcttaCAAA
AAAAGTATGCACCTCTGCTGGCTACGCTACTGGGACTAAGGACAAATGGG
GGTGAAAAGCCACGCTTTTGTATGTTTAGTTTAGGGGATACCCGTCTAGT
TGTAACCTTATGTATACACGGTGACATTATAGTTAGAAAGGGAACATTCA
TTAAACGATGCGATATAGATTAATAGGGGAactcatagtgtcctcccccc
cccctttataaaaaGGGGGGGAAATCAGTTTTCCACTTTTGAATGGGTGA
GGGggggaaatgaaaatttgaatagtaaagggggaaaaaaaagagggggg
aaaacatcgatagttggcaaatttggtggggggaagtgtgaaatcacttt
aattttatctcagcaaccaaggtcagtccacatgatatcatgtgattaga
tcatgattgaaaattaaccaattttcgttctatttatgtctagtattcct
tttgcagctaAATTTTACGtctgtgtcaggttgaaatttgagaaaacata
cgggtatatgggggggaaatgatattttcagaattttctggggggaaagc
aaaaaagaggggggaaactaaaaaactgaaaagtcatagggggaaaaaaa
agaggggggagatttaaaaaaatcaaaaatttggtggggggaacaaaccc
tggaggacactatggaaCTCCGGATACCTTGATAGTAAGACCTTGAAAAC
TTACATAATACAAACAGAATcttaataaaatatttcaaaatattacaaat
agCAAGCCAATTATTAGTGTGAAGATTTTGATCACAGAATTGCACAACAA
GGGACAGTATTCGAAACCCCAGCAATTCCAGCAAAGGGTGTCATGGAACG
TATGACGATAGACTCTCTTCCTTCACTGACGCTCTGATTAGGcgtgattt
tgaatgtccggagtgtcaactgatgcttgtacGGGGGTGAGATCTGTTGT
CCCaggggtcaaaattcacaatgttcgAGGGGTAAATTTCcgaaaaatgt
tatatcctcaaCCCGGGGAGGGGGTggtttctggaagagcccattactCA
AATGGctcaaatatttgaaaattcaatcaaactttttacaTTATCAGATG
AAGCTGTTTTTCCTCGTGCTTTCCTTATTGGTGGTCGAACAAAGATGTCA
AGTATCCGAACAACAATTCCAATCCGTCAAATCAACATTGGCTGCACTGT
CACGTCAAGTTATGCTCCaacaatttttcactgaaacaCGTGTCCGTACT
GAAGGTCAATCAGGTTTAAAAGTCAACCGACAACGAAGCAATGGTTTAAA
AAACTACCATATCAACACCCATACTGGTAGATCCGCAGCTGCAATTCACG
AGCATGCTAATAATGACCGTACTGTAGGAATGGGAGAACTTACAGCTGTC
CTTAATGGGATTGAATTTAAGACAAGACACAACGATTACCGATTGTACAT
GCCTCACCGAACATCTCAAAACTTCAATGCGTACGAGAAAGTACCATTCC
CTGATGTAAGAATATAAATGTTTCTTTATCttaatattgaaaatttaatt
ttagacCCGCGGAAATGTATAATTTTGCTACGTTTCTGTTTATCCtctac
ccagctgacacacaacgttgtttcaacgtttatttaacgttcacaatgtc
catataacgttagataaacgttgaaataacgttgtgtcaGCTGGGtgcga
aaagagtttcttacAGAGGAAGTATATATCTAAAGAGTTCTGCAATTCAG
ACTATAGATTTGCATGCTGTCAAGTCATGTATTTTTCTCTGTTGTTGAAT
TAAATTTTCAGAAGTTCCAGAGTGTTCTCAAAGTCAAGAAAAAAATGCTT
TCCTCTCGAAAGCATAGATCTTCAATTACACtctttataaaatgttttta
atgcCTCTTACAGTATTCTTCATCAGTTTGAATTTATCATGATGTTATTT
TCCAGGTACCACCACAAGTCGAAGCTAAAGAAACCATCGATGAACAAATC
GCCGAAATGAGAGAATACTTCAAAGCTTGGAGAAATCAAGATCCAAAACA
CCGCGACTATAAACCATACTTCAAAGCTACGTTGTGCTACTTAGAAGGTG
CCTGGACTGCATCAGCACAAAAAATTGACGAGCCTTTTGCATCTGATCGT
CATTTTGTAGATGCAAAATCATGGATGGAACTTCACGAGAAATCAAGATA
TATTGCTTACTCTGGAACCAAATCGCGACAAGAGAATCTCTCGTTCTTAC
CAACCAAAATTATGGGTTTAGTCAACGATACAATCCCTAACTTTGCCCAA
TGGAATTATCGTATCATGTGTCATCCACTGAAACGTCACTTGCCAACCAA
ACGATTGAGAGTTATAGAAGATTTATCAGCTCGCATGAGGAACAACAAAG
ACATCCTGAGACACGCTCTCTCACGATCTGCGCGTTACCAACTCAACACT
CAAGATCAAGATACTTTCAGAGAAAGACCAGAAAGCTGGAAAACTCTCCT
TGATGAACTCATGGAAGAAATCCCTGGCAAAGATAATTATCAAGGTACAA
CATTATCATtattaatttgtcataattccATAACTCATAAAAACAttcca
agctggcacacaacgttttttcaacgtttatctaatgttcacaacgtcca
aataacgttagattaacgttgaaacaacgttgtgtaccaagTGGGTTAGC
GTCTCgtacaaaataatgaaaaagttCGGGCAGTGATTTGCACACGAAAG
TTCCCTTATCTCCAAAACTAAAACTAGTACTCTTTGGCTAATGGTGGATT
TGTCgataaaaattgactttcatctTTTCtcatccttttatttcatttca
aCCGGCACAAAGCTGTTTTTTAATGTCCATCTAACGTTTATGACAGTCTC
TATAAGATTACATTATTGTCGATACGCAGTGTGCCGGGATTCAggtcaaa
ataaaattaacaacTTTAAAAGCTTATACCCTGTCTCAATTTTCTgagta
aaaatatatatatatcttttcattttcagttgatTTGGAGGATGAAGGTT
TAGATGGTAAAGCAATGCAATTGGATGGAAGTAAACTCAATGCTGGTTAT
TATCACAGATGGTTCACTATTGGTGCAGATGCTATGGGATCGGTCAAACA
ACATCGTGGTTACAATGATGACTACATGTTTGCTGCTCTCAATACACAAG
AGAAGATTGCCGGCGTTGAATTCaacaaatgtgtcaaaaataagGGAAAT
AAGGGAAAAAAGGAATGCCAAATGTTCAGACAAAAATGGTCATATGCAAT
CCCATTGGAGATCATCTACATGACACCGTTGTATAAATGGAATCCTTACA
AATTGAAGCACCATGGTGACCAAACAACTGCTAATCTGAAAATCATCAAT
GGCAACGGCAAACGAAATGGTAATTGCGCAGCAGGCGCTGCCAAGGCTTA
TACTGGCATCAACAGCCGTAATTTCTACATGACACCTGCAGCATTCTACT
CTGGTGCTTCTGTGGAGAGCAGTGCAGCTGATACAGCACGTGGTGTTACG
TGTGTATTGGATCAAGATGGCGTCGAAAGACAAGTCAGAGCCGCTGGAAC
ACACATTTTCCTACCACAAATCAAAGATGTTGGTGTTTTGAGAACCAGAT
ATCCAATCTTTCCAGTTCACGGTGAAGGATCATCTGTATGGAAAGAATTG
AACGCTGTCAGAGAAGTCACCATGAATGAAGAACAATGGCAAAAGATGTA
CTGGAAAAATNtccttttatttcatttcaaCCGGCACAAAGCTGTTTTTT
AATGTCCATCTAACGTTTATGACAGTCTCTATAAGATTACATTATTGTCG
ATACGCAGTGTGCCGGGATTCAggtcaaaataaaattaacaacTTTAAAA
GCTTATACCCTGTCTCAATTTTCTgagtaaaaatatatatatatcttttc
attttcagttgatTTGGAGGATGAAGGTTTAGATGGTAAAGCAATGCAAT
TGGATGGAAGTAAACTCAATGCTGGTTATTATCACAGATGGTTCACTATT
GGTGCAGATGCTATGGGATCGGTCAAACAACATCGTGGTTACAATGATGA
CTACATGTTTGCTGCTCTCAATACACAAGAGAAGATTGCCGGCGTTGAAT
TCaacaaatgtgtcaaaaataagGGAAATAAGGGAAAAAAGGAATGCCAA
ATGTTCAGACAAAAATGGTCATATGCAATCCCATTGGAGATCATCTACAT
GACACCGTTGTATAAATGGAATCCTTACAAATTGAAGCACCATGGTGACC
AAACAACTGCTAATCTGAAAATCATCAATGGCAACGGCAAACGAAATGGT
AATTGCGCAGCAGGCGCTGCCAAGGCTTATACTGGCATCAACAGCCGTAA
TTTCTACATGACACCTGCAGCATTCTACTCTGGTGCTTCTGTGGAGAGCA
GTGCAGCTGATACAGCACGTGGTGTTACGTGTGTATTGGATCAAGATGGC
GTCGAAAGACAAGTCAGAGCCGCTGGAACACACATTTTCCTACCACAAAT
CAAAGATGTTGGTGTTTTGAGAACCAGATATCCAATCTTTCCAGTTCACG
GTGAAGGATCATCTGTATGGAAAGAATTGAACGCTGTCAGAGAAGTCACC
ATGAATGAAGAACAATGGCAAAAGATGTACTGGAAAAATGCTGACCTCGA
CTCCGGTAATGAAGACACAACACTGTTGATGGGAGAATCAACCTGCGCAT
GCGCACCACGACACACCCATGAAATCAAATTGGACGCAGCTGAAGTACAA
ATGTTGAAAGGTGGCCATACTTTGACCAAGGAGTCTACCACAACTAATGC
TCATTTCCATTCAGTACAAATTCGATATGAGCCggacaagaaatttttct
atttcacTTCCTGTGACGCCAAATATCAATGCTGGGATAAACACGTCAAA
CAATTTGTTATCTCAGATAGttaaatacaatttttaatACTTGTGAAGTA
GAATGTGTTAGAACACACCCATATTTTATTAATACACCCTTCACTAGATT
CATTTATAACGTAAATATATAATACGCATGAGCATACatgaaaatgattt
gaaattcTTTAACTAAAAATACCCCTCTGAAATCTTTGTTAGTCATTCTG
ACATGTATAATTGTTAGGTACAGTAAACTCACGCTTATATGAGCTTCTTT
TTACGAATCTTTCTTATAATTTGAACTTTTTCTCATTTCCTTTCTGTGAG
AAACCTTCTCTTAAAAtaatactctctataattcgaatgtctTTGTAATT
GTAACAAATTAGATTCCcagttcgagttcgaattagcgaaagtCAACTGT
ATCACAAGTATAAATTGCCAACAACAACCAAAGAGCTCTCTGAAAATTAC
CGTCAGCTTCTATATCTCTATGTTTTCATCATGGTAATTATAGGAAATGT
CTAAATGCAGTGTTTCTCAACCAACCATGTTCTCCGAACGGGTTTTCTTC
TTCTAATAAAGATCACGTGTATGATCACGTGTTTTTCATATccttaaaat
tcatgaaaatgacTCTTCTCAATGTCCCACGGGCTATCAGTTATTCTCGC
CATTCTACTAGACATTCGAACAAGAAATCTTTACAGGTACCTTTATAGGT
TCAAATGGAGCGCTTCaattctattttttctttttcaacaaaatggcagc
tttttcaggattttcttcAAGTTCATGCATCGTTTTCATGTCACGTTTAG
CGATCAGATTTCGACTTCGTTTTATTCTTCTTTGTAGAAGTTCATTATAT
AAATCCCACCAAGACGCCTTATCAGTATGATTTGTCACTGATTTGATAGC
CTTTCCAGTTGTAGCACCATGAGGCACTAAAGTCTTTTTAGTTAAAGGTA
CGCGTACCGTAAAACGAACCAGCTTCGGTTTATCAGCACAATAATCACGA
ACATAAATGACTTCATTTTCGTCTAATTGCCAATTATAAATCACAAACTC
ATCTAAAAATCCTCGGAAAGTCTCGTCACCCACACTTGCTTCGTTATCCC
AATTTGTCGGTAAATCTTCTCGTTTGTCGGGACTTGCTATTTTCTCGAGT
TTCAAAATACCGTTAACGAAGATTTTGCCGACtccattttcattattata
GGTGGCCGTCAAGTGTGTCCATAAGCCCTCTGgcactaaaattttatttt
gagacCACATGTCAATTATTTCAGGAACACTCTCAATATCGGTACCAATG
GCAAACCGTACACCGCCATCGATGACTTGTAATCGGTATCCAATATTTCC
TTTATCACTTTCAGTAGTGAAAATATTATGAACACCACGTGTGCTGTTTA
ACATCACCCAGACCGTGATTGAGATTTTGGATGTGGGTAAACCACGTACT
GGGACACGCTGAATATCGAGTTGAGGGTCCGGACCTTGAGTCAAATCCAA
ACAATAACCACATTTGCCGCAATCTTCTTTCTGTTTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048280-exon-scaffold_142-1491911889:194624..194684 | TCONS_00048280-exon-scaffold_142-1491911889:194624..194684 | Clytia hemisphaerica | exon |
| TCONS_00048280-exon-scaffold_142-1510915933:194624..194684 | TCONS_00048280-exon-scaffold_142-1510915933:194624..194684 | Clytia hemisphaerica | exon |
| TCONS_00048280-exon-scaffold_142-1575043694:194624..194684 | TCONS_00048280-exon-scaffold_142-1575043694:194624..194684 | Clytia hemisphaerica | exon |
| TCONS_00048280-exon-scaffold_142-1491911889:196171..196578 | TCONS_00048280-exon-scaffold_142-1491911889:196171..196578 | Clytia hemisphaerica | exon |
| TCONS_00048280-exon-scaffold_142-1510915933:196171..196578 | TCONS_00048280-exon-scaffold_142-1510915933:196171..196578 | Clytia hemisphaerica | exon |
| TCONS_00048280-exon-scaffold_142-1575043694:196171..196578 | TCONS_00048280-exon-scaffold_142-1575043694:196171..196578 | Clytia hemisphaerica | exon |
| TCONS_00048280-exon-scaffold_142-1491911889:197029..197617 | TCONS_00048280-exon-scaffold_142-1491911889:197029..197617 | Clytia hemisphaerica | exon |
| TCONS_00048280-exon-scaffold_142-1510915933:197029..197617 | TCONS_00048280-exon-scaffold_142-1510915933:197029..197617 | Clytia hemisphaerica | exon |
| TCONS_00048280-exon-scaffold_142-1575043694:197029..197617 | TCONS_00048280-exon-scaffold_142-1575043694:197029..197617 | Clytia hemisphaerica | exon |
| TCONS_00048280-exon-scaffold_142-1491911889:199032..201562 | TCONS_00048280-exon-scaffold_142-1491911889:199032..201562 | Clytia hemisphaerica | exon |
| TCONS_00048280-exon-scaffold_142-1510915933:199032..201562 | TCONS_00048280-exon-scaffold_142-1510915933:199032..201562 | Clytia hemisphaerica | exon |
| TCONS_00048280-exon-scaffold_142-1575043694:199032..201562 | TCONS_00048280-exon-scaffold_142-1575043694:199032..201562 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:194624..201562 + |
Blast
The following BLAST results are available for this feature:
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