TCONS_00048282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048282
Unique NameTCONS_00048282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048282 ID=TCONS_00048282|Name=TCONS_00048282|organism=Clytia hemisphaerica|type=transcript|length=1236bp
ctttatgTCAAATCAGAGTTTAGAATTTCTTCAAGAAGGAAGTTCTGTTC
gataaaaagttttaattttattgtaaaagtgaagaaaattgttaaaacaT
TATCGTTAAAAATGAGTAACATTACTTTAGAAGCTTCAGTAAATGGTGCT
AGAGATGTTACTCCAGTTATTTGTGACGAATTACCGCGTAGAAAACGCGC
ATGTATGGATTTATCGGTTGAGGAAGAACCGCATCGATCCTTGCCAATGA
ATCTTCGTGGTAGAAGTATTGATGAATCTGATGCTGCTGATTCTATTGGA
GGAGCTCCAAGCTCAAAGAAAAAACGCCGCTCAACCCCAGGATCTTATGA
TCAAGGATCACCAGTCAGGCAACAAACAGGTAAAACCGGTTTTGCATCTG
ATGATGTCATTGAGAATTACAACTTAATCATCAAACAGATCTACAAAAAG
GTGACACCTGTCAAACAACGTCGTGTACGACGCTCACGAAACCAATACCG
ACAAAAGGTTGCCAAAGAACCGAAACGAAAAAGTGTTTTCAATGATATTT
CAATGTTTGAATGTCTAGATTACGATGATGGATTTGGTTATAATGAACCA
TCAAAAGACGCTGATCAACTGGCCGATATGTTTGCAAAATTAACCATCCA
TGATTTGAAACAACCACGTGCAACTTATATAAATATCAATACTCTTGCTG
GACGTACACGAAAAGTACACCAAGACTTGGCAATGCTTGTTGATGGCGAT
GAAGATGATGTTTTTGGTGGAGAATGTGAACACGTGACCAAACGCCGCTG
CATGATGTAAAGTAAAATTCGCATCAGCAGTATCCTCTCGCGCCCTCTCG
TGAACATCTTGATGGCGCACCACTAAATTCACACTCTCCTGCCCTCTCGT
GAACATCTCGATGGCGCACGCACCAAATCAAAACtatattttcaccaatt
ttcgcAGTATCTACTCACACCTCTCGTGAACGTCTCGAGGACGCTCTCTC
GTGAACCTAATTCAAACAGCCCGTATTATATCACTCATATCGTAGTATTT
TCTCGCACCCTAAACATTTCGATGACGCACGTATCAAATTCACACCTTCT
AAATACCACCCTCCCGCCCTCTCGTGAACATCTCGATATGGCGCACGTAC
CAAATTCAAACCTGTTTTGAACCACACTCCCGCCCTCTCATGAACAGCTC
AATGGCGCACGAACTAAATTCAAACCTGTTTTACAC
Run BLAST on NCBI

protein sequence of TCONS_00048282-protein

>TCONS_00048282-protein ID=TCONS_00048282-protein|Name=TCONS_00048282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
LYVKSEFRISSRRKFCSIKSFNFIVKVKKIVKTLSLKMSNITLEASVNGA
RDVTPVICDELPRRKRACMDLSVEEEPHRSLPMNLRGRSIDESDAADSIG
GAPSSKKKRRSTPGSYDQGSPVRQQTGKTGFASDDVIENYNLIIKQIYKK
VTPVKQRRVRRSRNQYRQKVAKEPKRKSVFNDISMFECLDYDDGFGYNEP
SKDADQLADMFAKLTIHDLKQPRATYININTLAGRTRKVHQDLAMLVDGD
EDDVFGGECEHVTKRRCMM
Run BLAST on NCBI

transcript from alignment at scaffold_142:216878..219701+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048282 ID=TCONS_00048282|Name=TCONS_00048282|organism=Clytia hemisphaerica|type=transcript|length=2824bp|location=Sequence derived from alignment at scaffold_142:216878..219701+ (Clytia hemisphaerica)
ctttatgTCAAATCAGAGTTTAGAATTTCTTCAAGAAGGAAGTTCTGTTC
gataaaaagttttaattttattgtaaaagtgaagaaaattgttaaaacaT
TATCGTTAAAAATGAGTAACATTACTTTAGAAGCTTCAGTAAATGGTGCT
AGAGATGTTACTCCAGTTATTTGTGACGAATTACCGCGTAGAAAACGCGC
ATGTATGGATTTATCGGTTGAGGAAGAACCGCATCGATCCTTGCCAATGA
ATCTTCGTGGTAGAAGTATTGATGAATCTGATGCTGCTGATTCTATTGGA
GGAGCTCCAAGCTCAAAGAAAAAACGCCGCTCAACCCCAGGATCTTATGA
TCAAGGATCACCAGTCAGGCAACAAACAGGTAaataccactgacctttat
ataccctggaccaagtttctcaatcccggccagcCAAAATCTTTAATCGG
AGTTTTTTGGTACCCTATTGGCGgtactactcaatagcggtgtaaatgaa
TCAAGAGCGCTAGATCATTTttcctcgaaaacttttgattatgtagcgcc
gttagatgTTAATTTGTTAATACTCAAAGGCTTCTTTaagggtaccaatt
caaaaacaaacttcgatcaaagatggtggatacaGTATGGTCTAGGGatg
tataaaggtcagtggtaaaTACCAAATGGTTTATGAATTTGTATATTTAA
AAGACACTTAGTCTTCTAATCTAATTCTAAATCTTAGTCTTATTCTTCGA
CAacaatatattttatttctgacgCTATGCAGTTAGGCAATGCAACCACA
ATCTCGCACAGCAAAAAATGGACAAAGTAACAGAAAAATGTTTAATCACC
TTTAGAGGGTTATTCTTCTTGGTTGACTTTTCACAATTCGTTACAATTTC
TGAGCTATTAGTCATCACGAACGTTCTGAAAGTAATATTAAACATATCTG
ATCTTGGAAATTAAATTTGTAAAGTGGAATATTAAGCAACCAACTTACAT
ATGGTACAATTTGACAGAATAAAGTTTTCTCTAAAAATAgaagtaataat
aataataataataatgactAATATTTTAAGTGGCTAGCCATAGAATAATG
AATCAGCTTTTAGGCAGCTGAGCCATTGTCTCCCCCAGGGGCCACTTGTA
TAACATAACAGAACAATAAATGGAACGATAACTGATTAAgctaataaata
ataaatttctAATTGAAAATACGAGttttgagtttgtttttaaacGATAA
AAGGGATTGCCATTGTTTCATCTCTAAAGGTTGATTGTTCCACAGATGTG
TGGTTGAGGTAATGAACGTTCGACTAGCAAAAGTGTTTTTGGAAAGAGGG
ACAACGACTTTATTCTCTCTTGCAAAGCGAGTGCGGCGTTCATGTCGCTC
GCTAGCAGGCTTTACCCGATCACACAAATATTTTGGCGCAATGTTCCGCA
TCCCTTTGAACATCATGAGTGTTTTATTGTATTCGACAATCTGATCAAAT
GTCTTATTGATGGGCATGGTTTTAGAGACGTTGTTCAGGAGTGAATCAAA
CTTGTTGTGATTTGCCTTTGACATAGTGCTCCAAGAATTGGAACAATATG
TAATGTGTGGCATAACAAGAGCATTTATAAGCATTTTTTTCGTGTGGTCG
TCAAGAAAGCTAGAGATGCCTTTTATCTTGTTTAGTTTGAGATAGGCTTT
CTGGCGAGCACTATTGGCCTGGGCATCCCAGTTTAGGTTTTCATCAAAGA
TGACACCGAGATAGTTTAGTACAAAGAGAACTCAAATGGTTTATAAAACA
GCTTCTATATTCTTATTAAAGGTATCGCTTTGGAGGATCCTTTATGAAGC
GGTGATATCAAGTAATAACAAAACCCTTTAAAGTTTAATGTTTAAAATGT
ATAATTCTGTGCAGCTTCACCAAAGAATTTTATAGTTTCAAATTCTAAAG
TTGTTCTCTATTTTCAGGTAAAACCGGTTTTGCATCTGATGATGTCATTG
AGAATTACAACTTAATCATCAAACAGATCTACAAAAAGGTGACACCTGTC
AAACAACGTCGTGTACGACGCTCACGAAACCAATACCGACAAAAGGTTGC
CAAAGAACCGAAACGAAAAAGTGTTTTCAATGATATTTCAATGTTTGAAT
GTCTAGATTACGATGATGGATTTGGTTATAATGAACCATCAAAAGACGCT
GATCAACTGGCCGATATGTTTGCAAAATTAACCATCCATGATTTGAAACA
ACCACGTGCAACTTATATAAATATCAATACTCTTGCTGGACGTACACGAA
AAGTACACCAAGACTTGGCAATGCTTGTTGATGGCGATGAAGATGATGTT
TTTGGTGGAGAATGTGAACACGTGACCAAACGCCGCTGCATGATGTAAAG
TAAAATTCGCATCAGCAGTATCCTCTCGCGCCCTCTCGTGAACATCTTGA
TGGCGCACCACTAAATTCACACTCTCCTGCCCTCTCGTGAACATCTCGAT
GGCGCACGCACCAAATCAAAACtatattttcaccaattttcgcAGTATCT
ACTCACACCTCTCGTGAACGTCTCGAGGACGCTCTCTCGTGAACCTAATT
CAAACAGCCCGTATTATATCACTCATATCGTAGTATTTTCTCGCACCCTA
AACATTTCGATGACGCACGTATCAAATTCACACCTTCTAAATACCACCCT
CCCGCCCTCTCGTGAACATCTCGATATGGCGCACGTACCAAATTCAAACC
TGTTTTGAACCACACTCCCGCCCTCTCATGAACAGCTCAATGGCGCACGA
ACTAAATTCAAACCTGTTTTACAC

Coding sequence (CDS) from alignment at scaffold_142:216878..219701+

>TCONS_00048282 ID=TCONS_00048282|Name=TCONS_00048282|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_142:216878..219701+ (Clytia hemisphaerica)
ctttatgTCAAATCAGAGTTTAGAATTTCTTCAAGAAGGAAGTTCTGTTC
gataaaaagttttaattttattgtaaaagtgaagaaaattgttaaaacaT
TATCGTTAAAAATGAGTAACATTACTTTAGAAGCTTCAGTAAATGGTGCT
AGAGATGTTACTCCAGTTATTTGTGACGAATTACCGCGTAGAAAACGCGC
ATGTATGGATTTATCGGTTGAGGAAGAACCGCATCGATCCTTGCCAATGA
ATCTTCGTGGTAGAAGTATTGATGAATCTGATGCTGCTGATTCTATTGGA
GGAGCTCCAAGCTCAAAGAAAAAACGCCGCTCAACCCCAGGATCTTATGA
TCAAGGATCACCAGTCAGGCAACAAACAGGTAAAACCGGTTTTGCATCTG
ATGATGTCATTGAGAATTACAACTTAATCATCAAACAGATCTACAAAAAG
GTGACACCTGTCAAACAACGTCGTGTACGACGCTCACGAAACCAATACCG
ACAAAAGGTTGCCAAAGAACCGAAACGAAAAAGTGTTTTCAATGATATTT
CAATGTTTGAATGTCTAGATTACGATGATGGATTTGGTTATAATGAACCA
TCAAAAGACGCTGATCAACTGGCCGATATGTTTGCAAAATTAACCATCCA
TGATTTGAAACAACCACGTGCAACTTATATAAATATCAATACTCTTGCTG
GACGTACACGAAAAGTACACCAAGACTTGGCAATGCTTGTTGATGGCGAT
GAAGATGATGTTTTTGGTGGAGAATGTGAACACGTGACCAAACGCCGCTG
CATGATGTAActttatgTCAAATCAGAGTTTAGAATTTCTTCAAGAAGGA
AGTTCTGTTCgataaaaagttttaattttattgtaaaagtgaagaaaatt
gttaaaacaTTATCGTTAAAAATGAGTAACATTACTTTAGAAGCTTCAGT
AAATGGTGCTAGAGATGTTACTCCAGTTATTTGTGACGAATTACCGCGTA
GAAAACGCGCATGTATGGATTTATCGGTTGAGGAAGAACCGCATCGATCC
TTGCCAATGAATCTTCGTGGTAGAAGTATTGATGAATCTGATGCTGCTGA
TTCTATTGGAGGAGCTCCAAGCTCAAAGAAAAAACGCCGCTCAACCCCAG
GATCTTATGATCAAGGATCACCAGTCAGGCAACAAACAGGTAAAACCGGT
TTTGCATCTGATGATGTCATTGAGAATTACAACTTAATCATCAAACAGAT
CTACAAAAAGGTGACACCTGTCAAACAACGTCGTGTACGACGCTCACGAA
ACCAATACCGACAAAAGGTTGCCAAAGAACCGAAACGAAAAAGTGTTTTC
AATGATATTTCAATGTTTGAATGTCTAGATTACGATGATGGATTTGGTTA
TAATGAACCATCAAAAGACGCTGATCAACTGGCCGATATGTTTGCAAAAT
TAACCATCCATGATTTGAAACAACCACGTGCAACTTATATAAATATCAAT
ACTCTTGCTGGACGTACACGAAAAGTACACCAAGACTTGGCAATGCTTGT
TGATGGCGATGAAGATGATGTTTTTGGTGGAGAATGTGAACACGTGACCA
AACGCCGCTGCATGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030729XLOC_030729Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048282-proteinTCONS_00048282-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048282-exon-scaffold_142-1491911889:216878..217256TCONS_00048282-exon-scaffold_142-1491911889:216878..217256Clytia hemisphaericaexon
TCONS_00048282-exon-scaffold_142-1510915933:216878..217256TCONS_00048282-exon-scaffold_142-1510915933:216878..217256Clytia hemisphaericaexon
TCONS_00048282-exon-scaffold_142-1575043694:216878..217256TCONS_00048282-exon-scaffold_142-1575043694:216878..217256Clytia hemisphaericaexon
TCONS_00048282-exon-scaffold_142-1491911889:218845..219701TCONS_00048282-exon-scaffold_142-1491911889:218845..219701Clytia hemisphaericaexon
TCONS_00048282-exon-scaffold_142-1510915933:218845..219701TCONS_00048282-exon-scaffold_142-1510915933:218845..219701Clytia hemisphaericaexon
TCONS_00048282-exon-scaffold_142-1575043694:218845..219701TCONS_00048282-exon-scaffold_142-1575043694:218845..219701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:216878..219701 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.172725	0.168434	0.234682	0.153066	0.0931718	0	0.177652	0.083158	0	0	0.0349987	0.0230068	0.0229748	0	0.0392316	0.0842031	0.129664	0.186062	0.0734443	0.153708	0.0334001	0.244371	0.0396086	0.18005	0.148358	0.132406	0.284209	0.303315	0.115027	0.195324
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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