TCONS_00048460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048460
Unique NameTCONS_00048460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048460 ID=TCONS_00048460|Name=TCONS_00048460|organism=Clytia hemisphaerica|type=transcript|length=673bp
TCTCGGTGTCATCTTTGATGAAAACCTAAACTGGGATGCCCAGGCCAATA
GTGCTCGCCAGAAAGCCTATCTCAAACTAAACAAGATAAAAGGCATCTCT
AGCTTTCTTGACGACCACACGAAAAAAATGCTTATAAATGCTCTTGTTAT
GCCACACATTACATATTGTTCCAATTCTTGGAGCACTATGTCAAAGGCAA
ATCACAACAAGTTTGATTCACTCCTGAACAACGTCTCTAAAACCATGCCC
ATCAATAAGACATTTGATCAGATTGTCGAATACAATAAAACACTCATGAT
GTTCAAAGGGATGCGGAACATTGCGCCAAAATATTTGTGTGATCGGGTAA
AGCCTGCTAGCGAGCGACATGAACGCCGCACTCGCTTTGCAAGAGAGAAT
AAAGTCGTTGTCCCTCTTTCCAAAAACACTTTTGCTAGTCGAACGTTCAT
TACCTCAACCACACATCTGTGGAACAATCAACCTTTAGAGATGAAACAAT
GGCAATCCCTTTTATCgtttaaaaacaaactcaaaaCTCGTATTTTCAAT
TagaaatttattatttattagcTTAATCAGTTATCGTTCCATTTATTGTT
CTGTTATGTTATACAAGTGGCCCCTGGGGGAGACAATGGCTCAGCTGCCT
AAAAGCTGATTCATTATTCTATG
Run BLAST on NCBI

protein sequence of TCONS_00048460-protein

>TCONS_00048460-protein ID=TCONS_00048460-protein|Name=TCONS_00048460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
LGVIFDENLNWDAQANSARQKAYLKLNKIKGISSFLDDHTKKMLINALVM
PHITYCSNSWSTMSKANHNKFDSLLNNVSKTMPINKTFDQIVEYNKTLMM
FKGMRNIAPKYLCDRVKPASERHERRTRFARENKVVVPLSKNTFASRTFI
TSTTHLWNNQPLEMKQWQSLLSFKNKLKTRIFN
Run BLAST on NCBI

transcript from alignment at scaffold_142:217966..218638

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048460 ID=TCONS_00048460|Name=TCONS_00048460|organism=Clytia hemisphaerica|type=transcript|length=673bp|location=Sequence derived from alignment at scaffold_142:217966..218638 (Clytia hemisphaerica)
CATAGAATAATGAATCAGCTTTTAGGCAGCTGAGCCATTGTCTCCCCCAG
GGGCCACTTGTATAACATAACAGAACAATAAATGGAACGATAACTGATTA
AgctaataaataataaatttctAATTGAAAATACGAGttttgagtttgtt
tttaaacGATAAAAGGGATTGCCATTGTTTCATCTCTAAAGGTTGATTGT
TCCACAGATGTGTGGTTGAGGTAATGAACGTTCGACTAGCAAAAGTGTTT
TTGGAAAGAGGGACAACGACTTTATTCTCTCTTGCAAAGCGAGTGCGGCG
TTCATGTCGCTCGCTAGCAGGCTTTACCCGATCACACAAATATTTTGGCG
CAATGTTCCGCATCCCTTTGAACATCATGAGTGTTTTATTGTATTCGACA
ATCTGATCAAATGTCTTATTGATGGGCATGGTTTTAGAGACGTTGTTCAG
GAGTGAATCAAACTTGTTGTGATTTGCCTTTGACATAGTGCTCCAAGAAT
TGGAACAATATGTAATGTGTGGCATAACAAGAGCATTTATAAGCATTTTT
TTCGTGTGGTCGTCAAGAAAGCTAGAGATGCCTTTTATCTTGTTTAGTTT
GAGATAGGCTTTCTGGCGAGCACTATTGGCCTGGGCATCCCAGTTTAGGT
TTTCATCAAAGATGACACCGAGA

Coding sequence (CDS) from alignment at scaffold_142:217966..218638

>TCONS_00048460 ID=TCONS_00048460|Name=TCONS_00048460|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_142:217966..218638 (Clytia hemisphaerica)
ctAATTGAAAATACGAGttttgagtttgtttttaaacGATAAAAGGGATT
GCCATTGTTTCATCTCTAAAGGTTGATTGTTCCACAGATGTGTGGTTGAG
GTAATGAACGTTCGACTAGCAAAAGTGTTTTTGGAAAGAGGGACAACGAC
TTTATTCTCTCTTGCAAAGCGAGTGCGGCGTTCATGTCGCTCGCTAGCAG
GCTTTACCCGATCACACAAATATTTTGGCGCAATGTTCCGCATCCCTTTG
AACATCATGAGTGTTTTATTGTATTCGACAATCTGATCAAATGTCTTATT
GATGGGCATGGTTTTAGAGACGTTGTTCAGGAGTGAATCAAACTTGTTGT
GATTTGCCTTTGACATAGTGCTCCAAGAATTGGAACAATATGTAATGTGT
GGCATAACAAGAGCATTTATAAGCATTTTTTTCGTGTGGTCGTCAAGAAA
GCTAGAGATGCCTTTTATCTTGTTTAGTTTGAGATAGGCTTTCTGGCGAG
CACTATTGGCCTGGGCATCCCAGTTTAGGTTTTCATCAAAGATGACACCG
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030814XLOC_030814Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048460-proteinTCONS_00048460-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048460-exon-scaffold_142-1491911889:217966..218638TCONS_00048460-exon-scaffold_142-1491911889:217966..218638Clytia hemisphaericaexon
TCONS_00048460-exon-scaffold_142-1510915933:217966..218638TCONS_00048460-exon-scaffold_142-1510915933:217966..218638Clytia hemisphaericaexon
TCONS_00048460-exon-scaffold_142-1575043694:217966..218638TCONS_00048460-exon-scaffold_142-1575043694:217966..218638Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:217966..218638 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.784879	0.613952	0.757199	0.98424	0.103111	0.196046	0.589813	0.12176	0.773183	0.427604	0.387324	0.428127	3.10524	2.49897	4.37656	5.25676	1.47487	1.87271	3.82756	2.44017	1.70031	1.9107	0.413739	1.19555	1.51977	1.77091	1.49213	0.89325	1.4302	1.38908
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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