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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048285 ID=TCONS_00048285|Name=TCONS_00048285|organism=Clytia hemisphaerica|type=transcript|length=1423bp
AATGATGGTTCCTGGAAGTTCACTGTTCCAGGTTACAATGaatatGAGAA
TTTCGATGTGGCTTTGTATGCGTTGAACCCTAGAAGGGGACTGGAGTAGT
GAATTTAACACTGTCAATGGTTTAATAATTTGTGACTTGATTATTCAAAG
AGAGAGCGTGAAAAATACTATTGGAATAAAAAGATGGTTTTTGGTAATGG
TACAGCAATAAGAGACTTAAAGTGTCCAGCGACGTTGGTATATGTGGATT
CTCAAGCCTTTACAATCAACTCCATCGTTGTTGCCATCTTTAATCTGGTC
GTTGCCGTGCCAACCATAATGCTAAACATCTTGGTAATTGTTGCTATGTC
GAGAAAAGCTTCACTGCGTAAATTAAGCAATAAGATTTTAACGAATCTAG
CAATTTCAGATCTATTAAGTGGACTTATGGTGCAGCCCAGTATTAGCGCA
ATCCTTATTATTGCTAATTCTCAGACACCTTTAGATGTTCCTTGTCAGTT
AGTGATTTTCACCAGTGTTGCTGGATACACGTTGGCTTGTGTTTCGCTAC
TGACGGTATCTTTTGTCTCATTTGAACGCTACGTGGCTATATTTTATCCG
TTTTTCTACAACCGACGTATTTCATCGAGACTCTTATTAATTGTGTGTGC
TTCCATATGGATTGTATCATTTGTGGCAATATTTAGTATGTATTTTACAA
ACCAGCACGCCTTATTCTTTTGGACCAATCTCGTTGTAATAACTTTCACT
TATCTATGGAACATATATGTTTATATACAAATCATGCGACAGGTCAATAA
GATACATCGTGATATGCAGCAAAGGCTCAAAGTTCTTGGTAccgaaaaaa
atgtcaaaaataattcGAAAAGTATGCGGTTGGCTGCTGTTGTCATTTTA
AACCTTTTGTCATGTTACTTACCTCAAATTATATTATCAATATGGCGCAG
CATACCCTCGTACCCCCTTTTCGTTGACGGTTATTTGGAATACTGGTCGA
TGACTATTGGACCTTTTGCATCGTGTCTTAACCCCCTTGTTTATTGTTAC
TACGATCCTGAGATCAAACGAGAAGTTTGCAGTATCGTGACAAGGTCAAG
GCGGAAACAAGATGATTTTTCAAGGAGTTATTATGGTGGTAGCTTTGAAA
GTTCACCGTTACCTTCAAGTAGAAATTTTACTATCAAAGAACGAATGCAA
GTTAAGAATTCGTCACAAAATGGTGGATTTTGTGATGATCAGGACGATCC
AGTGaggaaatcttcgaaaaatgaTATCGAAGAGGACAACCTATGATGAA
AACAGTCTGTTACCTAATTAATCAACTCAAGGTAGTTTTGTATGTCATTA
ATATTGTATTTTCgaataaataatgaaaattcaggaatttaaaaagcttt
aaaaatggttaatttacaataaa Run BLAST on NCBI protein sequence of TCONS_00048285-protein >TCONS_00048285-protein ID=TCONS_00048285-protein|Name=TCONS_00048285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MVFGNGTAIRDLKCPATLVYVDSQAFTINSIVVAIFNLVVAVPTIMLNIL
VIVAMSRKASLRKLSNKILTNLAISDLLSGLMVQPSISAILIIANSQTPL
DVPCQLVIFTSVAGYTLACVSLLTVSFVSFERYVAIFYPFFYNRRISSRL
LLIVCASIWIVSFVAIFSMYFTNQHALFFWTNLVVITFTYLWNIYVYIQI
MRQVNKIHRDMQQRLKVLGTEKNVKNNSKSMRLAAVVILNLLSCYLPQII
LSIWRSIPSYPLFVDGYLEYWSMTIGPFASCLNPLVYCYYDPEIKREVCS
IVTRSRRKQDDFSRSYYGGSFESSPLPSSRNFTIKERMQVKNSSQNGGFC
DDQDDPVRKSSKNDIEEDNL Run BLAST on NCBI transcript from alignment at scaffold_142:269833..276615+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048285 ID=TCONS_00048285|Name=TCONS_00048285|organism=Clytia hemisphaerica|type=transcript|length=6783bp|location=Sequence derived from alignment at scaffold_142:269833..276615+ (Clytia hemisphaerica)
AATGATGGTTCCTGGAAGTTCACTGTTCCAGGTTACAATGGTGAGCTATA
AAAATTGATTACAGACGGTTTTGCTTTCTAATATATTCCTtcatcttttt
ttattgaaaaaagctTTCAAGTTTcttaacctttctttttaagagTAAAA
AGAATTCCATAGTTGGCCTGCATAAGCCACCTCGTTTAAACTACATAACA
ATATATTTCTCAAATATCAGGCTGCTTGCGCTTTATATTAATCTTCAATT
TGCTTGTAATATGTTCTTAacgaattatttttttcaaatattaaattCTC
AGGTTTATTTGCTGAAGTCATCAATGAGTAATTTGGTTTGAGTTTTCTCG
AATTTCGATCGCTAAATATTGCCTAAAGAACTGTTTTTTATGTAAATGAT
AAGCTACTTCAGTGTCTCTCCAGACATCAATAGTGTTCGGATTTTAAGAT
TTCTGGGaataatgaagaagaaaaaaaacgtttGTTAAATCACATTCTTG
caaaggaaattttgaaatactaCTGTAATTGATAAGCACATGTTGGATTT
TCAGCGCCGCCCGGCTgtttgcgtgaatgtgtgaaaaattttaaaaagtt
gcgtgaatgcgtgaatttggaaaaaatagatTGCGTGATTGcttgaattg
aaggtccgctgcGGGGCCACTTTTAGTAGTTGATAattatttaatgtttt
ttaCATATTGTTTTGAATTCAACATTAATGTTCTATTCAAGAACTGGATA
TGATCGTAATGGTTCATGGGGAATTGCcgtaaaattgtattttgtccAAA
AGGGGTAAAATAGAATCACCATTATTAAGagcttttgatttctttgattt
cttgATATAAGTTTTCTTCGTTTTATCATCTTGTTGTGTGGCCCAAGGAA
ACGCTGTAGGAAAGGTTTACAGCTGAAgtgattttaaataaaataataaa
gctTGTCAAtattgaaagtttgtaaatatttaaaaatacttAATGCTTCC
GAAAATAGACTTTATTATTTGTGCAGTCGCGTTATATTTAAATGTGAAAT
AAATTTGTTGTTTCGTTTTGCTGTATTTAGGTTCTAAAGTCTGAAAGAAA
CAAAAACGATGGTCGCAGGATAACGCTAAGGTTCCTGTTTAGCTCAGAAA
AGAAATGAAACCATTTTATTAGTTAAAGGTGACGTAACAATCAAATTAAc
aaatagaatggcttcattacgtttcggagcgaaacgagAACCATGGCGTG
TAAACGTAggctagcaagctagacgactaattcagacattgtagaaataa
agcaaaaagtaatggaaggAACAATTTTGGTCTATACAAgcttttagttt
atacaaactaatcccccgtaacaataattgtattattatataacgcctat
actactgtattacacgcattatagacgactccagtctaaagtaagtaagt
aagtctgcgaccgcagtcggaggcgacccgaaggctcctctttcgatagc
tatctacccgaaggtaggggagggcgccactctttctccctggatttctc
cacttacccttgatccttctcttaattgccgagcatcaagcagagaggca
tcaagtaccatttttggaatctttggtatgaaccggctgggggttgaacc
cacaaccttgcgaaccgtagccggatgctctaccactgcactacggtcac
TCACTCCAGTCTATGTGAACGTAGTCAAAGTTTCAAAGTGAGAAATAGTA
CACACAAATAAAAGTATTTCTCACTTGATTGATAAATTTCAATAAGAGAG
TTTCGGTACCGAGCAAGTGCTAATTTcatctttctttatttttcagaata
tGAGAATTTCGATGTGGCTTTGTATGCGTTGAACCCTAGAAGGGGACTGG
AGTAGTGAATTTAACACTGTCAATGGTTTAGTAAGTTTCCTTATCTTCTG
CTACTCATAAACTATACTTTTGATTGCCTTACTTTTGGTCGTTCTTTGAA
CGTCgccctttgtttttttttcgagatCAAGAATTCGTGAAAAtctatac
acgcttttttctttataagaatggtgtaactccatttcatcatgggtatt
cttaacttttttgggaaaatcatcctaaaatattcttacagcatattctt
aggttagggccctaattcagactatatttaacatttagtacatacgtctc
aagcataagattgcatttttgtgaaaggggtGAGCCTTACTttggggtaa
ttgacaatttataattgaaaatgctctaaaaatggcattcttagcttgag
taacAAAATTCTCtcgattatcgtagcgtagtacactctgtgtgcatttt
ctgtttgataaaaaatttcccgtacggagacctctgcgatgaagtataat
tttaaaattaaatggcAGCCCGCAAAGTTACgacaattgtaaacaaaggg
GCCCATGATTGAGGGTCACTTTCTAAGCAtgttttggctgttttttaatg
tttttaagccaaactaaaagctgaaaagtaacgaagacatattcaaaatt
gtgtctaacagaaaattattttcccatTACCCTACATTTTCCATATAGTC
cgccaaagaaaaatataaacattttttacaaaagttatGCAACAAAACAA
ACTATAACCACTCTACATAGATCAAATACAGTAAAAAAAATACTGAATTG
GATAGAGATATTCTGAGTATATTCTTTTgcaaagaactgaagttaaaacc
actttaaaaacaagattCCAATCAAACAACTTCTTTCTCACGTTCGTGAA
CTCAAAgatccaaaatgtaaacaaaaaaacttcgatttgtgcaaaaagag
ttattttgcaatagaatgtcttcatttagaggtctcttttattccaatta
tttaaaaataagaaGCCAGTTTTGTCACGAAGACACTTTTTTTCGACAAT
CTTCTACAGTATACTTTCTGACAATTCTGACGGCCATTTTCTCTTATCGC
CTCCAATTTCTCGCCAAACTCCAacagcactccatcgcagcggttggTTT
GAGAAATATCAaaccagaaaagacaatgacaacagacctctacggcaatg
aattttgaaattagccgtagatatcgggtctgtgtacagacaacaaaatt
ctatgatggtgatattcttagcatattcttaattttttggccattttcat
catggacattcttataaagtgtattcttataaaaaaaagcgtgtattaaa
ggttttatttttacataagtgttcccgtttcatatcagacacatatttca
tatcaggacagtgtctgtctattgttatgttatgtctctttctgaccaaa
cttgctccacatccgtttttaaataaaagtgatatcgtttgcttactaaT
CAAtattaattcacaagctttttggacctaccccggtggaggtcctataa
attaacctgtgtttgttcgtctgttcgtctgttcgtccgtccgttcgttc
gtctgttaccaacttttctcaggattgaatcataggaatcttttgatttt
tggtacaaaggtgcaaaatggtggtggccaaaatgtgacggagcccgatt
ttcgaaaaaaaaaattttggggcaaatttggaccaaaaaacggctaaaaa
acgggttttttggactttgtgaaaaattggatcattaattttttttgatt
ttatcattaattttttttgattttttgcatgaaagtagggtaccatcata
ggtaaaagatggctcagacagaattttgcaaaaaaattttgttggctcaa
aaaacgcatgtttatctatataagaattactattgataagcatacataat
tgttcttagtcaaattactcaatttttttatgagatagatgttttttttg
ctcatgaaggcttacttttgaagaatatgtgtgtttaagacaggaaattt
tagttgcttggcgtgttcCTATAGAAAAACTGGGCAAATTCGATATAATT
TAttagcacattatcaattacttatgtattagcttttctcgagattggat
ttttcattctttatgatattttgcacaaagatgcataactataaaccttc
gaatgtgatggagtccgattttcaaataaaaatgttattgggcaaatttg
ggccaaaaaacggctaaaaaaacgggtttttggacttcgtgaaatgattg
gatcattgtttttttctgattttttgcatgaaagtaggtaaaagatggct
caagcagatttttgtaaaaaaagaatttatctttatctataagaaccact
gtTAATAAGCAcatatcaatgttcttagccaaattactgaattttttgat
gagatagatggtTTTTTTGctaacgaagtcttgaatatgaaagattattt
caagagcatgaaattttggttttcaaacgtttttttataagaaacaaacg
actaatttaaaTAGATCGtaactatttgtgttctgaatgattgtttaatg
gtcacgtcacgtagatatcaattatatatgtgttaaatgcataaccaggt
aggtccataaaagtatcacttgttcaaattggattgacacgggtgtggag
caagattggcccgaaagaggaaaagaaaatcaacttttgcttacatcagc
ataatataacaataggttgGCACTGTCTTGATATGAAATCCcgtatgaaa
tatgtgtctgatatgaaacgggaacatttATGTAAAATCGTTCCCACCAA
AAAGAGCAAACGAGTATAATGAAAATTCGAACCTCCTGTAGAAAATTCTC
AGGGGATTTTGATCTAAATGTAAAGTGAGCAGAAGGAACAAAAAGAAGCA
CGTGCGAACGGTTAACTTGCTAATTTTtgataagaaataaataaatatga
tTAAGAAATTTATTCTTTGAAATCTAAGAGTTGAAGCTATCTGGACCGAC
ACGCCTGTAAATTGGTTTAGCAACATTTAACACAAGTGTTACCTTACATC
GCGTAATTTTTCTATCTAATTATCATattatgatgtaatctttttgCAAA
GCGTAGTATCACCTGAATACGACTTTCTGTAAAGAGATTCAAAGTCCNTA
ATCTTTTTGCAAAGCGTAGTATCACCTGAATACGATATTCTGTAAAGAGA
TTCAAAGTCTATCCATCATACATATGCAAGGTTGAAATTTAATTCAAACA
TCTCTTTTAGCAtattaattttttcttcgttattttttaaacttgaatCT
TGCGATTAAAAACAAGCTTAAGCAAATTTTGCAAGCCCTTTGCACTCCAG
GCAAGCTCGTCGCTCGCTAATGCTTCTCACTTGGCTATACTTCAGCGTAA
CCAGAGTTTAATTTCTTTGAATCTCTGGGCAAGATTTCTCTAGTTTTGCT
TTTGCTTCGTTTTTATTCGAATAAATCTGAATCCCTTCTTAATCGTTATT
CTATAAACCTGTTTATATCTTCTGTGTTTTCTAGATAATTTGTGACTTGA
TTATTCAAAGAGAGAGCGTGAAAAATACTATTGGAATAAAAAGATGGTTT
TTGGTAATGGTACAGCAATAAGAGACTTAAAGTGTCCAGCGACGTTGGTA
TATGTGGATTCTCAAGCCTTTACAATCAACTCCATCGTTGTTGCCATCTT
TAATCTGGTCGTTGCCGTGCCAACCATAATGCTAAACATCTTGGTAATTG
TTGCTATGTCGAGAAAAGCTTCACTGCGTAAATTAAGCAATAAGATTTTA
ACGAATCTAGCAATTTCAGATCTATTAAGTGGACTTATGGTGCAGCCCAG
TATTAGCGCAATCCTTATTATTGCTAATTCTCAGACACCTTTAGATGTTC
CTTGTCAGTTAGTGATTTTCACCAGTGTTGCTGGATACACGTTGGCTTGT
GTTTCGCTACTGACGGTATCTTTTGTCTCATTTGAACGCTACGTGGCTAT
ATTTTATCCGTTTTTCTACAACCGACGTATTTCATCGAGACTCTTATTAA
TTGTGTGTGCTTCCATATGGATTGTATCATTTGTGGCAATATTTAGTATG
TATTTTACAAACCAGCACGCCTTATTCTTTTGGACCAATCTCGTTGTAAT
AACTTTCACTTATCTATGGAACATATATGTTTATATACAAATCATGCGAC
AGGTCAATAAGATACATCGTGATATGCAGCAAAGGCTCAAAGTTCTTGGT
AccgaaaaaaatgtcaaaaataattcGAAAAGTATGCGGTTGGCTGCTGT
TGTCATTTTAAACCTTTTGTCATGTTACTTACCTCAAATTATATTATCAA
TATGGCGCAGCATACCCTCGTACCCCCTTTTCGTTGACGGTTATTTGGAA
TACTGGTCGATGACTATTGGACCTTTTGCATCGTGTCTTAACCCCCTTGT
TTATTGTTACTACGATCCTGAGATCAAACGAGAAGTTTGCAGTATCGTGA
CAAGGTCAAGGCGGAAACAAGATGATTTTTCAAGGAGTTATTATGGTGGT
AGCTTTGAAAGTTCACCGTTACCTTCAAGTAGAAATTTTACTATCAAAGA
ACGAATGCAAGTTAAGAATTCGTCACAAAATGGTGGATTTTGTGATGATC
AGGACGATCCAGTGaggaaatcttcgaaaaatgaTATCGAAGAGGACAAC
CTATGATGAAAACAGTCTGTTACCTAATTAATCAACTCAAGGTAGTTTTG
TATGTCATTAATATTGTATTTTCgaataaataatgaaaattcaggaattt
aaaaagctttaaaaatggttaatttacaataaa Coding sequence (CDS) from alignment at scaffold_142:269833..276615+ >TCONS_00048285 ID=TCONS_00048285|Name=TCONS_00048285|organism=Clytia hemisphaerica|type=CDS|length=1113bp|location=Sequence derived from alignment at scaffold_142:269833..276615+ (Clytia hemisphaerica)
ATGGTTTTTGGTAATGGTACAGCAATAAGAGACTTAAAGTGTCCAGCGAC
GTTGGTATATGTGGATTCTCAAGCCTTTACAATCAACTCCATCGTTGTTG
CCATCTTTAATCTGGTCGTTGCCGTGCCAACCATAATGCTAAACATCTTG
GTAATTGTTGCTATGTCGAGAAAAGCTTCACTGCGTAAATTAAGCAATAA
GATTTTAACGAATCTAGCAATTTCAGATCTATTAAGTGGACTTATGGTGC
AGCCCAGTATTAGCGCAATCCTTATTATTGCTAATTCTCAGACACCTTTA
GATGTTCCTTGTCAGTTAGTGATTTTCACCAGTGTTGCTGGATACACGTT
GGCTTGTGTTTCGCTACTGACGGTATCTTTTGTCTCATTTGAACGCTACG
TGGCTATATTTTATCCGTTTTTCTACAACCGACGTATTTCATCGAGACTC
TTATTAATTGTGTGTGCTTCCATATGGATTGTATCATTTGTGGCAATATT
TAGTATGTATTTTACAAACCAGCACGCCTTATTCTTTTGGACCAATCTCG
TTGTAATAACTTTCACTTATCTATGGAACATATATGTTTATATACAAATC
ATGCGACAGGTCAATAAGATACATCGTGATATGCAGCAAAGGCTCAAAGT
TCTTGGTAccgaaaaaaatgtcaaaaataattcGAAAAGTATGCGGTTGG
CTGCTGTTGTCATTTTAAACCTTTTGTCATGTTACTTACCTCAAATTATA
TTATCAATATGGCGCAGCATACCCTCGTACCCCCTTTTCGTTGACGGTTA
TTTGGAATACTGGTCGATGACTATTGGACCTTTTGCATCGTGTCTTAACC
CCCTTGTTTATTGTTACTACGATCCTGAGATCAAACGAGAAGTTTGCAGT
ATCGTGACAAGGTCAAGGCGGAAACAAGATGATTTTTCAAGGAGTTATTA
TGGTGGTAGCTTTGAAAGTTCACCGTTACCTTCAAGTAGAAATTTTACTA
TCAAAGAACGAATGCAAGTTAAGAATTCGTCACAAAATGGTGGATTTTGT
GATGATCAGGACGATCCAGTGaggaaatcttcgaaaaatgaTATCGAAGA
GGACAACCTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048285-exon-scaffold_142-1491911889:269833..269872 | TCONS_00048285-exon-scaffold_142-1491911889:269833..269872 | Clytia hemisphaerica | exon |
| TCONS_00048285-exon-scaffold_142-1510915933:269833..269872 | TCONS_00048285-exon-scaffold_142-1510915933:269833..269872 | Clytia hemisphaerica | exon |
| TCONS_00048285-exon-scaffold_142-1575043694:269833..269872 | TCONS_00048285-exon-scaffold_142-1575043694:269833..269872 | Clytia hemisphaerica | exon |
| TCONS_00048285-exon-scaffold_142-1491911889:271679..271762 | TCONS_00048285-exon-scaffold_142-1491911889:271679..271762 | Clytia hemisphaerica | exon |
| TCONS_00048285-exon-scaffold_142-1510915933:271679..271762 | TCONS_00048285-exon-scaffold_142-1510915933:271679..271762 | Clytia hemisphaerica | exon |
| TCONS_00048285-exon-scaffold_142-1575043694:271679..271762 | TCONS_00048285-exon-scaffold_142-1575043694:271679..271762 | Clytia hemisphaerica | exon |
| TCONS_00048285-exon-scaffold_142-1491911889:275317..276615 | TCONS_00048285-exon-scaffold_142-1491911889:275317..276615 | Clytia hemisphaerica | exon |
| TCONS_00048285-exon-scaffold_142-1510915933:275317..276615 | TCONS_00048285-exon-scaffold_142-1510915933:275317..276615 | Clytia hemisphaerica | exon |
| TCONS_00048285-exon-scaffold_142-1575043694:275317..276615 | TCONS_00048285-exon-scaffold_142-1575043694:275317..276615 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:269833..276615 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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