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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048286 ID=TCONS_00048286|Name=TCONS_00048286|organism=Clytia hemisphaerica|type=transcript|length=2158bp
atATAGGAGTGCAAGCATGGTGTCGTTGAAATGTTGCCAGTTGTTGCTTT
TAGTTGCCATGGTATCTGCTTATAACTACGAACGAGATGGAAGAGAGTTT
GCAGACAATCTAGATGAACCTGCTCGAGAAAGTTTCCACCGACAAAATTA
CGAGGACTCTCCAAACAACTCTGAGAAAAGATACCAAGCTGATGCTAACG
AATCACCTTTTGAAGACAGTGAACCAAGACGTGTTCGAAGTGAAGAAACC
AATAGCCGAAATGACAACCCATTCATTGATGGAAAAGTATGGTGGGGTGG
AAAAGACGAACCGGAGACCCAatacaaaaatgaaatgaaCAGAGATCTGG
AAAACATTGAAGAAACCAATAGCCGAAATGACAACCCATTCATTGATGGA
AAAGTATGGTGGGGTGGAAAAGACGAACCGGAGACCCAatacaaaaatga
aatgaaCAGAGATCTGGAAAACATTGAAGAAACCAATAGCCGAAATGACA
ACCCATTCATTGATGGAAAAGTATGGTGGGGTGGAAGAGACGAACCGGAG
ACCCAatacaaaaatgaaatgaaCAGAGATCTGGAAAACATTGAAGAAAC
CAATAGCCGAAATGACAACCGTGAATCTGATCATCGATTTGAGAACACCA
TAGCCAACAATGATCAAGAAAATTCGCTTAAAGATGATCAGTATCAATCA
CCAGATTTCCGAAGAGAACCTATGGATAATGAATTGCAATCTGATCCTGC
TGTCAGAACCCGAATTGCCAACTGGTGGAACACATTTGATCATGGTGGTT
TATCAAAATGTGCTCCTAACACCTACTTGACTGGTCTATGGAGAAGTGCC
AGACATCGACCAGATCGACTTGGATTACTTGAACAAGGAGATTGTAAATC
AACACCTTTCCCATCTAATGGTTACTCACGTTGTTACAAATTGAATATCT
GGCACAGTTTCGATCGAAAAGGTTGGGCACAATGTCGTAGGGGTTACTTC
ATCCAATCTATTACTTCAACCAGAGGAAAGGGCCTTCACAATATTGAAGA
ACTCCACTGCTGCAAACCAAAAGCATCTATCCAAGGTAGATGCCATAAAG
AGAATGTTTGGAGGTCTTTTGACCATAAGGGCTGGTCCAGATGCAGAGCA
GGTACCTACATGCAAGGTATATTTCGAAACACCTGTGATCAATTATTCTG
CCTTGAGGAATTTAGGTGTTGCTCAATGAAACAAAGTATTCCAAATCCTG
GCAGAATCGCAGTAAGTAGAGCAAACTGGTGGCATTCTTTTGATCGTCAA
GGTTGGTCTACATGTCCTGCAGGTCAGTATATCACTGGTTTTTATCGAAG
TGCTAGGAGAATACCAGACGGTATTTGGCGCCTTGAGGAGGCTAAATGTA
AAAGTGCACCATTAGGATGGGTCCCGAGAAGACAACAACAATGCTACAAA
CTCAACATCTGGAGTTCCTTTGACCGTAAAGGATGGGGAAAGTGCAAACA
TGGCTATTACATGCAAGGTATTTACCGCACCAATGGAAGAAACTTACATA
ACATTGAAGAATTCCGCTGCTGCAAACCCAAAAATCACCATGTCGTCCAA
AGGAGTTGCCGAAAACAAAACGTTTGGCATTCTTTCGACAGGAAAGGATG
GTCCCAGTGCCCTGGTAATACCTACATGACTGGAATATGGAGAAACAATT
GCAACTGGCTTTATTGTATTGAGGAATTCGAATGCTGTTCAATGAAATAC
GTTTAGAGATAACGTCAAAGAAACTAGAATGAGGGATAGTATATGAATAA
CGAGACCTCACTTTTAATAGACCAAGGAGagttttctttaattttgtatt
tttttttataggTGGGTGAAATTAAATCTTCTAAGACCTGTACTACCATT
TTCGTTAAAATGCAAGCTAAGTGGGTCAAGTATGACTTTTCGGATAGCtg
tttcttgaaaaaatgaaacactAAGCTTTAGCTTCGATATTTGTTTAAAT
TAACTTTACAATAACAACTTTACCCAACTTGTAATTTCTTGTTAGggata
aacttttatttttttttctattttcttttacaACTTTAATTTATGTAGAC
TTTTTTATagctttcaattttcttttttgatttcgGGAAAAAATTCATGT
TCAACATA Run BLAST on NCBI protein sequence of TCONS_00048286-protein >TCONS_00048286-protein ID=TCONS_00048286-protein|Name=TCONS_00048286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=584bp
YRSASMVSLKCCQLLLLVAMVSAYNYERDGREFADNLDEPARESFHRQNY
EDSPNNSEKRYQADANESPFEDSEPRRVRSEETNSRNDNPFIDGKVWWGG
KDEPETQYKNEMNRDLENIEETNSRNDNPFIDGKVWWGGKDEPETQYKNE
MNRDLENIEETNSRNDNPFIDGKVWWGGRDEPETQYKNEMNRDLENIEET
NSRNDNRESDHRFENTIANNDQENSLKDDQYQSPDFRREPMDNELQSDPA
VRTRIANWWNTFDHGGLSKCAPNTYLTGLWRSARHRPDRLGLLEQGDCKS
TPFPSNGYSRCYKLNIWHSFDRKGWAQCRRGYFIQSITSTRGKGLHNIEE
LHCCKPKASIQGRCHKENVWRSFDHKGWSRCRAGTYMQGIFRNTCDQLFC
LEEFRCCSMKQSIPNPGRIAVSRANWWHSFDRQGWSTCPAGQYITGFYRS
ARRIPDGIWRLEEAKCKSAPLGWVPRRQQQCYKLNIWSSFDRKGWGKCKH
GYYMQGIYRTNGRNLHNIEEFRCCKPKNHHVVQRSCRKQNVWHSFDRKGW
SQCPGNTYMTGIWRNNCNWLYCIEEFECCSMKYV Run BLAST on NCBI transcript from alignment at scaffold_142:366472..368950+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048286 ID=TCONS_00048286|Name=TCONS_00048286|organism=Clytia hemisphaerica|type=transcript|length=2479bp|location=Sequence derived from alignment at scaffold_142:366472..368950+ (Clytia hemisphaerica)
atATAGGAGTGCAAGCATGGTGTCGTTGAAATGTTGCCAGTTGTTGCTTT
TAGTTGCCATGGTATCTGCTTATAACTACGAACGAGATGGAAGAGAGTTT
GCAGACAATCTAGATGAACCTGCTCGAGAAAGTTTCCACCGTGAGTCCGT
CTCCAATTTTTTGAGATACTGAATACCGTAtctatgtttaaaaaaaatct
agtAGTTTTAAACTACATAGTGTTAGTGTAGATATCTTTTTTCGTCTAGT
GTTTTCTTATTGATAGCCCTGTTTCACTCAAAAAGCAAGATCGTTTTTAG
TCTTTTAGAATTTCAAACTTAGTTCCAAAAATTGCAACGAGACTGACAGA
AGCTAGAGAAATCTTGACTGACAGACTTACTTTCATACAATAATACATGT
CTCCGTCAGTCAGATTTACATGTTCTTCATGTTCATTATATTTATATCAT
TTTACATATAGGACAAAATTACGAGGACTCTCCAAACAACTCTGAGAAAA
GATACCAAGCTGATGCTAACGAATCACCTTTTGAAGACAGTGAACCAAGA
CGTGTTCGAAGTGAAGAAACCAATAGCCGAAATGACAACCCATTCATTGA
TGGAAAAGTATGGTGGGGTGGAAAAGACGAACCGGAGACCCAatacaaaa
atgaaatgaaCAGAGATCTGGAAAACATTGAAGAAACCAATAGCCGAAAT
GACAACCCATTCATTGATGGAAAAGTATGGTGGGGTGGAAAAGACGAACC
GGAGACCCAatacaaaaatgaaatgaaCAGAGATCTGGAAAACATTGAAG
AAACCAATAGCCGAAATGACAACCCATTCATTGATGGAAAAGTATGGTGG
GGTGGAAGAGACGAACCGGAGACCCAatacaaaaatgaaatgaaCAGAGA
TCTGGAAAACATTGAAGAAACCAATAGCCGAAATGACAACCGTGAATCTG
ATCATCGATTTGAGAACACCATAGCCAACAATGATCAAGAAAATTCGCTT
AAAGATGATCAGTATCAATCACCAGATTTCCGAAGAGAACCTATGGATAA
TGAATTGCAATCTGATCCTGCTGTCAGAACCCGAATTGCCAACTGGTGGA
ACACATTTGATCATGGTGGTTTATCAAAATGTGCTCCTAACACCTACTTG
ACTGGTCTATGGAGAAGTGCCAGACATCGACCAGATCGACTTGGATTACT
TGAACAAGGAGATTGTAAATCAACACCTTTCCCATCTAATGGTTACTCAC
GTTGTTACAAATTGAATATCTGGCACAGTTTCGATCGAAAAGGTTGGGCA
CAATGTCGTAGGGGTTACTTCATCCAATCTATTACTTCAACCAGAGGAAA
GGGCCTTCACAATATTGAAGAACTCCACTGCTGCAAACCAAAAGCATCTA
TCCAAGGTAGATGCCATAAAGAGAATGTTTGGAGGTCTTTTGACCATAAG
GGCTGGTCCAGATGCAGAGCAGGTACCTACATGCAAGGTATATTTCGAAA
CACCTGTGATCAATTATTCTGCCTTGAGGAATTTAGGTGTTGCTCAATGA
AACAAAGTATTCCAAATCCTGGCAGAATCGCAGTAAGTAGAGCAAACTGG
TGGCATTCTTTTGATCGTCAAGGTTGGTCTACATGTCCTGCAGGTCAGTA
TATCACTGGTTTTTATCGAAGTGCTAGGAGAATACCAGACGGTATTTGGC
GCCTTGAGGAGGCTAAATGTAAAAGTGCACCATTAGGATGGGTCCCGAGA
AGACAACAACAATGCTACAAACTCAACATCTGGAGTTCCTTTGACCGTAA
AGGATGGGGAAAGTGCAAACATGGCTATTACATGCAAGGTATTTACCGCA
CCAATGGAAGAAACTTACATAACATTGAAGAATTCCGCTGCTGCAAACCC
AAAAATCACCATGTCGTCCAAAGGAGTTGCCGAAAACAAAACGTTTGGCA
TTCTTTCGACAGGAAAGGATGGTCCCAGTGCCCTGGTAATACCTACATGA
CTGGAATATGGAGAAACAATTGCAACTGGCTTTATTGTATTGAGGAATTC
GAATGCTGTTCAATGAAATACGTTTAGAGATAACGTCAAAGAAACTAGAA
TGAGGGATAGTATATGAATAACGAGACCTCACTTTTAATAGACCAAGGAG
agttttctttaattttgtatttttttttataggTGGGTGAAATTAAATCT
TCTAAGACCTGTACTACCATTTTCGTTAAAATGCAAGCTAAGTGGGTCAA
GTATGACTTTTCGGATAGCtgtttcttgaaaaaatgaaacactAAGCTTT
AGCTTCGATATTTGTTTAAATTAACTTTACAATAACAACTTTACCCAACT
TGTAATTTCTTGTTAGggataaacttttatttttttttctattttctttt
acaACTTTAATTTATGTAGACTTTTTTATagctttcaattttcttttttg
atttcgGGAAAAAATTCATGTTCAACATA Coding sequence (CDS) from alignment at scaffold_142:366472..368950+ >TCONS_00048286 ID=TCONS_00048286|Name=TCONS_00048286|organism=Clytia hemisphaerica|type=CDS|length=3510bp|location=Sequence derived from alignment at scaffold_142:366472..368950+ (Clytia hemisphaerica)
tATAGGAGTGCAAGCATGGTGTCGTTGAAATGTTGCCAGTTGTTGCTTTT
AGTTGCCATGGTATCTGCTTATAACTACGAACGAGATGGAAGAGAGTTTG
CAGACAATCTAGATGAACCTGCTCGAGAAAGTTTCCACCGACAAAATTAC
GAGGACTCTCCAAACAACTCTGAGAAAAGATACCAAGCTGATGCTAACGA
ATCACCTTTTGAAGACAGTGAACCAAGACGTGTTCGAAGTGAAGAAACCA
ATAGCCGAAATGACAACCCATTCATTGATGGAAAAGTATGGTGGGGTGGA
AAAGACGAACCGGAGACCCAatacaaaaatgaaatgaaCAGAGATCTGGA
AAACATTGAAGAAACCAATAGCCGAAATGACAACCCATTCATTGATGGAA
AAGTATGGTGGGGTGGAAAAGACGAACCGGAGACCCAatacaaaaatgaa
atgaaCAGAGATCTGGAAAACATTGAAGAAACCAATAGCCGAAATGACAA
CCCATTCATTGATGGAAAAGTATGGTGGGGTGGAAGAGACGAACCGGAGA
CCCAatacaaaaatgaaatgaaCAGAGATCTGGAAAACATTGAAGAAACC
AATAGCCGAAATGACAACCGTGAATCTGATCATCGATTTGAGAACACCAT
AGCCAACAATGATCAAGAAAATTCGCTTAAAGATGATCAGTATCAATCAC
CAGATTTCCGAAGAGAACCTATGGATAATGAATTGCAATCTGATCCTGCT
GTCAGAACCCGAATTGCCAACTGGTGGAACACATTTGATCATGGTGGTTT
ATCAAAATGTGCTCCTAACACCTACTTGACTGGTCTATGGAGAAGTGCCA
GACATCGACCAGATCGACTTGGATTACTTGAACAAGGAGATTGTAAATCA
ACACCTTTCCCATCTAATGGTTACTCACGTTGTTACAAATTGAATATCTG
GCACAGTTTCGATCGAAAAGGTTGGGCACAATGTCGTAGGGGTTACTTCA
TCCAATCTATTACTTCAACCAGAGGAAAGGGCCTTCACAATATTGAAGAA
CTCCACTGCTGCAAACCAAAAGCATCTATCCAAGGTAGATGCCATAAAGA
GAATGTTTGGAGGTCTTTTGACCATAAGGGCTGGTCCAGATGCAGAGCAG
GTACCTACATGCAAGGTATATTTCGAAACACCTGTGATCAATTATTCTGC
CTTGAGGAATTTAGGTGTTGCTCAATGAAACAAAGTATTCCAAATCCTGG
CAGAATCGCAGTAAGTAGAGCAAACTGGTGGCATTCTTTTGATCGTCAAG
GTTGGTCTACATGTCCTGCAGGTCAGTATATCACTGGTTTTTATCGAAGT
GCTAGGAGAATACCAGACGGTATTTGGCGCCTTGAGGAGGCTAAATGTAA
AAGTGCACCATTAGGATGGGTCCCGAGAAGACAACAACAATGCTACAAAC
TCAACATCTGGAGTTCCTTTGACCGTAAAGGATGGGGAAAGTGCAAACAT
GGCTATTACATGCAAGGTATTTACCGCACCAATGGAAGAAACTTACATAA
CATTGAAGAATTCCGCTGCTGCAAACCCAAAAATCACCATGTCGTCCAAA
GGAGTTGCCGAAAACAAAACGTTTGGCATTCTTTCGACAGGAAAGGATGG
TCCCAGTGCCCTGGTAATACCTACATGACTGGAATATGGAGAAACAATTG
CAACTGGCTTTATTGTATTGAGGAATTCGAATGCTGTTCAATGAAATACG
TTTAGtATAGGAGTGCAAGCATGGTGTCGTTGAAATGTTGCCAGTTGTTG
CTTTTAGTTGCCATGGTATCTGCTTATAACTACGAACGAGATGGAAGAGA
GTTTGCAGACAATCTAGATGAACCTGCTCGAGAAAGTTTCCACCGACAAA
ATTACGAGGACTCTCCAAACAACTCTGAGAAAAGATACCAAGCTGATGCT
AACGAATCACCTTTTGAAGACAGTGAACCAAGACGTGTTCGAAGTGAAGA
AACCAATAGCCGAAATGACAACCCATTCATTGATGGAAAAGTATGGTGGG
GTGGAAAAGACGAACCGGAGACCCAatacaaaaatgaaatgaaCAGAGAT
CTGGAAAACATTGAAGAAACCAATAGCCGAAATGACAACCCATTCATTGA
TGGAAAAGTATGGTGGGGTGGAAAAGACGAACCGGAGACCCAatacaaaa
atgaaatgaaCAGAGATCTGGAAAACATTGAAGAAACCAATAGCCGAAAT
GACAACCCATTCATTGATGGAAAAGTATGGTGGGGTGGAAGAGACGAACC
GGAGACCCAatacaaaaatgaaatgaaCAGAGATCTGGAAAACATTGAAG
AAACCAATAGCCGAAATGACAACCGTGAATCTGATCATCGATTTGAGAAC
ACCATAGCCAACAATGATCAAGAAAATTCGCTTAAAGATGATCAGTATCA
ATCACCAGATTTCCGAAGAGAACCTATGGATAATGAATTGCAATCTGATC
CTGCTGTCAGAACCCGAATTGCCAACTGGTGGAACACATTTGATCATGGT
GGTTTATCAAAATGTGCTCCTAACACCTACTTGACTGGTCTATGGAGAAG
TGCCAGACATCGACCAGATCGACTTGGATTACTTGAACAAGGAGATTGTA
AATCAACACCTTTCCCATCTAATGGTTACTCACGTTGTTACAAATTGAAT
ATCTGGCACAGTTTCGATCGAAAAGGTTGGGCACAATGTCGTAGGGGTTA
CTTCATCCAATCTATTACTTCAACCAGAGGAAAGGGCCTTCACAATATTG
AAGAACTCCACTGCTGCAAACCAAAAGCATCTATCCAAGGTAGATGCCAT
AAAGAGAATGTTTGGAGGTCTTTTGACCATAAGGGCTGGTCCAGATGCAG
AGCAGGTACCTACATGCAAGGTATATTTCGAAACACCTGTGATCAATTAT
TCTGCCTTGAGGAATTTAGGTGTTGCTCAATGAAACAAAGTATTCCAAAT
CCTGGCAGAATCGCAGTAAGTAGAGCAAACTGGTGGCATTCTTTTGATCG
TCAAGGTTGGTCTACATGTCCTGCAGGTCAGTATATCACTGGTTTTTATC
GAAGTGCTAGGAGAATACCAGACGGTATTTGGCGCCTTGAGGAGGCTAAA
TGTAAAAGTGCACCATTAGGATGGGTCCCGAGAAGACAACAACAATGCTA
CAAACTCAACATCTGGAGTTCCTTTGACCGTAAAGGATGGGGAAAGTGCA
AACATGGCTATTACATGCAAGGTATTTACCGCACCAATGGAAGAAACTTA
CATAACATTGAAGAATTCCGCTGCTGCAAACCCAAAAATCACCATGTCGT
CCAAAGGAGTTGCCGAAAACAAAACGTTTGGCATTCTTTCGACAGGAAAG
GATGGTCCCAGTGCCCTGGTAATACCTACATGACTGGAATATGGAGAAAC
AATTGCAACTGGCTTTATTGTATTGAGGAATTCGAATGCTGTTCAATGAA
ATACGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048286-exon-scaffold_142-1491911889:366472..366611 | TCONS_00048286-exon-scaffold_142-1491911889:366472..366611 | Clytia hemisphaerica | exon |
| TCONS_00048286-exon-scaffold_142-1510915933:366472..366611 | TCONS_00048286-exon-scaffold_142-1510915933:366472..366611 | Clytia hemisphaerica | exon |
| TCONS_00048286-exon-scaffold_142-1575043694:366472..366611 | TCONS_00048286-exon-scaffold_142-1575043694:366472..366611 | Clytia hemisphaerica | exon |
| TCONS_00048286-exon-scaffold_142-1491911889:366933..368950 | TCONS_00048286-exon-scaffold_142-1491911889:366933..368950 | Clytia hemisphaerica | exon |
| TCONS_00048286-exon-scaffold_142-1510915933:366933..368950 | TCONS_00048286-exon-scaffold_142-1510915933:366933..368950 | Clytia hemisphaerica | exon |
| TCONS_00048286-exon-scaffold_142-1575043694:366933..368950 | TCONS_00048286-exon-scaffold_142-1575043694:366933..368950 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:366472..368950 + |
Blast
The following BLAST results are available for this feature:
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