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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048287 ID=TCONS_00048287|Name=TCONS_00048287|organism=Clytia hemisphaerica|type=transcript|length=947bp
taaattattgaatttttatataCATAGCCGAATAAAGAAACATGATAAAA
CTATTTTTGTTGATGGTTTTCATCGTCAATTTGACTGTTGGTATTGCAAA
GCCTTCGTCGGAATCAACATCAAACAGTATTACAAATGGAACAGCGAAGC
AACAAACTATAGTACCTACTCCAAAAGAACTTACTCCATCATCAGcaaca
caacaacaacaagataGTCAAGGTGTCAATTATGCTAGCGCTAGTATAAA
TCTGAGAGCAAGATTAGCCAGTTGTAGGTGTCAACAGCTGGGTAGAGGAC
AAACTCCTTGGCTTTATAGACACAGGTGTAACTCACGTAATCAGTATGAT
TGTTGTCGATTGTGCAATCAAGGAAGTGGAGACAATAGATACTCATGTGT
GGTGATTGGCCTTCGTGAAAGattgttttattactttttctttggacCAA
TTGATTATTACTGTAGACAAGACAGTGGTGCAGATGTTGCTACCAATATG
AATTAAATACCATCCAAGTACACCTCTGTATCACAAACTCGGAAAAACTT
TCACACTGGAGATATTGGCTGTAGAATCGCCTTGAGAAACCGGGAATATT
GGTTGATGAGTCGATGAGTACCCTGCAATTTCAACCCTATTGTAAAAATT
AGCTTAGCTTTCATCCCAACTTGGAAAGTAATtgtaattttaatttaaat
aCCTCCAGATCTTCCTAAAAATATTTGCACTGGGCtagtgagacaggggt
ggtACACAGTGCTGCTTCAATGGTTATCCATGTCGGGAGCTGGTATACAA
TGaagtttttttattatattcaaTGTTTGTATTTATTTGTGTATTGTATT
TATAACagaatttttattcttttttctcacttttttcatCATTTCACCTA
AATGTCTTGACTCTCTGTAAACGTAGAAGCTGCCATTTGCACAATCA Run BLAST on NCBI protein sequence of TCONS_00048287-protein >TCONS_00048287-protein ID=TCONS_00048287-protein|Name=TCONS_00048287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MIKLFLLMVFIVNLTVGIAKPSSESTSNSITNGTAKQQTIVPTPKELTPS
SATQQQQDSQGVNYASASINLRARLASCRCQQLGRGQTPWLYRHRCNSRN
QYDCCRLCNQGSGDNRYSCVVIGLRERLFYYFFFGPIDYYCRQDSGADVA
TNMN Run BLAST on NCBI transcript from alignment at scaffold_142:390640..391860+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048287 ID=TCONS_00048287|Name=TCONS_00048287|organism=Clytia hemisphaerica|type=transcript|length=1221bp|location=Sequence derived from alignment at scaffold_142:390640..391860+ (Clytia hemisphaerica)
taaattattgaatttttatataCATAGCCGAATAAAGAAACATGATAAAA
CTATTTTTGTTGATGGTTTTCATCGTCAATTTGACTGTAAGTCATTTTCC
AtgtttttacatttcaaattttcaaaaataaatcttttgaacCTTATGAC
TATCTACtttaaattatctttccaacgatatgtATATTGTCTTTTATATA
ATTATGGGCGTTGacgaaaagttttaaaattctttaaaagtgtttggatt
ttatttataaattatCGTTTTTAAGCTTTAGTATAACTATCTCTAGGTTG
GTATTGCAAAGCCTTCGTCGGAATCAACATCAAACAGTATTACAAATGGA
ACAGCGAAGCAACAAACTATAGTACCTACTCCAAAAGAACTTACTCCATC
ATCAGcaacacaacaacaacaagataGTCAAGGTGTCAATTATGCTAGCG
CTAGTATAAATCTGAGAGCAAGATTAGCCAGTTGTAGGTGTCAACAGCTG
GGTAGAGGACAAACTCCTTGGCTTTATAGACACAGGTGTAACTCACGTAA
TCAGTATGATTGTTGTCGATTGTGCAATCAAGGAAGTGGAGACAATAGAT
ACTCATGTGTGGTGATTGGCCTTCGTGAAAGattgttttattactttttc
tttggacCAATTGATTATTACTGTAGACAAGACAGTGGTGCAGATGTTGC
TACCAATATGAATTAAATACCATCCAAGTACACCTCTGTATCACAAACTC
GGAAAAACTTTCACATTGGAGATATTGGCTGTAGAATCGCCTTGAGAAAC
CGGGAATATTGGTNGGAAAAACTTTCACACTGGAGATATTGGCTGTAGAA
TCGCCTTGAGAAACCGGGAATATTGGTTGATGAGTCGATGAGTACCCTGC
AATTTCAACCCTATTGTAAAAATTAGCTTAGCTTTCATCCCAACTTGGAA
AGTAATtgtaattttaatttaaataCCTCCAGATCTTCCTAAAAATATTT
GCACTGGGCtagtgagacaggggtggtACACAGTGCTGCTTCAATGGTTA
TCCATGTCGGGAGCTGGTATACAATGaagtttttttattatattcaaTGT
TTGTATTTATTTGTGTATTGTATTTATAACagaatttttattcttttttc
tcacttttttcatCATTTCACCTAAATGTCTTGACTCTCTGTAAACGTAG
AAGCTGCCATTTGCACAATCA Coding sequence (CDS) from alignment at scaffold_142:390640..391860+ >TCONS_00048287 ID=TCONS_00048287|Name=TCONS_00048287|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_142:390640..391860+ (Clytia hemisphaerica)
ATGATAAAACTATTTTTGTTGATGGTTTTCATCGTCAATTTGACTGTTGG
TATTGCAAAGCCTTCGTCGGAATCAACATCAAACAGTATTACAAATGGAA
CAGCGAAGCAACAAACTATAGTACCTACTCCAAAAGAACTTACTCCATCA
TCAGcaacacaacaacaacaagataGTCAAGGTGTCAATTATGCTAGCGC
TAGTATAAATCTGAGAGCAAGATTAGCCAGTTGTAGGTGTCAACAGCTGG
GTAGAGGACAAACTCCTTGGCTTTATAGACACAGGTGTAACTCACGTAAT
CAGTATGATTGTTGTCGATTGTGCAATCAAGGAAGTGGAGACAATAGATA
CTCATGTGTGGTGATTGGCCTTCGTGAAAGattgttttattactttttct
ttggacCAATTGATTATTACTGTAGACAAGACAGTGGTGCAGATGTTGCT
ACCAATATGAATTAAATGATAAAACTATTTTTGTTGATGGTTTTCATCGT
CAATTTGACTGTTGGTATTGCAAAGCCTTCGTCGGAATCAACATCAAACA
GTATTACAAATGGAACAGCGAAGCAACAAACTATAGTACCTACTCCAAAA
GAACTTACTCCATCATCAGcaacacaacaacaacaagataGTCAAGGTGT
CAATTATGCTAGCGCTAGTATAAATCTGAGAGCAAGATTAGCCAGTTGTA
GGTGTCAACAGCTGGGTAGAGGACAAACTCCTTGGCTTTATAGACACAGG
TGTAACTCACGTAATCAGTATGATTGTTGTCGATTGTGCAATCAAGGAAG
TGGAGACAATAGATACTCATGTGTGGTGATTGGCCTTCGTGAAAGattgt
tttattactttttctttggacCAATTGATTATTACTGTAGACAAGACAGT
GGTGCAGATGTTGCTACCAATATGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048287-exon-scaffold_142-1491911889:390640..390725 | TCONS_00048287-exon-scaffold_142-1491911889:390640..390725 | Clytia hemisphaerica | exon |
| TCONS_00048287-exon-scaffold_142-1510915933:390640..390725 | TCONS_00048287-exon-scaffold_142-1510915933:390640..390725 | Clytia hemisphaerica | exon |
| TCONS_00048287-exon-scaffold_142-1575043694:390640..390725 | TCONS_00048287-exon-scaffold_142-1575043694:390640..390725 | Clytia hemisphaerica | exon |
| TCONS_00048287-exon-scaffold_142-1491911889:390936..391403 | TCONS_00048287-exon-scaffold_142-1491911889:390936..391403 | Clytia hemisphaerica | exon |
| TCONS_00048287-exon-scaffold_142-1510915933:390936..391403 | TCONS_00048287-exon-scaffold_142-1510915933:390936..391403 | Clytia hemisphaerica | exon |
| TCONS_00048287-exon-scaffold_142-1575043694:390936..391403 | TCONS_00048287-exon-scaffold_142-1575043694:390936..391403 | Clytia hemisphaerica | exon |
| TCONS_00048287-exon-scaffold_142-1491911889:391468..391860 | TCONS_00048287-exon-scaffold_142-1491911889:391468..391860 | Clytia hemisphaerica | exon |
| TCONS_00048287-exon-scaffold_142-1510915933:391468..391860 | TCONS_00048287-exon-scaffold_142-1510915933:391468..391860 | Clytia hemisphaerica | exon |
| TCONS_00048287-exon-scaffold_142-1575043694:391468..391860 | TCONS_00048287-exon-scaffold_142-1575043694:391468..391860 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:390640..391860 + |
Blast
The following BLAST results are available for this feature:
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