TCONS_00048288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048288
Unique NameTCONS_00048288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048288 ID=TCONS_00048288|Name=TCONS_00048288|organism=Clytia hemisphaerica|type=transcript|length=1275bp
GAGATTTTGGCGATGTTTTTCATTGTCAATCTTGTGATTGGAAGAACTAT
GCCTATGCCTGCATCAAATTCACAGTCTAATGGCAGTGGAACAAATTCTG
CGTCAAGTCAAAGTGAAAGAAATTCTGTGTCGAGTGAAAGTGGAACAAAT
TCTGCGTCAAATGGAGGTGGAACAAACTCTGCGTCGAATGAAAGTGGAAC
TAGTTCTGCATCAAACGGAAGTGGAACAAATTCTGCGACAAACGGTAGTG
GAACAAATACTGCTTCTAATGGAGATGAAACAAATTCTGCGTCGAATGGA
GGCGGAACAAATTCTGCGTCGGACGGAAGTGGAACAAATTCTGCGACAAA
CGGTAGTGGAACAAATACTGCTTCTAATGGAGATGAAACAAATTCTGCGT
CGAATGGAGGCGGAACAAATTCTGCGTCGGACGGAAGTGGAACAAATTCT
GCGTCGAATTCTGCAACGTTAACAGAAGATACCACAGAGGTGGATACTTC
ATCATTGTTGGACAATTGTCAATGTGACACGCTTGGGAAAGGATTAACAC
CCTTTATATATACGCACTATTGTAAACTTCAAGTACCTACTGATTGTTGT
CGATTATGCGACAAAGCAGGCGGAGATTATGAATATTCTTGTGTTGCTGT
TAGCGATAATGATAAGTTCTTCTGGCAATCCTTTTTGGGTCCACTTGATT
ATTATTGCAGACAAGACAGCGGTGCTTTGGTGGTAAATATGAATAGTTAA
GTGCATTCAAATTGTTGCATATGGGTGAAAACAAAGCAGTGTGGTCTAAC
TCACTAAAGTTATTTGTGCGTGTGCagtcccagctgacacacaatgCAAT
GTTGTTTCAAAACGTATATCTAGCATTCACAACATTCacataacgttaga
tggacattgaaacaacgtcgtgtgcgtGTGCAGTGAACAATACTATCAGC
GAATGAAACCATAGTGCTTGTTTTCAACTCTCACAATGATAAAACTTTAT
TGGATGAAAAGTGCATGATATATGATTTTCTGTGGTGACGAATGCTAAGT
ATATGTAACATGTACCATCAAAATGATAATGTAATTTTGGAAGAATACGT
TCGATTCAGACTACTGGCCGTGCATATCGCGCAGAGAAAGTCATATTTGG
GTAACATTTAATAAGATTTAAAGAAATGAATTGAATGAATTGAttacaaa
aacttttcaaacggGCAAAAGAGCAAAGTAGCACTCTTTCAAATATTCAA
GCTTCTTGTCCAACCCAAAGTCTTC
Run BLAST on NCBI

protein sequence of TCONS_00048288-protein

>TCONS_00048288-protein ID=TCONS_00048288-protein|Name=TCONS_00048288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
EILAMFFIVNLVIGRTMPMPASNSQSNGSGTNSASSQSERNSVSSESGTN
SASNGGGTNSASNESGTSSASNGSGTNSATNGSGTNTASNGDETNSASNG
GGTNSASDGSGTNSATNGSGTNTASNGDETNSASNGGGTNSASDGSGTNS
ASNSATLTEDTTEVDTSSLLDNCQCDTLGKGLTPFIYTHYCKLQVPTDCC
RLCDKAGGDYEYSCVAVSDNDKFFWQSFLGPLDYYCRQDSGALVVNMNS
Run BLAST on NCBI

transcript from alignment at scaffold_142:392171..393945+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048288 ID=TCONS_00048288|Name=TCONS_00048288|organism=Clytia hemisphaerica|type=transcript|length=1775bp|location=Sequence derived from alignment at scaffold_142:392171..393945+ (Clytia hemisphaerica)
GAGATTTTGGCGATGTTTTTCATTGTCAATCTTGTGGTAAGAATTTTGTA
GTAATTTTTATTCGAAGTTCATGTTGGTTTGAATTTCATAGGTAGAGTCG
ATAATTTATGTGGGCATCCTAGTGACTTTTAATCCATCATACAATACTTA
CTTAGATTGGTTTCATGGGCGGCTTGGTAATCTATAGATATCGAATAATT
CAAACTTCAAAATTATATGAAATCACCAATGGGTGCacaatcaaacaatc
aaacaatcaaacaaggTTAAATTGTCAGTGTCATTCCACCACGTAACATT
AGAGTTGGATATCTTCCACTGGTTGTTTAACAcgttgagaaaggttgaag
attcctctctagacCTTCCGGCTTTTAAATACAATAGTATGATACTGACA
TTTTATCTGCAAATTTAGATTTAGAAGCACAATCACATCCTTTGGAGATT
TAATATAATGTTGAGATttaaattctttgaaagattgaATCTTAAATTCT
CTTCATAAACTTTTTGTATAAACTTAATACTCATAGATTGGAAGAACTAT
GCCTATGCCTGCATCAAATTCACAGTCTAATGGCAGTGGAACAAATTCTG
CGTCAAGTCAAAGTGAAAGAAATTCTGTGTCGAGTGAAAGTGGAACAAAT
TCTGCGTCAAATGGAGGTGGAACAAACTCTGCGTCGAATGAAAGTGGAAC
TAGTTCTGCATCAAACGGAAGTGGAACAAATTCTGCGACAAACGGTAGTG
GAACAAATACTGCTTCTAATGGAGATGAAACAAATTCTGCGTCGAATGGA
GGCGGAACAAATTCTGCGTCGGACGGAAGTGGAACAAATTCTGCGACAAA
CGGTAGTGGAACAAATACTGCTTCTAATGGAGATGAAACAAATTCTGCGT
CGAATGGAGGCGGAACAAATTCTGCGTCGGACGGAAGTGGAACAAATTCT
GCGTCGAATTCTGCAACGTTAACAGAAGATACCACAGAGGTGGATACTTC
ATCATTGTTGGACAATTGTCAATGTGACACGCTTGGGAAAGGATTAACAC
CCTTTATATATACGCACTATTGTAAACTTCAAGTACCTACTGATTGTTGT
CGATTATGCGACAAAGCAGGCGGAGATTATGAATATTCTTGTGTTGCTGT
TAGCGATAATGATAAGTTCTTCTGGCAATCCTTTTTGGGTCCACTTGATT
ATTATTGCAGACAAGACAGCGGTGCTTTGGTGGTAAATATGAATAGTTAA
GTGCATTCAAATTGTTGCATATGGGTGAAAACAAAGCAGTGTGGTCTAAC
TCACTAAAGTTATTTGTGCGTGTGCagtcccagctgacacacaatgCAAT
GTTGTTTCAAAACGTATATCTAGCATTCACAACATTCacataacgttaga
tggacattgaaacaacgtcgtgtgcgtGTGCAGTGAACAATACTATCAGC
GAATGAAACCATAGTGCTTGTTTTCAACTCTCACAATGATAAAACTTTAT
TGGATGAAAAGTGCATGATATATGATTTTCTGTGGTGACGAATGCTAAGT
ATATGTAACATGTACCATCAAAATGATAATGTAATTTTGGAAGAATACGT
TCGATTCAGACTACTGGCCGTGCATATCGCGCAGAGAAAGTCATATTTGG
GTAACATTTAATAAGATTTAAAGAAATGAATTGAATGAATTGAttacaaa
aacttttcaaacggGCAAAAGAGCAAAGTAGCACTCTTTCAAATATTCAA
GCTTCTTGTCCAACCCAAAGTCTTC

Coding sequence (CDS) from alignment at scaffold_142:392171..393945+

>TCONS_00048288 ID=TCONS_00048288|Name=TCONS_00048288|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at scaffold_142:392171..393945+ (Clytia hemisphaerica)
GAGATTTTGGCGATGTTTTTCATTGTCAATCTTGTGATTGGAAGAACTAT
GCCTATGCCTGCATCAAATTCACAGTCTAATGGCAGTGGAACAAATTCTG
CGTCAAGTCAAAGTGAAAGAAATTCTGTGTCGAGTGAAAGTGGAACAAAT
TCTGCGTCAAATGGAGGTGGAACAAACTCTGCGTCGAATGAAAGTGGAAC
TAGTTCTGCATCAAACGGAAGTGGAACAAATTCTGCGACAAACGGTAGTG
GAACAAATACTGCTTCTAATGGAGATGAAACAAATTCTGCGTCGAATGGA
GGCGGAACAAATTCTGCGTCGGACGGAAGTGGAACAAATTCTGCGACAAA
CGGTAGTGGAACAAATACTGCTTCTAATGGAGATGAAACAAATTCTGCGT
CGAATGGAGGCGGAACAAATTCTGCGTCGGACGGAAGTGGAACAAATTCT
GCGTCGAATTCTGCAACGTTAACAGAAGATACCACAGAGGTGGATACTTC
ATCATTGTTGGACAATTGTCAATGTGACACGCTTGGGAAAGGATTAACAC
CCTTTATATATACGCACTATTGTAAACTTCAAGTACCTACTGATTGTTGT
CGATTATGCGACAAAGCAGGCGGAGATTATGAATATTCTTGTGTTGCTGT
TAGCGATAATGATAAGTTCTTCTGGCAATCCTTTTTGGGTCCACTTGATT
ATTATTGCAGACAAGACAGCGGTGCTTTGGTGGTAAATATGAATAGTTAA
GAGATTTTGGCGATGTTTTTCATTGTCAATCTTGTGATTGGAAGAACTAT
GCCTATGCCTGCATCAAATTCACAGTCTAATGGCAGTGGAACAAATTCTG
CGTCAAGTCAAAGTGAAAGAAATTCTGTGTCGAGTGAAAGTGGAACAAAT
TCTGCGTCAAATGGAGGTGGAACAAACTCTGCGTCGAATGAAAGTGGAAC
TAGTTCTGCATCAAACGGAAGTGGAACAAATTCTGCGACAAACGGTAGTG
GAACAAATACTGCTTCTAATGGAGATGAAACAAATTCTGCGTCGAATGGA
GGCGGAACAAATTCTGCGTCGGACGGAAGTGGAACAAATTCTGCGACAAA
CGGTAGTGGAACAAATACTGCTTCTAATGGAGATGAAACAAATTCTGCGT
CGAATGGAGGCGGAACAAATTCTGCGTCGGACGGAAGTGGAACAAATTCT
GCGTCGAATTCTGCAACGTTAACAGAAGATACCACAGAGGTGGATACTTC
ATCATTGTTGGACAATTGTCAATGTGACACGCTTGGGAAAGGATTAACAC
CCTTTATATATACGCACTATTGTAAACTTCAAGTACCTACTGATTGTTGT
CGATTATGCGACAAAGCAGGCGGAGATTATGAATATTCTTGTGTTGCTGT
TAGCGATAATGATAAGTTCTTCTGGCAATCCTTTTTGGGTCCACTTGATT
ATTATTGCAGACAAGACAGCGGTGCTTTGGTGGTAAATATGAATAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030735XLOC_030735Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048288-proteinTCONS_00048288-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048288-exon-scaffold_142-1491911889:392171..392206TCONS_00048288-exon-scaffold_142-1491911889:392171..392206Clytia hemisphaericaexon
TCONS_00048288-exon-scaffold_142-1510915933:392171..392206TCONS_00048288-exon-scaffold_142-1510915933:392171..392206Clytia hemisphaericaexon
TCONS_00048288-exon-scaffold_142-1575043694:392171..392206TCONS_00048288-exon-scaffold_142-1575043694:392171..392206Clytia hemisphaericaexon
TCONS_00048288-exon-scaffold_142-1491911889:392707..393945TCONS_00048288-exon-scaffold_142-1491911889:392707..393945Clytia hemisphaericaexon
TCONS_00048288-exon-scaffold_142-1510915933:392707..393945TCONS_00048288-exon-scaffold_142-1510915933:392707..393945Clytia hemisphaericaexon
TCONS_00048288-exon-scaffold_142-1575043694:392707..393945TCONS_00048288-exon-scaffold_142-1575043694:392707..393945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:392171..393945 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0352596	0.0973632	0	0.0384046	0	0	0	0.0822471	0	0.27791	0.101155	0.0221651	4.35502	4.04565	3.68514	4.03584	0.524665	0.384118	0.106136	0	0	0	0	0.0346926	0.786116	1.08427	0.319446	0.097406	0.0369395	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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