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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048290 ID=TCONS_00048290|Name=TCONS_00048290|organism=Clytia hemisphaerica|type=transcript|length=956bp
GAACGCGGAACTTAGATTGGATTCAAAATGaaaatgcatgTATTGACAAA
ACAACTCTTTTTGGTCGTCTTAACATCGTTACTCGTGATATCAGAAATGG
CGCCCGTTGCATCAGAAGAAACAAACAATGTTGAAAATCCAACAGAATCA
CCATCATCAACAGTTTCGACTACCGATCCTACCGATCCTACCGACAGCTC
TTCGGGTGGCTCATCTTCGGGAGGATCGGGATCATCAAACCCACCGAATC
CTCCACCATTTGATTCTTCAACCTGTAATTGTGGAGTCATTGCTGAAGGT
GCTCAACAAAGTCCTTACCTTGCAGTATCATGTGAAATTGGTGCTATTAA
TTGTTGTTCTTATTGTCAAGGTCAACCGAAAGATGTAGAAGCAAATTACG
AATGCGTTGCTATACATGCTTTTACGAGATCATTTTTCGGCATTCCACAC
AGTCACGGATGTCGATATACTATTTCAAGTGGGGCAAATGTCGCTAAGTG
ATTTAACATCCACAGATAATATTGCAGGGTGGAATAAAACGCTTTGTCAT
CGTTGCTTGAGAGTATATCATATTTGAGcttcaaatttcatttaaaaaac
aagttgaaAAGGAAGCGAGAAGCTCTACTTTGACGTGTGCCAGCTGGTAA
TAGTGCCAACAGACTGTGAATCTTTGGCATATTTTCAAGACATCAAGCCA
CgagaacaaaaaattattttctaaaagGGAGTTTTTTATCGACGAcgact
aaaattgaaaaattattttgtatcataaaataaaagaagattttataaat
atcataaatataaattaattaaattgttttgttactgttcatgtttttat
ttttagtttttctttttgtaaatgaTTTTGAGAATTGTTATTTATTGTAT
ATTATTGTATTTCGGTATATTAtatgaaattatttaaaagaattgACATA
TAGAAG Run BLAST on NCBI protein sequence of TCONS_00048290-protein >TCONS_00048290-protein ID=TCONS_00048290-protein|Name=TCONS_00048290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MKMHVLTKQLFLVVLTSLLVISEMAPVASEETNNVENPTESPSSTVSTTD
PTDPTDSSSGGSSSGGSGSSNPPNPPPFDSSTCNCGVIAEGAQQSPYLAV
SCEIGAINCCSYCQGQPKDVEANYECVAIHAFTRSFFGIPHSHGCRYTIS
SGANVAK Run BLAST on NCBI transcript from alignment at scaffold_142:412138..414251+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048290 ID=TCONS_00048290|Name=TCONS_00048290|organism=Clytia hemisphaerica|type=transcript|length=2114bp|location=Sequence derived from alignment at scaffold_142:412138..414251+ (Clytia hemisphaerica)
GAACGCGGAACTTAGATTGGATTCAAAATGGTAggtgtatatattttttc
tgaaCTAGATATGTAGCGTGGTTTTGATCCCGCGTGTAGAATGACCACAA
GGAAAAACAGAAACCTTTTAAAGGTTAGATAGAGGGGCTATTTAGGAGTT
ATTAGAAATTAATTGGATTCAAATAGGTCACTTATTATGAGCTATTACTG
ATGCCGTTTGCTAGCCATGTGTTTAGTTTTAGAAATTGGTGTTTTTACAG
TTGCGCGATTATATAACTATCGTGATATGAGTGAAATTGCTGGATCATTA
TTCGTTATTACTTGGGCAATATCAACCCCAAAGCGGAAAGCAAGAGGATC
TGATGATTTTTCAATGGGCGTTATATTGTGTAGATACTGATAGATATACT
AAAACAAATTTGGTTTCCGAATTTTACGATTTGAGTCTCTTGCGAGAGCG
ATAAACTGCTTGTTTCAATCCTCAGTTGTATATCTGAGCGACCTTGCTAT
CGCTTTTAGACTTCCTCTAAAAGGCAAGAACTGAGGAGCTGATAGTCGGA
ATTAACAACATTGAAAAGCATGTTTGTATAATatatcttcctttttcttt
cagaaaatgcatgTATTGACAAAACAACTCTTTTTGGTCGTCTTAACATC
GTTACTCGTGgtaagtcatttttcatttgattattttcagattttcatgt
GTTgacaatttttgtcaaaataaataaatggtAAGGAAAGTGGCCATTAA
AAATCCATCAATAACCTAAGAATCTAATCACCAACGCACTGAAATTGCGT
CGGTAACTATTTAAAGATATTCACgctaatttaaaaatttctataattta
tCATGTGGTATAAATTGGAAAAACGCAAAACAAATAGTTTCCTGTGAAGA
AGCAATCTTCTTATCTCACGCTGTTCTTTGATTGTGAAATTGATCATATC
ATGTGATATTCTTAACTTAAGTTTCGACACGCTGTTTCGTCATCAACTAT
TgatcaattttctaaaaaaaaactacAATTTATTAAAGTCAAAGATCGGG
AAATTTCAATCCTACCCTATTTCCCAGAGCATCAGCATCAAATTTTCAAC
GTTCACTGAGAAGGGACAAGATAATAGCTCAACACCGAGGTATTCTTTGG
CGTCCATTAGTCTTCGCAGGGAAGACGTTCCCCATAACCCAGTCTTATAC
GAGACatagattttaatattttctaaactttcttttaaTCACCAGATATC
AGAAATGGCGCCCGTTGCATCAGAAGAAACAAACAATGTTGAAAATCCAA
CAGAATCACCATCATCAACAGTTTCGACTACCGATCCTACCGATCCTACC
GACAGCTCTTCGGGTGGCTCATCTTCGGGAGGATCGGGATCATCAAACCC
ACCGAATCCTCCACCATTTGATTCTTCAACCTGTAATTGTGGAGTCATTG
CTGAAGGTGCTCAACAAAGTCCTTACCTTGCAGTATCATGTGAAATTGGT
GCTATTAATTGTTGTTCTTATTGTCAAGGTCAACCGAAAGATGTAGAAGC
AAATTACGAATGCGTTGCTATACATGCTTTTACGAGATCATTTTTCGGCA
TTCCACACAGTCACGGATGTCGATATACTATTTCAAGTGGGGCAAATGTC
GCTAAGTGATTTAACATCCACAGATAATATTGCAGGGTGGAATAAAACGC
TTTGTCATCGTTGCTTGAGAGTATATCATATTTGAGcttcaaatttcatt
taaaaaacaagttgaaAAGGAAGCGAGAAGCTCTACTTTGACGTGTGCCA
GCTGGTAATAGTGCCAACAGACTGTGAATCTTTGGCATATTTTCAAGACA
TCAAGCCACgagaacaaaaaattattttctaaaagGGAGTTTTTTATCGA
CGAcgactaaaattgaaaaattattttgtatcataaaataaaagaagatt
ttataaatatcataaatataaattaattaaattgttttgttactgttcat
gtttttatttttagtttttctttttgtaaatgaTTTTGAGAATTGTTATT
TATTGTATATTATTGTATTTCGGTATATTAtatgaaattatttaaaagaa
ttgACATATAGAAG Coding sequence (CDS) from alignment at scaffold_142:412138..414251+ >TCONS_00048290 ID=TCONS_00048290|Name=TCONS_00048290|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_142:412138..414251+ (Clytia hemisphaerica)
ATGaaaatgcatgTATTGACAAAACAACTCTTTTTGGTCGTCTTAACATC
GTTACTCGTGATATCAGAAATGGCGCCCGTTGCATCAGAAGAAACAAACA
ATGTTGAAAATCCAACAGAATCACCATCATCAACAGTTTCGACTACCGAT
CCTACCGATCCTACCGACAGCTCTTCGGGTGGCTCATCTTCGGGAGGATC
GGGATCATCAAACCCACCGAATCCTCCACCATTTGATTCTTCAACCTGTA
ATTGTGGAGTCATTGCTGAAGGTGCTCAACAAAGTCCTTACCTTGCAGTA
TCATGTGAAATTGGTGCTATTAATTGTTGTTCTTATTGTCAAGGTCAACC
GAAAGATGTAGAAGCAAATTACGAATGCGTTGCTATACATGCTTTTACGA
GATCATTTTTCGGCATTCCACACAGTCACGGATGTCGATATACTATTTCA
AGTGGGGCAAATGTCGCTAAGTGAATGaaaatgcatgTATTGACAAAACA
ACTCTTTTTGGTCGTCTTAACATCGTTACTCGTGATATCAGAAATGGCGC
CCGTTGCATCAGAAGAAACAAACAATGTTGAAAATCCAACAGAATCACCA
TCATCAACAGTTTCGACTACCGATCCTACCGATCCTACCGACAGCTCTTC
GGGTGGCTCATCTTCGGGAGGATCGGGATCATCAAACCCACCGAATCCTC
CACCATTTGATTCTTCAACCTGTAATTGTGGAGTCATTGCTGAAGGTGCT
CAACAAAGTCCTTACCTTGCAGTATCATGTGAAATTGGTGCTATTAATTG
TTGTTCTTATTGTCAAGGTCAACCGAAAGATGTAGAAGCAAATTACGAAT
GCGTTGCTATACATGCTTTTACGAGATCATTTTTCGGCATTCCACACAGT
CACGGATGTCGATATACTATTTCAAGTGGGGCAAATGTCGCTAAGTGAAT
GaaaatgcatgTATTGACAAAACAACTCTTTTTGGTCGTCTTAACATCGT
TACTCGTGATATCAGAAATGGCGCCCGTTGCATCAGAAGAAACAAACAAT
GTTGAAAATCCAACAGAATCACCATCATCAACAGTTTCGACTACCGATCC
TACCGATCCTACCGACAGCTCTTCGGGTGGCTCATCTTCGGGAGGATCGG
GATCATCAAACCCACCGAATCCTCCACCATTTGATTCTTCAACCTGTAAT
TGTGGAGTCATTGCTGAAGGTGCTCAACAAAGTCCTTACCTTGCAGTATC
ATGTGAAATTGGTGCTATTAATTGTTGTTCTTATTGTCAAGGTCAACCGA
AAGATGTAGAAGCAAATTACGAATGCGTTGCTATACATGCTTTTACGAGA
TCATTTTTCGGCATTCCACACAGTCACGGATGTCGATATACTATTTCAAG
TGGGGCAAATGTCGCTAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048290-exon-scaffold_142-1491911889:412138..412167 | TCONS_00048290-exon-scaffold_142-1491911889:412138..412167 | Clytia hemisphaerica | exon |
| TCONS_00048290-exon-scaffold_142-1510915933:412138..412167 | TCONS_00048290-exon-scaffold_142-1510915933:412138..412167 | Clytia hemisphaerica | exon |
| TCONS_00048290-exon-scaffold_142-1575043694:412138..412167 | TCONS_00048290-exon-scaffold_142-1575043694:412138..412167 | Clytia hemisphaerica | exon |
| TCONS_00048290-exon-scaffold_142-1491911889:412741..412797 | TCONS_00048290-exon-scaffold_142-1491911889:412741..412797 | Clytia hemisphaerica | exon |
| TCONS_00048290-exon-scaffold_142-1510915933:412741..412797 | TCONS_00048290-exon-scaffold_142-1510915933:412741..412797 | Clytia hemisphaerica | exon |
| TCONS_00048290-exon-scaffold_142-1575043694:412741..412797 | TCONS_00048290-exon-scaffold_142-1575043694:412741..412797 | Clytia hemisphaerica | exon |
| TCONS_00048290-exon-scaffold_142-1491911889:413383..414251 | TCONS_00048290-exon-scaffold_142-1491911889:413383..414251 | Clytia hemisphaerica | exon |
| TCONS_00048290-exon-scaffold_142-1510915933:413383..414251 | TCONS_00048290-exon-scaffold_142-1510915933:413383..414251 | Clytia hemisphaerica | exon |
| TCONS_00048290-exon-scaffold_142-1575043694:413383..414251 | TCONS_00048290-exon-scaffold_142-1575043694:413383..414251 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:412138..414251 + |
Blast
The following BLAST results are available for this feature:
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