TCONS_00048292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048292
Unique NameTCONS_00048292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048292 ID=TCONS_00048292|Name=TCONS_00048292|organism=Clytia hemisphaerica|type=transcript|length=335bp
GGACAAAGTGCTGCGTCACACCCTGGTCGATCCTTGTTCCAAGCAGACAT
TGTATTAACACCAGAATTGCGAAAATATTTACGACAGCAAGATAACAGAA
ATCCAACGGGGAAAGTTGCTGACGTGGTGCAGACAAGAAAATGGCCCAAT
GCTGTCGTTCCTTATGTTTTCAAGTCTGGATTTGCTTATGGTGATGTCAC
TCGTCGAGCGATGGCGGATATTGAAAAACATTCGTGTATTCGTTTCAAGA
AGCGAACAAATGAAGCTGGATATATTCAATTCGTCACCAGTAGAGGATGC
TGGTCATCGATTGGATATTACGGTGTGCAACAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_142:437096..440197+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048292 ID=TCONS_00048292|Name=TCONS_00048292|organism=Clytia hemisphaerica|type=transcript|length=3102bp|location=Sequence derived from alignment at scaffold_142:437096..440197+ (Clytia hemisphaerica)
GGACAAAGTGCTGCGTCACACCCTGGTAAGTAGAAATAGCAAAAAAAGCT
GCTTTCCCAGTTAGTTATACGATCCCATGATCGTACAAGGATAATGTCCT
CTAAAGGTTCTCAAAGGCCTCGAAAATACTTCAAGATCAAACATCAAAGC
CCTACCCTAATTATTCATAAAAGTTCATAGACAATAATTTGGTATTACTG
AAGGTATTACGCATGGTTTCTTCAGTGCagaatttcattgttttgagTAA
ATCTGTTATCCCTATTACTGCAAGTTTGAAGAtctaaaaaatacataaac
aGGCAATTAACATTTTTCTCTTGACCATTTTAGCAATTAAGTTTAGGCCA
TATCGTGAACTATTTGATTACCCCTTTAACATCGAGACAGATTGTTTCTC
CATCTTAATTCTAAATCCTCCATGACCTTAAGCTTGACGAAAAAATTTCT
GCCTCGATATAAGTGATGGGATTATTTTGTCAATCTGTTACTTAGTAGCA
ATAAAAATCGATTGTACTTTGTAAAATCTGCCCTTAAGATAAACAATTTG
TTTGTTAATTAAAAGTCAAGTGCTTAAACGATGGGTCAGCCATTATTCAA
TTAAAGTAAAAGGTAATGATTATACAAAAAGATCATCGTTtttaattacg
tcatttttgataaattgttatacaaattctgaaaatggaTCCTGATAAAT
CAAAACTGTTAGAGTGAATGATTAATTGATTACGAATAATTCTATCATAT
CCACCTGTTTTACTGCGTATTTGGCATTTTGTTTAATCATTCCGTAAGCT
GGGAACTTCAAACGAGTCTTTTTATAGTTTAATTTGTAACAGCTTTCCAG
TCAAATCAGTCCATATGAAATACTGTATATCTGTCAATCGTCCCCCTTGT
GAACTTTTAAGCTTGACCGTGCACTAAGATAGCGGTGCAATTATCACACC
GGTAATGCCTGACTATACCCCAGAGGCACTGACCTTGGCAGCTGACGAGG
AGCCGTTAGAGTTTGAAAACTCAGATATAAGTGTTttgtaaatttgggac
cctgtcagaacgaaaaaagTTCTTCCATTTTCACCCTAAAAGTGGCAAaa
gtcccccccccctcccGGGTGACTGAGTCATAGAGTTCATAGCatggaaa
gaaaaaatgaatctTTTGTCACAAACTGTGAACtgattttcaattcaaaa
ttcaacTTTCCATACAATTTAGGTCGATCCTTGTTCCAAGCAGACATTGT
ATTAACACCAGAATTGCGAAAATATTTACGACAGCAAGATAACAGAAATC
CAACGGGGAAAGTTGCTGACGTGGTGCAGACAAGAAAATGGCCCAATGCT
GTCGTTCCTTATGTTTTCAAGTCTGGATTTGGTAAGTAAACTGATTCAAG
TAGCAATTAAACTAAAAACATGTTCCATAGGGGAATTCTCCAATCAGCCT
AGTTCACTGACATGAATTGACCGTAGCATAAAGGTAGACCATCCAGCTTG
ATGACTGCCAACTGCTAAGTAAAGAAGTTGAAGAAATTTAAGGTAAGGAA
TGACACCGTCCTCCACAAACTGTGTAGTTAAATGGAAAGGAAACCTTTTA
ATAGCCCTCTACTACACCCCatcgctgggaccccagccccactgtgAAAT
TGGGTAAAAAATTCGTCCCCAGggagaaaataccctggaatttcagccca
acttggaaattgactttgattttatctccacttgaaattcaatgtttaaa
aattgcactctaaaaccatccaCACTGGATTTTTGAGCCTTGGAACAAAG
TAATTGCtctccccattgggatttcaataggactTTGTATCCTCGCCGAT
ATGAAGTTCCactgggctgtgagacaggggtgttctacTAAAGGGATGTA
CAGCAGGACTGTTTTATCCAACTTTAGAATCTTTAGAAATATCAACATTA
TACTATGTTTTCTACACAGCTTATGGTGACGTCACTCGTCGAGCGATGGC
GGATATTGAAAAACATTCGTGTATTCGTTTCAAGAAGCGAACAAATGAAG
CTGGATATATTCAATTCGTCACCAGTAGAGGGTATGTAAGAAAGCTTTTG
AATCCTGAATTATTATTTTCAGGTTATATTTTTGGGTTGAAAAGTGTAAA
AACAAAGCTTCTCCTTATTTGAAACCAGCATTTTGGATAGCTTTTATTGG
AAGAGTGTATTTGATAATTCTGGGTGtgacccattgagtttaaagcccga
agggctagagttcaatctctaacctttttcaggcaagaaaaagtgaagcc
tttgtttacgattgatatttttttagaaatttagcggttaattttagttt
caatctgtcatttgtgtaaaaaccaggcgagccgctcaaggcagcgcaac
tttggtagaatttgttggcttcaaatcctaccaaggagattgacttttag
ccctttgggcttatacttcattggtgtGACCTACTATTCATGATAATTGC
AATGTGTTCATAACNAGAATCTTTAGAAATATCAACATTATACTATGTTT
TCTACACAGCTTATGGTGATGTCACTCGTCGAGCGATGGCGGATATTGAA
AAACATTCGTGTATTCGTTTCAAGAAGCGAACAAATGAAGCTGGATATAT
TCAATTCGTCACCAGTAGAGGGTATGTAAGAAAGCTTTTGAATCCTGAAT
TATTATTTTCAGGTTATATTTTTGGGTTGAAAAGTGTAAAAACAAAGCTT
CTCCTTATTTGAAACCAGCATTTTGGATAGCTTTTATTGGAAGAGTGTAT
TTGATAACTCTGGGTGtgacccattgagtttaaagcccgaagggctagag
ttcaatctcttaTACACCTGACATAGATTAAGGGGACCCCCGGGAGAGTG
TTTGGTTAAGTCCTGTACGGGTGCCAAAAACCCCCGTAGCGCtgtttctt
caacttttcaggacttcggaccccttttttcggaatcttcACCCNAATat
cgaattttttgaaaattaacagcctttaattaaaattgatttattgTATT
TATATTATCATAGATGCTGGTCATCGATTGGATATTACGGTGTGCAACAA
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030737XLOC_030737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048292-exon-scaffold_142-1491911889:437096..437120TCONS_00048292-exon-scaffold_142-1491911889:437096..437120Clytia hemisphaericaexon
TCONS_00048292-exon-scaffold_142-1510915933:437096..437120TCONS_00048292-exon-scaffold_142-1510915933:437096..437120Clytia hemisphaericaexon
TCONS_00048292-exon-scaffold_142-1575043694:437096..437120TCONS_00048292-exon-scaffold_142-1575043694:437096..437120Clytia hemisphaericaexon
TCONS_00048292-exon-scaffold_142-1491911889:438318..438476TCONS_00048292-exon-scaffold_142-1491911889:438318..438476Clytia hemisphaericaexon
TCONS_00048292-exon-scaffold_142-1510915933:438318..438476TCONS_00048292-exon-scaffold_142-1510915933:438318..438476Clytia hemisphaericaexon
TCONS_00048292-exon-scaffold_142-1575043694:438318..438476TCONS_00048292-exon-scaffold_142-1575043694:438318..438476Clytia hemisphaericaexon
TCONS_00048292-exon-scaffold_142-1491911889:439655..439766TCONS_00048292-exon-scaffold_142-1491911889:439655..439766Clytia hemisphaericaexon
TCONS_00048292-exon-scaffold_142-1510915933:439655..439766TCONS_00048292-exon-scaffold_142-1510915933:439655..439766Clytia hemisphaericaexon
TCONS_00048292-exon-scaffold_142-1575043694:439655..439766TCONS_00048292-exon-scaffold_142-1575043694:439655..439766Clytia hemisphaericaexon
TCONS_00048292-exon-scaffold_142-1491911889:440159..440197TCONS_00048292-exon-scaffold_142-1491911889:440159..440197Clytia hemisphaericaexon
TCONS_00048292-exon-scaffold_142-1510915933:440159..440197TCONS_00048292-exon-scaffold_142-1510915933:440159..440197Clytia hemisphaericaexon
TCONS_00048292-exon-scaffold_142-1575043694:440159..440197TCONS_00048292-exon-scaffold_142-1575043694:440159..440197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:437096..440197 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.146948	0.142632	0	0	0	0	0	0	0	0	0.156603	0	0	0	0	0	0	0.949474	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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