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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048299 ID=TCONS_00048299|Name=TCONS_00048299|organism=Clytia hemisphaerica|type=transcript|length=2180bp
TACTTCCCGTATTGTACTCGAAGTTATGCGATATTAGTACTTATATTTAT
TTTCATAGGATTATCATCACGGGAAATTTACGTTTCACAGAACGAAGCAA
GTGAAGATATCAAAACGTGCGGCATACAAACACATCCCTGTCAAACTATT
TCTTACGCTATCTCAATATCCAAACACAACGATACCATCCTTTTAGATGC
TGAATACACctatattcaaaatgaaactcTTATTATAGACACGTCTTTGA
AATTCACTTCATACTATAACAGACATGGTAGTAAAGCAAAGATATTGTTT
GAAGAGGGAAAATTTCCTATTGACTATTTGATTCAAAGTTCAGCCAATAT
TTCATTCTACAAGCTTCAAATCTTCTCACAACTTGTCTATCAAGATAATA
TATTCAAAATGGGTAAAAAAGGATGCTCCTTGATTATAGAACATTGCGTC
TTAAACTTTTCACAGCCACTAGAATCAGACTTCATAGATTACACTAAAGA
TTTCAAGAGTGCTCTTATAGTAAAAACAACATTACACAGTCAAAAGAACA
AAATTCagaatacaataaaaaaagcgAAAGGTGTTATAAAAGAAACTAGT
ATTGACTACCATGcaagcataacttttgatgattGTCATTTTGTTAATCA
GATAATGGCCATCACCTTCCAAAGAATAACAGTTAATAGATCAATACTCA
TTGATTCCTTACTTTCATCTAATCCAATAAAAGATCTTCAATTACACCAG
AGTCAGTTTTTTCGATCATCGGTAGAGACTACAATTGAATATGGCAGACT
CAGTGTAACCAATTGTACATTTCAAGGTTCGTCAGAGTATGGGGATCAAG
AAGGAGATTATGCATTCATGCTACAAGTTCACCCTGGTGATACTAATTAT
TGGGAAGGAACAATCCGAGATTGCACTTTCAAGAGAGCATCTTACGGTGC
AGTCAAATTAGAACGTGGGAGTGTAGAATTGATCAATCTGACATTCGCAG
ATAACTACATAAGTGATCAACCAATGATACCAACTGACAGAGCTGCAGCC
TTGACAACACGCTCAACTGACATGGATTTAGTCAATTGTACCTTCAACAA
TAATTCAGCCCGTTCTAATCAAGCTGGATCTATTTTTACCAAGCTAGGGA
CCGGTGAAAGACCATATACTTCAGTTTCAATCGTTAACACCGTTGTTAAT
TCTATTAGGAGCCCCTTGTTTAATGATATCAGGAGCATTTGGATTGAGCC
AAGTATTTATAGCTATCCAACAGGATGGCTTGAAATCACAAAGACCTCAA
AATTGAATTGCTTTGAAGGAAGTTACATCTACGAAGAGTTTGAGAGCTAC
CAATATTTGAGACTACACTGCATCACCTGTAATAGTTCATCTTATAACGC
AAACGGTCATGCTTTTATAACAGGCAATGAAAGAGCTGATAACATAACAG
TCCATAACATTAACTGCCATTTATGCCCCTACCAAGCCTCTTGCAAAGAC
GGCATTATTCGAAGTAAAGGCAATTTCTGGGGATTAGCTGACAGCTCTGG
CAAAGTGACATTCTATTCATGTCCTCCTTTATATTGTTGCTCGTCTTTTG
AAACATGCAAGTCATACAACACTTGTGCTGGGAATCGGGAAGGGAGACTT
TGCGGCGATTGCCAAAAAGGACATGTTTTATCTTTATTCAGTCACAACGA
ATGTATGGATAAATCGTGTTGTGAGTATTCGTGGACCGTGTGGTTGGGAT
ATATATTGATGGCTGCtttgatttgtttgtttttcttgttcAACAAAGAC
GTTTGGAACTacataagaaataaaaataaaaatgttgagaCCGAGGAATC
ACTTCTGGACAACGACGATAATAACAAACTATTGATTACGAGTTCTCCGT
TTAGAAAAAACCTCTCACCATCCTACCAACTACCTGGCATAATTAAAATC
ACATTCTTTTTTTACCAAACCGCTTCCATCATTCGAGTTGTTGCTTCAGC
AAAGACTTATTACCACATGCCAAACTTTGTCAGctttttgtttacattct
tCAATATCAAATTGGATTTCACTTCCAGTTTCATCAAAATTTGTCCTCTG
TGTACAAATAGTATGGTTGTTATGGATGCATTGAAATCTAGTTTATCGTT
AGCATGTTTGGCAATTCTTTTACTGGCAAT Run BLAST on NCBI transcript from alignment at scaffold_142:551992..554171+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048299 ID=TCONS_00048299|Name=TCONS_00048299|organism=Clytia hemisphaerica|type=transcript|length=2180bp|location=Sequence derived from alignment at scaffold_142:551992..554171+ (Clytia hemisphaerica)
TACTTCCCGTATTGTACTCGAAGTTATGCGATATTAGTACTTATATTTAT
TTTCATAGGATTATCATCACGGGAAATTTACGTTTCACAGAACGAAGCAA
GTGAAGATATCAAAACGTGCGGCATACAAACACATCCCTGTCAAACTATT
TCTTACGCTATCTCAATATCCAAACACAACGATACCATCCTTTTAGATGC
TGAATACACctatattcaaaatgaaactcTTATTATAGACACGTCTTTGA
AATTCACTTCATACTATAACAGACATGGTAGTAAAGCAAAGATATTGTTT
GAAGAGGGAAAATTTCCTATTGACTATTTGATTCAAAGTTCAGCCAATAT
TTCATTCTACAAGCTTCAAATCTTCTCACAACTTGTCTATCAAGATAATA
TATTCAAAATGGGTAAAAAAGGATGCTCCTTGATTATAGAACATTGCGTC
TTAAACTTTTCACAGCCACTAGAATCAGACTTCATAGATTACACTAAAGA
TTTCAAGAGTGCTCTTATAGTAAAAACAACATTACACAGTCAAAAGAACA
AAATTCagaatacaataaaaaaagcgAAAGGTGTTATAAAAGAAACTAGT
ATTGACTACCATGcaagcataacttttgatgattGTCATTTTGTTAATCA
GATAATGGCCATCACCTTCCAAAGAATAACAGTTAATAGATCAATACTCA
TTGATTCCTTACTTTCATCTAATCCAATAAAAGATCTTCAATTACACCAG
AGTCAGTTTTTTCGATCATCGGTAGAGACTACAATTGAATATGGCAGACT
CAGTGTAACCAATTGTACATTTCAAGGTTCGTCAGAGTATGGGGATCAAG
AAGGAGATTATGCATTCATGCTACAAGTTCACCCTGGTGATACTAATTAT
TGGGAAGGAACAATCCGAGATTGCACTTTCAAGAGAGCATCTTACGGTGC
AGTCAAATTAGAACGTGGGAGTGTAGAATTGATCAATCTGACATTCGCAG
ATAACTACATAAGTGATCAACCAATGATACCAACTGACAGAGCTGCAGCC
TTGACAACACGCTCAACTGACATGGATTTAGTCAATTGTACCTTCAACAA
TAATTCAGCCCGTTCTAATCAAGCTGGATCTATTTTTACCAAGCTAGGGA
CCGGTGAAAGACCATATACTTCAGTTTCAATCGTTAACACCGTTGTTAAT
TCTATTAGGAGCCCCTTGTTTAATGATATCAGGAGCATTTGGATTGAGCC
AAGTATTTATAGCTATCCAACAGGATGGCTTGAAATCACAAAGACCTCAA
AATTGAATTGCTTTGAAGGAAGTTACATCTACGAAGAGTTTGAGAGCTAC
CAATATTTGAGACTACACTGCATCACCTGTAATAGTTCATCTTATAACGC
AAACGGTCATGCTTTTATAACAGGCAATGAAAGAGCTGATAACATAACAG
TCCATAACATTAACTGCCATTTATGCCCCTACCAAGCCTCTTGCAAAGAC
GGCATTATTCGAAGTAAAGGCAATTTCTGGGGATTAGCTGACAGCTCTGG
CAAAGTGACATTCTATTCATGTCCTCCTTTATATTGTTGCTCGTCTTTTG
AAACATGCAAGTCATACAACACTTGTGCTGGGAATCGGGAAGGGAGACTT
TGCGGCGATTGCCAAAAAGGACATGTTTTATCTTTATTCAGTCACAACGA
ATGTATGGATAAATCGTGTTGTGAGTATTCGTGGACCGTGTGGTTGGGAT
ATATATTGATGGCTGCtttgatttgtttgtttttcttgttcAACAAAGAC
GTTTGGAACTacataagaaataaaaataaaaatgttgagaCCGAGGAATC
ACTTCTGGACAACGACGATAATAACAAACTATTGATTACGAGTTCTCCGT
TTAGAAAAAACCTCTCACCATCCTACCAACTACCTGGCATAATTAAAATC
ACATTCTTTTTTTACCAAACCGCTTCCATCATTCGAGTTGTTGCTTCAGC
AAAGACTTATTACCACATGCCAAACTTTGTCAGctttttgtttacattct
tCAATATCAAATTGGATTTCACTTCCAGTTTCATCAAAATTTGTCCTCTG
TGTACAAATAGTATGGTTGTTATGGATGCATTGAAATCTAGTTTATCGTT
AGCATGTTTGGCAATTCTTTTACTGGCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048299-exon-scaffold_142-1491911889:551992..554171 | TCONS_00048299-exon-scaffold_142-1491911889:551992..554171 | Clytia hemisphaerica | exon |
| TCONS_00048299-exon-scaffold_142-1510915933:551992..554171 | TCONS_00048299-exon-scaffold_142-1510915933:551992..554171 | Clytia hemisphaerica | exon |
| TCONS_00048299-exon-scaffold_142-1575043694:551992..554171 | TCONS_00048299-exon-scaffold_142-1575043694:551992..554171 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:551992..554171 + |
Blast
The following BLAST results are available for this feature:
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